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Report for Sequence Feature Glyma.05g202600

Feature Type:gene_model
Chromosome:Gm05
Start:38611186
stop:38613548
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g202600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G23660.1AT homolog of Medicago truncatula MTN3 JGI N/AIEA
GO:0008643GO-bp carbohydrate transport EnsemblGenomesN/AIEA
GO:0034219GO-bp carbohydrate transmembrane transport EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
GO:0051119GO-mf sugar transmembrane transporter activity EnsemblGenomesN/AIEA
KOG1623 KOG Multitransmembrane protein JGI N/AIEA
PTHR10791Panther RAG1-ACTIVATING PROTEIN 1 JGI N/AIEA
PF03083PFAM Sugar efflux transporter for intercellular exchange JGI N/AIEA

Expression Patterns of Glyma.05g202600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g202600 not represented in the dataset
Glyma.05g202600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g202600
ParalogEvidenceComments
Glyma.08g009900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g202600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g38351 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.05g202600
>Glyma.05g202600.2 sequence-type=transcript locus=Glyma.05g202600 ID=Glyma.05g202600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CACAAAACTAGAGCTACCTTCCCTTCACCCGAAACCATGGCTCACGCCAATCCTATGATTTTTGTTGTTGGAATTCTAGACCAACATTTTATCGAGTTTGTAAGAAGAAAACCACGGAAGGTTTCCAATCACTTCCTTACGTGGCTGCACTCTTCACTTCAATGCTTTGGATTTTTTATGCGTACATAAAGACGGGCGAAATACTTCTTATCACCATTAACGCATTCGGTTGTTTCATAGAGACAGTTTACCTTGTCATTTATATCATTTATTGCCCCAAGAAAGCTAGGTTCTTTACCTTCAAGATGATTTTCTTGTTCAACGTTGGGGTGATTTTCTTGGTGGTTCTTCTTACCCACGTTCTAGCAAAAGAACGAACAGCCCGTATCGAGCTTCTTGGATGGATTTGTGTTGTCCTTTCGACCAGTGTGTTTGCAGCACCTTTAAGCATTATCAAAGTGGTTATTCGTACCAAAAGTGTAGAGTTCATGCCTATTACTCTGTCACTCCTCCTCACAGTAAGTGCAACGATGTGGATGGCATACGGTATTCTCCTCAGGGACATCTATGTTACACTTCCGAACTTTGTGGGTATCACATTTGGAACGATTCAGATAGTGCTCTACTTAATATATAGAAAGAGCAAGCCCGTTAAGGATCAAAAGCTGCCAGAACACAAAAACCATGTTGTTAACGATGAAAACGCCAGCACAGCTGTGAGTGGTGAGAATCAGGGACCAAACACTACTGGATTCGTTGATATTGAGATTGGAGAGAAGAAGCAAGTTCAGGAACAAGCAGAGAAAAAACAGGACCAGCAGTTTGTTAATGCTCGTGACCAAACAGAACACAACAAAACAAGGGAAAGTTGAGAAGTTTAATGAAGGAATACATGAGCACGTGTTATGCCTCTCTCTCTCTGCCACCATGTGTTGATCAAATTCCTGTGAAATATTAAGAGGGTTAATGGGGGCAGAGGCGTTATACAATATTGATCAATCCATATCTATCTCTGTATCTCTTTTGCCTAGTTGTTAGTTTCTATTTTATGTAATCTCTGTTTTGTTTTCTCTGTTAAAGTAATAAAATAATAAAATAGAACTTGTCCCC
Coding sequences of Glyma.05g202600
>Glyma.05g202600.1 sequence-type=CDS polypeptide=Glyma.05g202600.1.p locus=Glyma.05g202600 ID=Glyma.05g202600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTTTGGATTTTTTATGCGTACATAAAGACGGGCGAAATACTTCTTATCACCATTAACGCATTCGGTTGTTTCATAGAGACAGTTTACCTTGTCATTTATATCATTTATTGCCCCAAGAAAGCTAGGTTCTTTACCTTCAAGATGATTTTCTTGTTCAACGTTGGGGTGATTTTCTTGGTGGTTCTTCTTACCCACGTTCTAGCAAAAGAACGAACAGCCCGTATCGAGCTTCTTGGATGGATTTGTGTTGTCCTTTCGACCAGTGTGTTTGCAGCACCTTTAAGCATTATCAAAGTGGTTATTCGTACCAAAAGTGTAGAGTTCATGCCTATTACTCTGTCACTCCTCCTCACAGTAAGTGCAACGATGTGGATGGCATACGGTATTCTCCTCAGGGACATCTATGTTACACTTCCGAACTTTGTGGGTATCACATTTGGAACGATTCAGATAGTGCTCTACTTAATATATAGAAAGAGCAAGCCCGTTAAGGATCAAAAGCTGCCAGAACACAAAAACCATGTTGTTAACGATGAAAACGCCAGCACAGCTGTGAGTGGTGAGAATCAGGGACCAAACACTACTGGATTCGTTGATATTGAGATTGGAGAGAAGAAGCAAGTTCAGGAACAAGCAGAGAAAAAACAGGACCAGCAGTTTGTTAATGCTCGTGACCAAACAGAACACAACAAAACAAGGGAAAGTTGA

>Glyma.05g202600.2 sequence-type=CDS polypeptide=Glyma.05g202600.2.p locus=Glyma.05g202600 ID=Glyma.05g202600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTTTGGATTTTTTATGCGTACATAAAGACGGGCGAAATACTTCTTATCACCATTAACGCATTCGGTTGTTTCATAGAGACAGTTTACCTTGTCATTTATATCATTTATTGCCCCAAGAAAGCTAGGTTCTTTACCTTCAAGATGATTTTCTTGTTCAACGTTGGGGTGATTTTCTTGGTGGTTCTTCTTACCCACGTTCTAGCAAAAGAACGAACAGCCCGTATCGAGCTTCTTGGATGGATTTGTGTTGTCCTTTCGACCAGTGTGTTTGCAGCACCTTTAAGCATTATCAAAGTGGTTATTCGTACCAAAAGTGTAGAGTTCATGCCTATTACTCTGTCACTCCTCCTCACAGTAAGTGCAACGATGTGGATGGCATACGGTATTCTCCTCAGGGACATCTATGTTACACTTCCGAACTTTGTGGGTATCACATTTGGAACGATTCAGATAGTGCTCTACTTAATATATAGAAAGAGCAAGCCCGTTAAGGATCAAAAGCTGCCAGAACACAAAAACCATGTTGTTAACGATGAAAACGCCAGCACAGCTGTGAGTGGTGAGAATCAGGGACCAAACACTACTGGATTCGTTGATATTGAGATTGGAGAGAAGAAGCAAGTTCAGGAACAAGCAGAGAAAAAACAGGACCAGCAGTTTGTTAATGCTCGTGACCAAACAGAACACAACAAAACAAGGGAAAGTTGA
Predicted protein sequences of Glyma.05g202600
>Glyma.05g202600.1.p sequence-type=predicted peptide transcript=Glyma.05g202600.1 locus=Glyma.05g202600 ID=Glyma.05g202600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLWIFYAYIKTGEILLITINAFGCFIETVYLVIYIIYCPKKARFFTFKMIFLFNVGVIFLVVLLTHVLAKERTARIELLGWICVVLSTSVFAAPLSIIKVVIRTKSVEFMPITLSLLLTVSATMWMAYGILLRDIYVTLPNFVGITFGTIQIVLYLIYRKSKPVKDQKLPEHKNHVVNDENASTAVSGENQGPNTTGFVDIEIGEKKQVQEQAEKKQDQQFVNARDQTEHNKTRES*

>Glyma.05g202600.2.p sequence-type=predicted peptide transcript=Glyma.05g202600.2 locus=Glyma.05g202600 ID=Glyma.05g202600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLWIFYAYIKTGEILLITINAFGCFIETVYLVIYIIYCPKKARFFTFKMIFLFNVGVIFLVVLLTHVLAKERTARIELLGWICVVLSTSVFAAPLSIIKVVIRTKSVEFMPITLSLLLTVSATMWMAYGILLRDIYVTLPNFVGITFGTIQIVLYLIYRKSKPVKDQKLPEHKNHVVNDENASTAVSGENQGPNTTGFVDIEIGEKKQVQEQAEKKQDQQFVNARDQTEHNKTRES*






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