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Report for Sequence Feature Glyma.05g211700

Feature Type:gene_model
Chromosome:Gm05
Start:39315581
stop:39318444
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g211700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G61510.1AT ACC synthase 1 JGI N/AIEA
GO:0009058GO-bp biosynthetic process EnsemblGenomesN/AIEA
GO:0009058GO-bp biosynthetic process JGI N/AIEA
GO:0009693GO-bp ethylene biosynthetic process EnsemblGenomesN/AIEA
GO:0009835GO-bp fruit ripening EnsemblGenomesN/AIEA
GO:0042218GO-bp 1-aminocyclopropane-1-carboxylate biosynthetic process EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0016829GO-mf lyase activity EnsemblGenomesN/AIEA
GO:0016847GO-mf 1-aminocyclopropane-1-carboxylate synthase activity EnsemblGenomesN/AIEA
GO:0030170GO-mf pyridoxal phosphate binding EnsemblGenomesN/AIEA
GO:0030170GO-mf pyridoxal phosphate binding JGI N/AIEA
KOG0256 KOG 1-aminocyclopropane-1-carboxylate synthase, and related proteins JGI N/AIEA
PTHR11751Panther SUBGROUP I AMINOTRANSFERASE RELATED JGI N/AIEA
PTHR11751:SF26Panther 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE JGI N/AIEA
PF00155PFAM Aminotransferase class I and II JGI N/AIEA
ETHYL-PWYSoyCyc9 ethylene biosynthesis I (plants) Plant Metabolic Network ISS
PWY-7270SoyCyc9 L-methionine salvage cycle II (plants) Plant Metabolic Network ISS
GN7V-45744SoyCyc9-rxn 1-aminocyclopropane-1-carboxylate synthase Plant Metabolic Network ISS

Expression Patterns of Glyma.05g211700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g211700
ParalogEvidenceComments
Glyma.08g018000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g211700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g37410 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05g211700
>Glyma.05g211700.1 sequence-type=CDS polypeptide=Glyma.05g211700.1.p locus=Glyma.05g211700 ID=Glyma.05g211700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGTTGATGGATGTGGACCAAACTCAATTGTTGTCTAAGATGGTCATCGGAGATGGACATGGTGAAGCATCACCATACTTTGATGGATGGAAGGCTTATGATGAAAACCCCTTTCATCCCAAAGAGAATCCTAACGGGGTTATCCAAATGGGTCTTGCTGAGAATCAGCTTACTTCTGATTTGGTTGAAGATTGGATACTGAATAACCCAGAGGCCTCCATTTGCACACCAGAAGGAATAAATGATTTCAGGGCCATAGCTAACTTTCAGGATTATCATGGTCTGCCCGAGTTCAGAAATGCTGTGGCTAAATTCATGGGTAGAACAAGAGGAAACAGAGTCACGTTTGATCCTGACCGTATTGTCATGAGCGGTGGAGCAACTGGAGCACACGAAGTCACTACCTTTTGTTTGGCAGACCCTGGTGACGCATTTTTGGTGCCCATTCCTTATTATCCAGGTTTTGACCGGGATTTGAGGTGGAGAACAGGAATTAAACTTGTTCCAGTTATGTGCGATAGCTCAAACAATTTCAAGTTGACAAAGCAAGCATTGGAAGATGCGTATGAGAAGGCCAAAGAGGATAATATAAGAGTAAAGGGCTTGCTCATCACCAATCCATCAAACCCATTAGGCACAGTCATGGACAGAAACACACTAAGAACCGTGATGAGCTTCATCAACGAGAAGCGTATCCACCTTGTATCTGATGAAATATACTCTGCAACAGTTTTTAGCCACCCCAGTTTCATAAGCATTGCTGAGATATTAGAGGAAGACACAGACATCGAATGTGACCGCAACCTCGTTCACATTGTTTATAGTCTTTCAAAGGATATGGGGTTCCCTGGCTTCAGAGTTGGCATCATATACTCTTACAATGATGCTGTGGTCCATTGTGCACGCAAAATGTCAAGCTTTGGATTGGTGTCAACACAGACTCAGTATCTTTTAGCATCAATGCTAAATGATGATGAGTTTGTGGAAAGTTTTCTGGTAGAGAGTGCAAAAAGGCTGGCACAAAGGCATAGAGTTTTCACTGGGGGGTTGGCCAAAGTTGGCATAAAGTGCTTGCAAAGCAATGCTGGTCTCTTTGTGTGGATGGATTTAAGGCAACTTCTCAAGAAGCCAACGCTTGACTCTGAAATGGAGCTTTGGAGAGTGATCATTGATGAGGTTAAGATCAATGTTTCACCTGGCTCCTCTTTCCATTGCACTGAGCCAGGGTGGTTTAGGGTGTGCTATGCCAACATGGATGATATGGCTGTGCAAATTGCATTGCAAAGAATTCGTAACTTTGTGCTTCAAAACAAGGAGATCATGGTGCCTAACAAGAAACATTGTTGGCACAGTAACTTGAGGTTGAGCCTCAAAACCAGAAGGTTTGATGATATCATGATGTCACCTCACTCCCCCATACCTCAGTCACCTCTGGTTAAAGCCACAATTTGA
Predicted protein sequences of Glyma.05g211700
>Glyma.05g211700.1.p sequence-type=predicted peptide transcript=Glyma.05g211700.1 locus=Glyma.05g211700 ID=Glyma.05g211700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGLMDVDQTQLLSKMVIGDGHGEASPYFDGWKAYDENPFHPKENPNGVIQMGLAENQLTSDLVEDWILNNPEASICTPEGINDFRAIANFQDYHGLPEFRNAVAKFMGRTRGNRVTFDPDRIVMSGGATGAHEVTTFCLADPGDAFLVPIPYYPGFDRDLRWRTGIKLVPVMCDSSNNFKLTKQALEDAYEKAKEDNIRVKGLLITNPSNPLGTVMDRNTLRTVMSFINEKRIHLVSDEIYSATVFSHPSFISIAEILEEDTDIECDRNLVHIVYSLSKDMGFPGFRVGIIYSYNDAVVHCARKMSSFGLVSTQTQYLLASMLNDDEFVESFLVESAKRLAQRHRVFTGGLAKVGIKCLQSNAGLFVWMDLRQLLKKPTLDSEMELWRVIIDEVKINVSPGSSFHCTEPGWFRVCYANMDDMAVQIALQRIRNFVLQNKEIMVPNKKHCWHSNLRLSLKTRRFDDIMMSPHSPIPQSPLVKATI*






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