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Report for Sequence Feature Glyma.05g200500

Feature Type:gene_model
Chromosome:Gm05
Start:38415657
stop:38418787
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g200500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G25080.1AT magnesium-protoporphyrin IX methyltransferase JGI N/AIEA
GO:0006479GO-bp protein methylation JGI N/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0015995GO-bp chlorophyll biosynthetic process EnsemblGenomesN/AIEA
GO:0015995GO-bp chlorophyll biosynthetic process JGI N/AIEA
GO:0032259GO-bp methylation EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm JGI N/AIEA
GO:0008168GO-mf methyltransferase activity JGI N/AIEA
GO:0008276GO-mf protein methyltransferase activity JGI N/AIEA
GO:0046406GO-mf magnesium protoporphyrin IX methyltransferase activity EnsemblGenomesN/AIEA
GO:0046406GO-mf magnesium protoporphyrin IX methyltransferase activity JGI N/AIEA
KOG1270 KOG Methyltransferases JGI N/AIEA
PTHR10108Panther METHYLTRANSFERASE JGI N/AIEA
PTHR10108:SF59Panther JGI N/AIEA
PF05175PFAM Methyltransferase small domain JGI N/AIEA
PF07109PFAM Magnesium-protoporphyrin IX methyltransferase C-terminus JGI N/AIEA
CHLOROPHYLL-SYNSoyCyc9 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) Plant Metabolic Network ISS
GN7V-67655SoyCyc9-rxn S-adenosyl-L-methionine:Mg-protoporphyrin IX methyltransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.05g200500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g200500 not represented in the dataset
Glyma.05g200500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g200500
ParalogEvidenceComments
Glyma.08g007900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g200500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g38570 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.05g200500
>Glyma.05g200500.2 sequence-type=transcript locus=Glyma.05g200500 ID=Glyma.05g200500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTTACCTAATTGTTTCATTCACACACACACAAAAAAAAAGTACCGTTTTAATCTCAACCGTGGATATTTCCTTATTAAATCAACGGTAAAATGCTATAGGCATACAGATGCAGTCGTCTAGTTTGGTGCACAGCGGAACCCATCTGGAGAAGTAGGACCCACGAGAATCAGCTCGAGACATGGAAACTGGAATGTTATCTTATCTGGATAACATTTCAACCACTTACTCCACTCTTGAGTCCTTCACACTCGACGCTATCACCGGCCGGTAACGTCACACAAACCCAAAATCACAATGGCGTTCTCATCGTCCCTATGGTCTTCCCTCTTCGTTGCAAACCCAAACAGAACCGCCATTTCCACTCGATTCTCTCACAAACCGCCCAAACTCCCTCTCTCGCCGGCGTTCGCCATCCCGCCGCTCTCCACGGCCACTGCGGCGGACGTCTCGGGCGCCATCGACGGGACTACGATCGCGGTGGTGAGCGGAGGATTCGTggcggcactggcggcggtgctgtcgctgacggacccggagcggcggcggcagttgcaggcggaggaggtgggcggcggcgACAAGGAGGTGGTGAGGGAGTACTTCAACAACTCCGGGTTCCAGCGCTGGAAGAAGATCTACGGCGACACCGACGAGGTGAACCGGGTTCAGCGCGACATTAGGTTGGGCCACGCCAAGACCGTGGAGAACACGCTGAGCATGTTGAAGGACGAAGGTTCCCTTCAGGGCGTTACGGTTTGCGACGCTGGGTGCGGTACCGGTTCTCTCTCTATTCCTCTTGCCAAAGAGGGCGCTGTTGTGTTCGCCAGTGATATCTCCGCCGCTATGGTTGCCGAGGCTGAGAAACAGGCAAAAGAACAGCTTGCAACCAGTGAAGATGGATCTGTGCCCGTGATGCCTAAGTTTGTAGTGAAGGATTTAGAGAGCTTGGATGGCAAGTATGATACGGTGGTCTGCCTCGATGTCTTGATTCATTACCCACAACATAAAGCCGATGGGATGATTGCACACCTTGCATCATTGGCCAACAACCGATTGATTCTGAGTTTTGCCCCAAAGACGTTTTATTATGATCTGCTAAAGAGGGTTGGAGAGTTGTTCCCTGGTCCTTCAAAGGCAACAAGAGCATATCTTCACTCTGAGGCAGATGTAGAGAGAGCATTGCAAAAGGTTGGCTGGACCATAAGGAAGAGAGGCTTAACCACTACCCAATTTTACTTTGCTAGGCTTATTGAGGCTGTTCCTATGTAGTGGGGATTGAAAGCCTAGAAGATGCTGACGAATTGAGGCTATGTTTTCTGGGAGAAATAGAGTGAAGTGGTTCATGATAATTTGTGTGGAGCTAGTGCCTAGTGAGTTACCGGTCCATTGGGTTGGTGGAATGGAGGCAAGCTCCCTTTAAGCTGTTCAGAAGTTACAGCGATTATTACTCAAGGGTAGTAATTAGTTCCTGTTCCTTCTGAAAACCTGAAC

>Glyma.05g200500.3 sequence-type=transcript locus=Glyma.05g200500 ID=Glyma.05g200500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTTACCTAATTGTTTCATTCACACACACACAAAAAAAAAGTACCGTTTTAATCTCAACCGTGGATATTTCCTTATTAAATCAACGGTAAAATGCTATAGGCATACAGATGCAGTCGTCTAGTTTGGTGCACAGCGGAACCCATCTGGAGAAGTAGGACCCACGAGAATCAGCTCGAGACATGGAAACTGGAATGTTATCTTATCTGGATAACATTTCAACCACTTACTCCACTCTTGAGTCCTTCACACTCGACGCTATCACCGGCCGGTAACGTCACACAAACCCAAAATCACAATGGCGTTCTCATCGTCCCTATGGTCTTCCCTCTTCGTTGCAAACCCAAACAGAACCGCCATTTCCACTCGATTCTCTCACAAACCGCCCAAACTCCCTCTCTCGCCGGCGTTCGCCATCCCGCCGCTCTCCACGGCCACTGCGGCGGACGTCTCGGGCGCCATCGACGGGACTACGATCGCGGTGGTGAGCGGAGGATTCGTggcggcactggcggcggtgctgtcgctgacggacccggagcggcggcggcagttgcaggcggaggaggtgggcggcggcgACAAGGAGGTGGTGAGGGAGTACTTCAACAACTCCGGGTTCCAGCGCTGGAAGAAGATCTACGGCGACACCGACGAGGTGAACCGGGTTCAGCGCGACATTAGGTTGGGCCACGCCAAGACCGTGGAGAACACGCTGAGCATGTTGAAGGACGAAGGTTCCCTTCAGGGCGTTACGGTTTGCGACGCTGGGTGCGGTACCGGTTCTCTCTCTATTCCTCTTGCCAAAGAGGGCGCTGTTGTGTTCGCCAGTGATATCTCCGCCGCTATGGTTGCCGAGGCTGAGAAACAGGCAAAAGAACAGCTTGCAACCAGTGAAGATGGATCTGTGCCCGTGATGCCTAAGTTTGTAGTGAAGGATTTAGAGAGCTTGGATGGCAAGTATGATACGGTGGTCTGCCTCGATGTCTTGATTCATTACCCACAACATAAAGCCGATGGGATGATTGCACACCTTGCATCATTGGCCAACAACCGATTGATTCTGAGTTTTGCCCCAAAGACGTTTTATTATGATCTGCTAAAGAGGGTTGGAGAGTTGTTCCCTGGTCCTTCAAAGGCAACAAGAGCATATCTTCACTCTGAGGCAGATGTAGAGAGAGCATTGCAAAAGGTTGGCTGGACCATAAGGAAGAGAGGCTTAACCACTACCCAATTTTACTTTGCTAGGCTTATTGAGGCTGTTCCTATGTAGTGGGGATTGAAAGCCTAGAAGATGCTGACGAATTGAGGCTATGTTTTCTGGGAGAAATAGAGTGAAGTGGTTCATGATAATTTGTGTGGAGCTAGTGCCTAGTGAGTTACCGGTCCATTGGGTTGGTGGAATGGAGGCAAGCTCCCTTTAAGCTGTTCAGAAGTTACAGCGATTATTACTCAAGGGTAGTAATTAGTTCCTGTATTGCATTTTTTTTATAAAAGTGataatgataataataataataataataataataTCACACTTTTTGATACTCTTTTTAATAATGTCTTTATTATTGATTAAAATCTCATGCTAGCCTCCTTAACAGAGACCGGAAGTCTG
Coding sequences of Glyma.05g200500
>Glyma.05g200500.1 sequence-type=CDS polypeptide=Glyma.05g200500.1.p locus=Glyma.05g200500 ID=Glyma.05g200500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTTCTCATCGTCCCTATGGTCTTCCCTCTTCGTTGCAAACCCAAACAGAACCGCCATTTCCACTCGATTCTCTCACAAACCGCCCAAACTCCCTCTCTCGCCGGCGTTCGCCATCCCGCCGCTCTCCACGGCCACTGCGGCGGACGTCTCGGGCGCCATCGACGGGACTACGATCGCGGTGGTGAGCGGAGGATTCGTGGCGGCACTGGCGGCGGTGCTGTCGCTGACGGACCCGGAGCGGCGGCGGCAGTTGCAGGCGGAGGAGGTGGGCGGCGGCGACAAGGAGGTGGTGAGGGAGTACTTCAACAACTCCGGGTTCCAGCGCTGGAAGAAGATCTACGGCGACACCGACGAGGTGAACCGGGTTCAGCGCGACATTAGGTTGGGCCACGCCAAGACCGTGGAGAACACGCTGAGCATGTTGAAGGACGAAGGTTCCCTTCAGGGCGTTACGGTTTGCGACGCTGGGTGCGGTACCGGTTCTCTCTCTATTCCTCTTGCCAAAGAGGGCGCTGTTGTGTTCGCCAGTGATATCTCCGCCGCTATGGTTGCCGAGGCTGAGAAACAGGCAAAAGAACAGCTTGCAACCAGTGAAGATGGATCTGTGCCCGTGATGCCTAAGTTTGTAGTGAAGGATTTAGAGAGCTTGGATGGCAAGTATGATACGGTGGTCTGCCTCGATGTCTTGATTCATTACCCACAACATAAAGCCGATGGGATGATTGCACACCTTGCATCATTGGCCAACAACCGATTGATTCTGAGTTTTGCCCCAAAGACGTTTTATTATGATCTGCTAAAGAGGGTTGGAGAGTTGTTCCCTGGTCCTTCAAAGGCAACAAGAGCATATCTTCACTCTGAGGCAGATGTAGAGAGAGCATTGCAAAAGGTTGGCTGGACCATAAGGAAGAGAGGCTTAACCACTACCCAATTTTACTTTGCTAGGCTTATTGAGGCTGTTCCTATGTAG

>Glyma.05g200500.2 sequence-type=CDS polypeptide=Glyma.05g200500.2.p locus=Glyma.05g200500 ID=Glyma.05g200500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTTCTCATCGTCCCTATGGTCTTCCCTCTTCGTTGCAAACCCAAACAGAACCGCCATTTCCACTCGATTCTCTCACAAACCGCCCAAACTCCCTCTCTCGCCGGCGTTCGCCATCCCGCCGCTCTCCACGGCCACTGCGGCGGACGTCTCGGGCGCCATCGACGGGACTACGATCGCGGTGGTGAGCGGAGGATTCGTGGCGGCACTGGCGGCGGTGCTGTCGCTGACGGACCCGGAGCGGCGGCGGCAGTTGCAGGCGGAGGAGGTGGGCGGCGGCGACAAGGAGGTGGTGAGGGAGTACTTCAACAACTCCGGGTTCCAGCGCTGGAAGAAGATCTACGGCGACACCGACGAGGTGAACCGGGTTCAGCGCGACATTAGGTTGGGCCACGCCAAGACCGTGGAGAACACGCTGAGCATGTTGAAGGACGAAGGTTCCCTTCAGGGCGTTACGGTTTGCGACGCTGGGTGCGGTACCGGTTCTCTCTCTATTCCTCTTGCCAAAGAGGGCGCTGTTGTGTTCGCCAGTGATATCTCCGCCGCTATGGTTGCCGAGGCTGAGAAACAGGCAAAAGAACAGCTTGCAACCAGTGAAGATGGATCTGTGCCCGTGATGCCTAAGTTTGTAGTGAAGGATTTAGAGAGCTTGGATGGCAAGTATGATACGGTGGTCTGCCTCGATGTCTTGATTCATTACCCACAACATAAAGCCGATGGGATGATTGCACACCTTGCATCATTGGCCAACAACCGATTGATTCTGAGTTTTGCCCCAAAGACGTTTTATTATGATCTGCTAAAGAGGGTTGGAGAGTTGTTCCCTGGTCCTTCAAAGGCAACAAGAGCATATCTTCACTCTGAGGCAGATGTAGAGAGAGCATTGCAAAAGGTTGGCTGGACCATAAGGAAGAGAGGCTTAACCACTACCCAATTTTACTTTGCTAGGCTTATTGAGGCTGTTCCTATGTAG

>Glyma.05g200500.3 sequence-type=CDS polypeptide=Glyma.05g200500.3.p locus=Glyma.05g200500 ID=Glyma.05g200500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTTCTCATCGTCCCTATGGTCTTCCCTCTTCGTTGCAAACCCAAACAGAACCGCCATTTCCACTCGATTCTCTCACAAACCGCCCAAACTCCCTCTCTCGCCGGCGTTCGCCATCCCGCCGCTCTCCACGGCCACTGCGGCGGACGTCTCGGGCGCCATCGACGGGACTACGATCGCGGTGGTGAGCGGAGGATTCGTGGCGGCACTGGCGGCGGTGCTGTCGCTGACGGACCCGGAGCGGCGGCGGCAGTTGCAGGCGGAGGAGGTGGGCGGCGGCGACAAGGAGGTGGTGAGGGAGTACTTCAACAACTCCGGGTTCCAGCGCTGGAAGAAGATCTACGGCGACACCGACGAGGTGAACCGGGTTCAGCGCGACATTAGGTTGGGCCACGCCAAGACCGTGGAGAACACGCTGAGCATGTTGAAGGACGAAGGTTCCCTTCAGGGCGTTACGGTTTGCGACGCTGGGTGCGGTACCGGTTCTCTCTCTATTCCTCTTGCCAAAGAGGGCGCTGTTGTGTTCGCCAGTGATATCTCCGCCGCTATGGTTGCCGAGGCTGAGAAACAGGCAAAAGAACAGCTTGCAACCAGTGAAGATGGATCTGTGCCCGTGATGCCTAAGTTTGTAGTGAAGGATTTAGAGAGCTTGGATGGCAAGTATGATACGGTGGTCTGCCTCGATGTCTTGATTCATTACCCACAACATAAAGCCGATGGGATGATTGCACACCTTGCATCATTGGCCAACAACCGATTGATTCTGAGTTTTGCCCCAAAGACGTTTTATTATGATCTGCTAAAGAGGGTTGGAGAGTTGTTCCCTGGTCCTTCAAAGGCAACAAGAGCATATCTTCACTCTGAGGCAGATGTAGAGAGAGCATTGCAAAAGGTTGGCTGGACCATAAGGAAGAGAGGCTTAACCACTACCCAATTTTACTTTGCTAGGCTTATTGAGGCTGTTCCTATGTAG
Predicted protein sequences of Glyma.05g200500
>Glyma.05g200500.1.p sequence-type=predicted peptide transcript=Glyma.05g200500.1 locus=Glyma.05g200500 ID=Glyma.05g200500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAFSSSLWSSLFVANPNRTAISTRFSHKPPKLPLSPAFAIPPLSTATAADVSGAIDGTTIAVVSGGFVAALAAVLSLTDPERRRQLQAEEVGGGDKEVVREYFNNSGFQRWKKIYGDTDEVNRVQRDIRLGHAKTVENTLSMLKDEGSLQGVTVCDAGCGTGSLSIPLAKEGAVVFASDISAAMVAEAEKQAKEQLATSEDGSVPVMPKFVVKDLESLDGKYDTVVCLDVLIHYPQHKADGMIAHLASLANNRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHSEADVERALQKVGWTIRKRGLTTTQFYFARLIEAVPM*

>Glyma.05g200500.2.p sequence-type=predicted peptide transcript=Glyma.05g200500.2 locus=Glyma.05g200500 ID=Glyma.05g200500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAFSSSLWSSLFVANPNRTAISTRFSHKPPKLPLSPAFAIPPLSTATAADVSGAIDGTTIAVVSGGFVAALAAVLSLTDPERRRQLQAEEVGGGDKEVVREYFNNSGFQRWKKIYGDTDEVNRVQRDIRLGHAKTVENTLSMLKDEGSLQGVTVCDAGCGTGSLSIPLAKEGAVVFASDISAAMVAEAEKQAKEQLATSEDGSVPVMPKFVVKDLESLDGKYDTVVCLDVLIHYPQHKADGMIAHLASLANNRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHSEADVERALQKVGWTIRKRGLTTTQFYFARLIEAVPM*

>Glyma.05g200500.3.p sequence-type=predicted peptide transcript=Glyma.05g200500.3 locus=Glyma.05g200500 ID=Glyma.05g200500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAFSSSLWSSLFVANPNRTAISTRFSHKPPKLPLSPAFAIPPLSTATAADVSGAIDGTTIAVVSGGFVAALAAVLSLTDPERRRQLQAEEVGGGDKEVVREYFNNSGFQRWKKIYGDTDEVNRVQRDIRLGHAKTVENTLSMLKDEGSLQGVTVCDAGCGTGSLSIPLAKEGAVVFASDISAAMVAEAEKQAKEQLATSEDGSVPVMPKFVVKDLESLDGKYDTVVCLDVLIHYPQHKADGMIAHLASLANNRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHSEADVERALQKVGWTIRKRGLTTTQFYFARLIEAVPM*






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