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Report for Sequence Feature Glyma.05g221600

Feature Type:gene_model
Chromosome:Gm05
Start:40107183
stop:40110738
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g221600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G10670.1AT non-intrinsic ABC protein 7 JGI N/AIEA
GO:0006810GO-bp transport EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0016887GO-mf ATPase activity EnsemblGenomesN/AIEA
GO:0016887GO-mf ATPase activity JGI N/AIEA
PTHR24220Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24220:SF6Panther JGI N/AIEA
PF00005PFAM ABC transporter JGI N/AIEA

Expression Patterns of Glyma.05g221600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g221600
ParalogEvidenceComments
Glyma.08g028100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g221600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g36400 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.05g221600
>Glyma.05g221600.2 sequence-type=transcript locus=Glyma.05g221600 ID=Glyma.05g221600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGAACGAAAACAAAAACATTGAAAACAATCATAGCAAAAGAAAAGGGATTTTCTACGTATCAGTGCAGCGATGGCGTTATCCCTTCCCACCCACCCTTCTCCCACCGTTAATCCTCTCCGACGATCCCCAAAACCCACCCTCCGCCGCGTCAACCACCGCGTTTGCGTGGCCAGCGCCGCCACTCCCCTCCTCCAAGTCAATGACTTGAGGGCCAAGATTGTCGAATCCAACGTTGACATTCTCCACGGCGTTAACCTCACCATCAACCAAGGAGAGGTCCACGCCATCATGGGGAAAAACGGTTCCGGCAAAAGCACTTTCGCCAAGGTTCTTGTGGGGCACCCAGATTATGAAGTAACCGGAGGCAGTGTTGTTTTCAAGGGGGAGAATTTGCTTGAGATGGAACCTGAAGAAAGGTCTCTTGCGGGTCTCTTCATGAGTTTTCAATCCCCTGTTGAAATCCCCGGTGTTTCCATTGATCTGTTTCTCGCCATGGCCTACAATGCTCGAATGAAAAAACTTGGTCGAGATGAGGTTGGACCAATCGAGTTTTTACCTTACCTGATGGAGAAGCTTCAGCTTGTTAACATGAAGCCTGACTTTCTCAATAGGAATGTGAACCAAGGGTTTAGTGGCGGTGAACGCAAGCGCAATGAAATCTTGCAGCTTGCGGTTTTGGGGGCGGACTTGGCTATTTTGGATGAAATTGATTCTGGTTTGGATGTTGATGCGCTCAGGGATGTTGCGAATGCAGTTAATAGGATTCTCACCCCAGAAAAGTCCTTGTTGATGATAACTCATTATAGACGGATTCTGGATCTTTTGAATCCTACACATGTCCATGTTATGGACAAAGGGAAAATTGCAAGGACAGGCGACATATCAGTGGTAGAAGCTATTGAGTCAGATGGATATGAAGCAGTCTCTGCTTTAACATAATACAGCTAGTATCGGCATGGATGCAGTGTCACAGTGAGGCAGTTGCACTGATATGCTGATGGCTCTTTTCATCTTTTCCCTTTCTTTGTTCCATTTTGAAAACGAGGAAGCAGACTGTCTAAAGCTCATGCTGGCAGATGTTGATGTTTCTTGACTTGGGACGTATATTCTTCTGGGTATTATTTCAGTAGGCTTTGATAGAGAAATATAGAAACTATTGAATTTCGCTATTCTTTTTTGTTTTTAATGTAAGGGCTTTTTCCTTGTTAATTATCAACTTGGGGGCACACGTGCCACGTTTGCTGTAAATGCAGTAAGGATTGAAATAGCTGTCAATCTACATTAATATTAGCCACATTTTTGTTTTGGTATTGGCTGTTGACCTTATCATGGTTCGTGGGCATATTAAAGTACTTAAAATTATTGCTTTGAGAATATTCATCCATAC

>Glyma.05g221600.3 sequence-type=transcript locus=Glyma.05g221600 ID=Glyma.05g221600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGAACGAAAACAAAAACATTGAAAACAATCATAGCAAAAGAAAAGGGATTTTCTACGTATCAGTGCAGCGATGGCGTTATCCCTTCCCACCCACCCTTCTCCCACCGTTAATCCTCTCCGACGATCCCCAAAACCCACCCTCCGCCGCGTCAACCACCGCGTTTGCGTGGCCAGCGCCGCCACTCCCCTCCTCCAAGTCAATGACTTGAGGGCCAAGATTGTCGAATCCAACGTTGACATTCTCCACGGCGTTAACCTCACCATCAACCAAGGAGAGGTCCACGCCATCATGGGGAAAAACGGTTCCGGCAAAAGCACTTTCGCCAAGGTTCTTGTGGGGCACCCAGATTATGAAGTAACCGGAGGCAGTGTTGTTTTCAAGGGGGAGAATTTGCTTGAGATGGAACCTGAAGAAAGGTCTCTTGCGGGTCTCTTCATGAGTTTTCAATCCCCTGTTGAAATCCCCGGTGTTTCCATTGATCTGTTTCTCGCCATGGCCTACAATGCTCGAATGAAAAAACTTGGTCGAGATGAGGTTGGACCAATCGAGTTTTTACCTTACCTGATGGAGAAGCTTCAGCTTGTTAACATGAAGCCTGACTTTCTCAATAGGAATGTGAACCAAGGGTTTAGTGGCGGTGAACGCAAGCGCAATGAAATCTTGCAGCTTGCGGTTTTGGGGGCGGACTTGGCTATTTTGGATGAAATTGATTCTGGTTTGGATGTTGATGCGCTCAGGGATGTTGCGAATGCAGTTAATAGGATTCTCACCCCAGAAAAGTCCTTGTTGATGATAACTCATTATAGACGGATTCTGGATCTTTTGAATCCTACACATGTCCATGTTATGGACAAAGGGAAAATTGCAAGGACAGGCGACATATCAGTGGTAGAAGCTATTGAGTCAGATGGATATGAAGCAGTCTCTGCTTTAACATAATACAGCTAGTATCGATATATGGCTTTCTCGGTAGTAAAATCCTGGAAGATAAGAAACTCTTTAAACTTTGAATCTCAATGCATCAACATTAGTCTCAATATCATCAGTACGAATAAGGAGCAGAAAAACATTTTCAACGTAGAGTGAGTTGAGGTGCACTACCTGCTGGCATGGATGCAGTGTCACAGTGAGGCAGTTGCACTGATATGCTGATGGCTCTTTTCATCTTTTCCCTTTCTTTGTTCCATTTTGAAAACGAGGAAGCAGACTGTCTAAAGCTCATGCTGGCAGATGTTGATGTTTCTTGACTTGGGACGTATATTCTTCTGGGTATTATTTCAGTAGGCTTTGATAGAGAAATATAGAAACTATTGAATTTCGCTATTCTTTTTTGTTTTTAATGTAAGGGCTTTTTCCTTGTTAATTATCAACTTGGGGGCACACGTGCCACGTTTGCTGTAAATGCAGTAAGGATTGAAATAGCTGTCAATCTACATTAATATTAGCCACATTTTTGTTTTGGTATTGGCTGTTGACCTTATCATGGTTCGTGGGCATATTAAAGTACTTAAAATTATTGCTTTGAG
Coding sequences of Glyma.05g221600
>Glyma.05g221600.1 sequence-type=CDS polypeptide=Glyma.05g221600.1.p locus=Glyma.05g221600 ID=Glyma.05g221600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTTATCCCTTCCCACCCACCCTTCTCCCACCGTTAATCCTCTCCGACGATCCCCAAAACCCACCCTCCGCCGCGTCAACCACCGCGTTTGCGTGGCCAGCGCCGCCACTCCCCTCCTCCAAGTCAATGACTTGAGGGCCAAGATTGTCGAATCCAACGTTGACATTCTCCACGGCGTTAACCTCACCATCAACCAAGGAGAGGTCCACGCCATCATGGGGAAAAACGGTTCCGGCAAAAGCACTTTCGCCAAGGTTCTTGTGGGGCACCCAGATTATGAAGTAACCGGAGGCAGTGTTGTTTTCAAGGGGGAGAATTTGCTTGAGATGGAACCTGAAGAAAGGTCTCTTGCGGGTCTCTTCATGAGTTTTCAATCCCCTGTTGAAATCCCCGGTGTTTCCATTGATCTGTTTCTCGCCATGGCCTACAATGCTCGAATGAAAAAACTTGGTCGAGATGAGGTTGGACCAATCGAGTTTTTACCTTACCTGATGGAGAAGCTTCAGCTTGTTAACATGAAGCCTGACTTTCTCAATAGGAATGTGAACCAAGGGTTTAGTGGCGGTGAACGCAAGCGCAATGAAATCTTGCAGCTTGCGGTTTTGGGGGCGGACTTGGCTATTTTGGATGAAATTGATTCTGGTTTGGATGTTGATGCGCTCAGGGATGTTGCGAATGCAGTTAATAGGATTCTCACCCCAGAAAAGTCCTTGTTGATGATAACTCATTATAGACGGATTCTGGATCTTTTGAATCCTACACATGTCCATGTTATGGACAAAGGGAAAATTGCAAGGACAGGCGACATATCAGTGGTAGAAGCTATTGAGTCAGATGGATATGAAGCAGTCTCTGCTTTAACATAA

>Glyma.05g221600.2 sequence-type=CDS polypeptide=Glyma.05g221600.2.p locus=Glyma.05g221600 ID=Glyma.05g221600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTTATCCCTTCCCACCCACCCTTCTCCCACCGTTAATCCTCTCCGACGATCCCCAAAACCCACCCTCCGCCGCGTCAACCACCGCGTTTGCGTGGCCAGCGCCGCCACTCCCCTCCTCCAAGTCAATGACTTGAGGGCCAAGATTGTCGAATCCAACGTTGACATTCTCCACGGCGTTAACCTCACCATCAACCAAGGAGAGGTCCACGCCATCATGGGGAAAAACGGTTCCGGCAAAAGCACTTTCGCCAAGGTTCTTGTGGGGCACCCAGATTATGAAGTAACCGGAGGCAGTGTTGTTTTCAAGGGGGAGAATTTGCTTGAGATGGAACCTGAAGAAAGGTCTCTTGCGGGTCTCTTCATGAGTTTTCAATCCCCTGTTGAAATCCCCGGTGTTTCCATTGATCTGTTTCTCGCCATGGCCTACAATGCTCGAATGAAAAAACTTGGTCGAGATGAGGTTGGACCAATCGAGTTTTTACCTTACCTGATGGAGAAGCTTCAGCTTGTTAACATGAAGCCTGACTTTCTCAATAGGAATGTGAACCAAGGGTTTAGTGGCGGTGAACGCAAGCGCAATGAAATCTTGCAGCTTGCGGTTTTGGGGGCGGACTTGGCTATTTTGGATGAAATTGATTCTGGTTTGGATGTTGATGCGCTCAGGGATGTTGCGAATGCAGTTAATAGGATTCTCACCCCAGAAAAGTCCTTGTTGATGATAACTCATTATAGACGGATTCTGGATCTTTTGAATCCTACACATGTCCATGTTATGGACAAAGGGAAAATTGCAAGGACAGGCGACATATCAGTGGTAGAAGCTATTGAGTCAGATGGATATGAAGCAGTCTCTGCTTTAACATAA

>Glyma.05g221600.3 sequence-type=CDS polypeptide=Glyma.05g221600.3.p locus=Glyma.05g221600 ID=Glyma.05g221600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTTATCCCTTCCCACCCACCCTTCTCCCACCGTTAATCCTCTCCGACGATCCCCAAAACCCACCCTCCGCCGCGTCAACCACCGCGTTTGCGTGGCCAGCGCCGCCACTCCCCTCCTCCAAGTCAATGACTTGAGGGCCAAGATTGTCGAATCCAACGTTGACATTCTCCACGGCGTTAACCTCACCATCAACCAAGGAGAGGTCCACGCCATCATGGGGAAAAACGGTTCCGGCAAAAGCACTTTCGCCAAGGTTCTTGTGGGGCACCCAGATTATGAAGTAACCGGAGGCAGTGTTGTTTTCAAGGGGGAGAATTTGCTTGAGATGGAACCTGAAGAAAGGTCTCTTGCGGGTCTCTTCATGAGTTTTCAATCCCCTGTTGAAATCCCCGGTGTTTCCATTGATCTGTTTCTCGCCATGGCCTACAATGCTCGAATGAAAAAACTTGGTCGAGATGAGGTTGGACCAATCGAGTTTTTACCTTACCTGATGGAGAAGCTTCAGCTTGTTAACATGAAGCCTGACTTTCTCAATAGGAATGTGAACCAAGGGTTTAGTGGCGGTGAACGCAAGCGCAATGAAATCTTGCAGCTTGCGGTTTTGGGGGCGGACTTGGCTATTTTGGATGAAATTGATTCTGGTTTGGATGTTGATGCGCTCAGGGATGTTGCGAATGCAGTTAATAGGATTCTCACCCCAGAAAAGTCCTTGTTGATGATAACTCATTATAGACGGATTCTGGATCTTTTGAATCCTACACATGTCCATGTTATGGACAAAGGGAAAATTGCAAGGACAGGCGACATATCAGTGGTAGAAGCTATTGAGTCAGATGGATATGAAGCAGTCTCTGCTTTAACATAA
Predicted protein sequences of Glyma.05g221600
>Glyma.05g221600.1.p sequence-type=predicted peptide transcript=Glyma.05g221600.1 locus=Glyma.05g221600 ID=Glyma.05g221600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALSLPTHPSPTVNPLRRSPKPTLRRVNHRVCVASAATPLLQVNDLRAKIVESNVDILHGVNLTINQGEVHAIMGKNGSGKSTFAKVLVGHPDYEVTGGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVSIDLFLAMAYNARMKKLGRDEVGPIEFLPYLMEKLQLVNMKPDFLNRNVNQGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVANAVNRILTPEKSLLMITHYRRILDLLNPTHVHVMDKGKIARTGDISVVEAIESDGYEAVSALT*

>Glyma.05g221600.2.p sequence-type=predicted peptide transcript=Glyma.05g221600.2 locus=Glyma.05g221600 ID=Glyma.05g221600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALSLPTHPSPTVNPLRRSPKPTLRRVNHRVCVASAATPLLQVNDLRAKIVESNVDILHGVNLTINQGEVHAIMGKNGSGKSTFAKVLVGHPDYEVTGGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVSIDLFLAMAYNARMKKLGRDEVGPIEFLPYLMEKLQLVNMKPDFLNRNVNQGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVANAVNRILTPEKSLLMITHYRRILDLLNPTHVHVMDKGKIARTGDISVVEAIESDGYEAVSALT*

>Glyma.05g221600.3.p sequence-type=predicted peptide transcript=Glyma.05g221600.3 locus=Glyma.05g221600 ID=Glyma.05g221600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALSLPTHPSPTVNPLRRSPKPTLRRVNHRVCVASAATPLLQVNDLRAKIVESNVDILHGVNLTINQGEVHAIMGKNGSGKSTFAKVLVGHPDYEVTGGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVSIDLFLAMAYNARMKKLGRDEVGPIEFLPYLMEKLQLVNMKPDFLNRNVNQGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVANAVNRILTPEKSLLMITHYRRILDLLNPTHVHVMDKGKIARTGDISVVEAIESDGYEAVSALT*






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