Glyma.05g194900

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Report for Sequence Feature Glyma.05g194900

Feature Type:	gene_model
Chromosome:	Gm05
Start:	37931079
stop:	37935695
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.05g194900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G16730.1	AT	glycosyl hydrolase family 35 protein	JGI	N/A	IEA
GO:0005975	GO-bp	carbohydrate metabolic process	EnsemblGenomes	N/A	IEA
GO:0005975	GO-bp	carbohydrate metabolic process	JGI	N/A	IEA
GO:0005618	GO-cc	cell wall	EnsemblGenomes	N/A	IEA
GO:0005773	GO-cc	vacuole	EnsemblGenomes	N/A	IEA
GO:0004553	GO-mf	hydrolase activity, hydrolyzing O-glycosyl compounds	EnsemblGenomes	N/A	IEA
GO:0004553	GO-mf	hydrolase activity, hydrolyzing O-glycosyl compounds	JGI	N/A	IEA
GO:0004565	GO-mf	beta-galactosidase activity	EnsemblGenomes	N/A	IEA
PTHR23421	Panther	BETA-GALACTOSIDASE RELATED	JGI	N/A	IEA
PTHR23421:SF2	Panther		JGI	N/A	IEA
PF01301	PFAM	Glycosyl hydrolases family 35	JGI	N/A	IEA
GN7V-42417	SoyCyc9-rxn	Enzyme name not determined	Plant Metabolic Network		ISS

Expression Patterns of Glyma.05g194900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g194900 not represented in the dataset	Glyma.05g194900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.05g194900

Paralog	Evidence	Comments
Glyma.08g002500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Transcripts of Glyma.05g194900

Limit To All Plant Sequences

>Glyma.05g194900.2 sequence-type=transcript locus=Glyma.05g194900 ID=Glyma.05g194900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGGCCAGCTTTGATAGCTAAAGCAAAAGAAGGAGGACTCGACGTGATTCAGACATACGTATTTTGGAATCTACATGAGCCTCAACATGGAAGGatacaataTATATTGAATTTCAACAACTTGTATTTAAAAGTAAAGAAGGGATTCCCATTTTGGTTACATGATGTTCCTGACATTGTATACCGAACTGACAATGAACCGTTCACGATTGATAATGAATATCAATACGTGGAAAAAGCATTTGGAGAAGAAGGATCGCAGTATGTTGAGTGGGCTGCGAAAATGGAAGTGGGCCTCAAGACTGGCGTACCGTGGGTTATGTGCAAGCAAACTGACGTTCCTGATCCACTGATTAATGCATGCAACGGGATGAGATGTGGAGAAACTTTTACAGGACCAAACTCCCCCAATAACTATCAAGTTTATGGAGGTGAGCCATACATAAGGTCTGCCGAAGACATTGCATTCCGCGTCACTCTTTTTATTGCAAGAAAAAATGGAAGCTATAGCAATTTCTCTTTAGGTCAACTACAGGAGGGTTATGTTTTTGAAGAAGAAGGAAAATGTGTTGCTTTCCTTGTAAACAATGATCACGTGAAAATGTTCACCGTCCAATTCCGCAACAGATCATACGAATTGCCTCCGAAGTCAATTAGTATTTTATCAGATTGTCAAAATGTGACTTTCAATACAGCAACGGTAAATACAAAGAGCAACAGAAGAATCATTAGTCCAATACAAACTTTCAGCTCGGCCGATTAATGGGAGCAATTTCTGGATGTCATCCCTAACCTTGACCGGACTACGTTAATATCAAACTCATTACTTGAGCAAATGAACGTAACCAAAGATACATCAGATTACCTTTGGTGTACTCTTAGATTAGTTATACATAAATACATCCACTTATC

Coding sequences of Glyma.05g194900

Limit To All Plant Sequences

>Glyma.05g194900.1 sequence-type=CDS polypeptide=Glyma.05g194900.1.p locus=Glyma.05g194900 ID=Glyma.05g194900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGGCCAGCTTTGATAGCTAAAGCAAAAGAAGGAGGACTCGACGTGATTCAGACATACGTATTTTGGAATCTACATGAGCCTCAACATGGAAGGATACAATATATATTGAATTTCAACAACTTGTATTTAAAAGTAAAGAAGGGATTCCCATTTTGGTTACATGATGTTCCTGACATTGTATACCGAACTGACAATGAACCGTTCACGATTGATAATGAATATCAATACGTGGAAAAAGCATTTGGAGAAGAAGGATCGCAGTATGTTGAGTGGGCTGCGAAAATGGAAGTGGGCCTCAAGACTGGCGTACCGTGGGTTATGTGCAAGCAAACTGACGTTCCTGATCCACTGATTAATGCATGCAACGGGATGAGATGTGGAGAAACTTTTACAGGACCAAACTCCCCCAATAACTATCAAGTTTATGGAGGTGAGCCATACATAAGGTCTGCCGAAGACATTGCATTCCGCGTCACTCTTTTTATTGCAAGAAAAAATGGAAGCTATAGCAATTTCTCTTTAGGTCAACTACAGGAGGGTTATGTTTTTGAAGAAGAAGGAAAATGTGTTGCTTTCCTTGTAAACAATGATCACGTGAAAATGTTCACCGTCCAATTCCGCAACAGATCATACGAATTGCCTCCGAAGTCAATTAGTATTTTATCAGATTGTCAAAATGTGACTTTCAATACAGCAACGCAATTTCTGGATGTCATCCCTAACCTTGACCGGACTACGTTAATATCAAACTCATTACTTGAGCAAATGAACGTAACCAAAGATACATCAGATTACCTTTGGTTTGAACATAATTTATCTTGCAGTGAATCAAAACTCAGTGTTCAGTCTGCTGCTCATGTTACCCATGCTTTTGCAGATGGCACATACCTAGGAGGAGCACACGGGAGTCAAGATGTGAAGTCATTCACCACACAGGTCCCCCTAACCCTAAATGAAGGGGCAAATAATATATCTATACTAAGCGTTATGGATGCAGGAGCATTTCTTGAACGAAGGCCTAGTATTATAAAAGCTTGA

>Glyma.05g194900.2 sequence-type=CDS polypeptide=Glyma.05g194900.2.p locus=Glyma.05g194900 ID=Glyma.05g194900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGGCCAGCTTTGATAGCTAAAGCAAAAGAAGGAGGACTCGACGTGATTCAGACATACGTATTTTGGAATCTACATGAGCCTCAACATGGAAGGATACAATATATATTGAATTTCAACAACTTGTATTTAAAAGTAAAGAAGGGATTCCCATTTTGGTTACATGATGTTCCTGACATTGTATACCGAACTGACAATGAACCGTTCACGATTGATAATGAATATCAATACGTGGAAAAAGCATTTGGAGAAGAAGGATCGCAGTATGTTGAGTGGGCTGCGAAAATGGAAGTGGGCCTCAAGACTGGCGTACCGTGGGTTATGTGCAAGCAAACTGACGTTCCTGATCCACTGATTAATGCATGCAACGGGATGAGATGTGGAGAAACTTTTACAGGACCAAACTCCCCCAATAACTATCAAGTTTATGGAGGTGAGCCATACATAAGGTCTGCCGAAGACATTGCATTCCGCGTCACTCTTTTTATTGCAAGAAAAAATGGAAGCTATAGCAATTTCTCTTTAGGTCAACTACAGGAGGGTTATGTTTTTGAAGAAGAAGGAAAATGTGTTGCTTTCCTTGTAAACAATGATCACGTGAAAATGTTCACCGTCCAATTCCGCAACAGATCATACGAATTGCCTCCGAAGTCAATTAGTATTTTATCAGATTGTCAAAATGTGACTTTCAATACAGCAACGGTAAATACAAAGAGCAACAGAAGAATCATTAGTCCAATACAAACTTTCAGCTCGGCCGATTAA

Predicted protein sequences of Glyma.05g194900

Limit To All Plant Sequences

>Glyma.05g194900.1.p sequence-type=predicted peptide transcript=Glyma.05g194900.1 locus=Glyma.05g194900 ID=Glyma.05g194900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MWPALIAKAKEGGLDVIQTYVFWNLHEPQHGRIQYILNFNNLYLKVKKGFPFWLHDVPDIVYRTDNEPFTIDNEYQYVEKAFGEEGSQYVEWAAKMEVGLKTGVPWVMCKQTDVPDPLINACNGMRCGETFTGPNSPNNYQVYGGEPYIRSAEDIAFRVTLFIARKNGSYSNFSLGQLQEGYVFEEEGKCVAFLVNNDHVKMFTVQFRNRSYELPPKSISILSDCQNVTFNTATQFLDVIPNLDRTTLISNSLLEQMNVTKDTSDYLWFEHNLSCSESKLSVQSAAHVTHAFADGTYLGGAHGSQDVKSFTTQVPLTLNEGANNISILSVMDAGAFLERRPSIIKA*

>Glyma.05g194900.2.p sequence-type=predicted peptide transcript=Glyma.05g194900.2 locus=Glyma.05g194900 ID=Glyma.05g194900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MWPALIAKAKEGGLDVIQTYVFWNLHEPQHGRIQYILNFNNLYLKVKKGFPFWLHDVPDIVYRTDNEPFTIDNEYQYVEKAFGEEGSQYVEWAAKMEVGLKTGVPWVMCKQTDVPDPLINACNGMRCGETFTGPNSPNNYQVYGGEPYIRSAEDIAFRVTLFIARKNGSYSNFSLGQLQEGYVFEEEGKCVAFLVNNDHVKMFTVQFRNRSYELPPKSISILSDCQNVTFNTATVNTKSNRRIISPIQTFSSAD*

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