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Report for Sequence Feature Glyma.05g194400

Feature Type:gene_model
Chromosome:Gm05
Start:37891664
stop:37898357
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g194400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G63860.1AT Regulator of chromosome condensation (RCC1) family protein JGI N/AIEA
GO:0007165GO-bp signal transduction EnsemblGenomesN/AIEA
GO:0010224GO-bp response to UV-B EnsemblGenomesN/AIEA
GO:0009881GO-mf photoreceptor activity EnsemblGenomesN/AIEA
GO:0042803GO-mf protein homodimerization activity EnsemblGenomesN/AIEA
KOG1427 KOG Uncharacterized conserved protein, contains RCC1 domain JGI N/AIEA
PTHR22870Panther REGULATOR OF CHROMOSOME CONDENSATION JGI N/AIEA
PTHR22870:SF27Panther JGI N/AIEA
PF00415PFAM Regulator of chromosome condensation (RCC1) repeat JGI N/AIEA

Expression Patterns of Glyma.05g194400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g194400
ParalogEvidenceComments
Glyma.08g002200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g194400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g32790 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.05g194400
>Glyma.05g194400.2 sequence-type=transcript locus=Glyma.05g194400 ID=Glyma.05g194400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTATTCTTCTTCGTATCCATGTCCATGGTGGAAATGTTGTTTGTTCGTGGGGACGAGGAGAGGATGGACAGTTAGGCCATGGTGACACTGATGATCGACTATTTCCTACAAAACTGAGTGCATTGGATGGCCAAGACATAATATGTGTTACTTGTGGAGCTGATCATACTATGGCACGTTCTGAGTCTGGCAGGGATGTATATAGTTGGGGATGGGGTGACTTTGGAAGGTTGGGTCATGGTGATCATAGTGACTTGCTCATTCCTCATCCCATAAAAGCATTACAGGGTCTAATGATACAACAAATTGCCTGTGGGGACAGTCATTGTTTGGCAGTTACCATGGACAGCCAGGTGCTGAGTTGGGGACGCAATCAAAATGGTGAACTTGGACTTGGAACCGCAGAGGACTCTCTTCTGCCACAAAAAATTCAAATTTTTGAGGAAATACCTATCAAAATGGTTGCTGCTGGTGCTGAACATAGTGTAGCAATCACTAAAGATGGGAATTTGTATGGATGGGGCTGGGGCCGATATGGAAACTTGGGATTGGGTGACAGAAACGATCGATTGCTGCCTGAGAAAGTGACTGTTGATGGTGACAAGATGGCCATGGTTGCTTGTGGCTGGCGGCACACAATATGTGTTTCATCTTCTGGTGGATTATACACAAATGGATGGGGCAAATACGGCCAGCTAGGACATGGGGATTTTGAGGATCATCTTGTGCCTCGCAAGGTTCAAGCCTTGAGTGATAAGTTCATTTCGCAGGTATCAGGTGGGTGGAGGCATAGTATGGCACTCACGTCTAGTGGACAACTTTTGGGCTGGGGATGGAATAAGTTCGGACAGATTGGAGTTGGTAACAATTTTGATTGTTGCTCTCCCATGCAAGTGAACTTTCCCCATGATCAGAAAGTACAAATGATCTCATGCGGGTGGAGACACACGATTGCTGTTACTGAACGTGAGAATGTATATTCTTGGGGAAGAGGAGCAAATGGACAACTTGGGAATGGAGAAACCATAGACCGCAATGTTCCAACAATTATTGAGGCCTTCAGTGTTGATGGATCTTCCGGACAGCACATAGAATCCTCAAAACCTTATCCATCATCAGGGAAATCCTCGTCCTCCATATCAGAGAGATATGCAATTGTTCCAGATGAAACTGCCTCGGGATCACAACCTACAACTTCAGAAGAGGGAAATAGGCATGATACCAGTGTCCCTGAAAGTGATGTCAATTGATAGCACATCAATAATAAGTTAATGAGAATGGTGTTCCAATTAGGGAGAGCAGCATGCATAATAAGGAGCTGAGGATAAGGATAAATATGTGCATAAGCAGTAGCGTTGCATGGGAGGCTGTTATGTGTGAGTGTTAATTATGAACTAGTGCATGTATCAGTTGTTATGATGAGTCAGTATGTTTGTTGCGTGTATTGGTTACAATATGGTTTTTTAAAATATGGCTTGGAACATTCTCTGCATGATTTATATTAGTAATAAATATAGAAATCATTCCCTATTTTG

>Glyma.05g194400.3 sequence-type=transcript locus=Glyma.05g194400 ID=Glyma.05g194400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACATCATGAAGGTGGAGTATTTGACCTTGTTTCCTTCAAGAGCAAGTTTGATTTGGGGTGACTTTGGAAGGTTGGGTCATGGTGATCATAGTGACTTGCTCATTCCTCATCCCATAAAAGCATTACAGGGTCTAATGATACAACAAATTGCCTGTGGGGACAGTCATTGTTTGGCAGTTACCATGGACAGCCAGGTGCTGAGTTGGGGACGCAATCAAAATGGTGAACTTGGACTTGGAACCGCAGAGGACTCTCTTCTGCCACAAAAAATTCAAATTTTTGAGGAAATACCTATCAAAATGGTTGCTGCTGGTGCTGAACATAGTGTAGCAATCACTAAAGATGGGAATTTGTATGGATGGGGCTGGGGCCGATATGGAAACTTGGGATTGGGTGACAGAAACGATCGATTGCTGCCTGAGAAAGTGACTGTTGATGGTGACAAGATGGCCATGGTTGCTTGTGGCTGGCGGCACACAATATGTGTTTCATCTTCTGGTGGATTATACACAAATGGATGGGGCAAATACGGCCAGCTAGGACATGGGGATTTTGAGGATCATCTTGTGCCTCGCAAGGTTCAAGCCTTGAGTGATAAGTTCATTTCGCAGGTATCAGGTGGGTGGAGGCATAGTATGGCACTCACGTCTAGTGGACAACTTTTGGGCTGGGGATGGAATAAGTTCGGACAGATTGGAGTTGGTAACAATTTTGATTGTTGCTCTCCCATGCAAGTGAACTTTCCCCATGATCAGAAAGTACAAATGATCTCATGCGGGTGGAGACACACGATTGCTGTTACTGAACGTGAGAATGTATATTCTTGGGGAAGAGGAGCAAATGGACAACTTGGGAATGGAGAAACCATAGACCGCAATGTTCCAACAATTATTGAGGCCTTCAGTGTTGATGGATCTTCCGGACAGCACATAGAATCCTCAAAACCTTATCCATCATCAGGGAAATCCTCGTCCTCCATATCAGAGAGATATGCAATTGTTCCAGATGAAACTGCCTCGGGATCACAACCTACAACTTCAGAAGAGGGAAATAGGCATGATACCAGTGTCCCTGAAAGTGATGTCAATTGATAGCACATCAATAATAAGTTAATGAGAATGGTGTTCCAATTAGGGAGAGCAGCATGCATAATAAGGAGCTGAGGATAAGGATAAATATGTGCATAAGCAGTAGCGTTGCATGGGAGGCTGTTATGTGTGAGTGTTAATTATGAACTAGTGCATGTATCAGTTGTTATGATGAGTCAGTATGTTTGTTGCGTGTATTGGTTACAATATGGTTTTTTAAAATATGGCTTGGAACATTCTCTGCATGATTTATATTAGTAATAAATATAGAAATCATTCCCTATTTTG
Coding sequences of Glyma.05g194400
>Glyma.05g194400.1 sequence-type=CDS polypeptide=Glyma.05g194400.1.p locus=Glyma.05g194400 ID=Glyma.05g194400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGATGAAGTGATGAGTGAAGTGGCTGCTCCACCTCGTCGTGTTCTTCTTGTATCGGCTGGTGCCAGCCACAGTGTGGCACTTCTGAGTGGAAATGTTGTTTGTTCGTGGGGACGAGGAGAGGATGGACAGTTAGGCCATGGTGACACTGATGATCGACTATTTCCTACAAAACTGAGTGCATTGGATGGCCAAGACATAATATGTGTTACTTGTGGAGCTGATCATACTATGGCACGTTCTGAGTCTGGCAGGGATGTATATAGTTGGGGATGGGGTGACTTTGGAAGGTTGGGTCATGGTGATCATAGTGACTTGCTCATTCCTCATCCCATAAAAGCATTACAGGGTCTAATGATACAACAAATTGCCTGTGGGGACAGTCATTGTTTGGCAGTTACCATGGACAGCCAGGTGCTGAGTTGGGGACGCAATCAAAATGGTGAACTTGGACTTGGAACCGCAGAGGACTCTCTTCTGCCACAAAAAATTCAAATTTTTGAGGAAATACCTATCAAAATGGTTGCTGCTGGTGCTGAACATAGTGTAGCAATCACTAAAGATGGGAATTTGTATGGATGGGGCTGGGGCCGATATGGAAACTTGGGATTGGGTGACAGAAACGATCGATTGCTGCCTGAGAAAGTGACTGTTGATGGTGACAAGATGGCCATGGTTGCTTGTGGCTGGCGGCACACAATATGTGTTTCATCTTCTGGTGGATTATACACAAATGGATGGGGCAAATACGGCCAGCTAGGACATGGGGATTTTGAGGATCATCTTGTGCCTCGCAAGGTTCAAGCCTTGAGTGATAAGTTCATTTCGCAGGTATCAGGTGGGTGGAGGCATAGTATGGCACTCACGTCTAGTGGACAACTTTTGGGCTGGGGATGGAATAAGTTCGGACAGATTGGAGTTGGTAACAATTTTGATTGTTGCTCTCCCATGCAAGTGAACTTTCCCCATGATCAGAAAGTACAAATGATCTCATGCGGGTGGAGACACACGATTGCTGTTACTGAACGTGAGAATGTATATTCTTGGGGAAGAGGAGCAAATGGACAACTTGGGAATGGAGAAACCATAGACCGCAATGTTCCAACAATTATTGAGGCCTTCAGTGTTGATGGATCTTCCGGACAGCACATAGAATCCTCAAAACCTTATCCATCATCAGGGAAATCCTCGTCCTCCATATCAGAGAGATATGCAATTGTTCCAGATGAAACTGCCTCGGGATCACAACCTACAACTTCAGAAGAGGGAAATAGGCATGATACCAGTGTCCCTGAAAGTGATGTCAATTGA

>Glyma.05g194400.2 sequence-type=CDS polypeptide=Glyma.05g194400.2.p locus=Glyma.05g194400 ID=Glyma.05g194400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCACGTTCTGAGTCTGGCAGGGATGTATATAGTTGGGGATGGGGTGACTTTGGAAGGTTGGGTCATGGTGATCATAGTGACTTGCTCATTCCTCATCCCATAAAAGCATTACAGGGTCTAATGATACAACAAATTGCCTGTGGGGACAGTCATTGTTTGGCAGTTACCATGGACAGCCAGGTGCTGAGTTGGGGACGCAATCAAAATGGTGAACTTGGACTTGGAACCGCAGAGGACTCTCTTCTGCCACAAAAAATTCAAATTTTTGAGGAAATACCTATCAAAATGGTTGCTGCTGGTGCTGAACATAGTGTAGCAATCACTAAAGATGGGAATTTGTATGGATGGGGCTGGGGCCGATATGGAAACTTGGGATTGGGTGACAGAAACGATCGATTGCTGCCTGAGAAAGTGACTGTTGATGGTGACAAGATGGCCATGGTTGCTTGTGGCTGGCGGCACACAATATGTGTTTCATCTTCTGGTGGATTATACACAAATGGATGGGGCAAATACGGCCAGCTAGGACATGGGGATTTTGAGGATCATCTTGTGCCTCGCAAGGTTCAAGCCTTGAGTGATAAGTTCATTTCGCAGGTATCAGGTGGGTGGAGGCATAGTATGGCACTCACGTCTAGTGGACAACTTTTGGGCTGGGGATGGAATAAGTTCGGACAGATTGGAGTTGGTAACAATTTTGATTGTTGCTCTCCCATGCAAGTGAACTTTCCCCATGATCAGAAAGTACAAATGATCTCATGCGGGTGGAGACACACGATTGCTGTTACTGAACGTGAGAATGTATATTCTTGGGGAAGAGGAGCAAATGGACAACTTGGGAATGGAGAAACCATAGACCGCAATGTTCCAACAATTATTGAGGCCTTCAGTGTTGATGGATCTTCCGGACAGCACATAGAATCCTCAAAACCTTATCCATCATCAGGGAAATCCTCGTCCTCCATATCAGAGAGATATGCAATTGTTCCAGATGAAACTGCCTCGGGATCACAACCTACAACTTCAGAAGAGGGAAATAGGCATGATACCAGTGTCCCTGAAAGTGATGTCAATTGA

>Glyma.05g194400.3 sequence-type=CDS polypeptide=Glyma.05g194400.3.p locus=Glyma.05g194400 ID=Glyma.05g194400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGGTGGAGTATTTGACCTTGTTTCCTTCAAGAGCAAGTTTGATTTGGGGTGACTTTGGAAGGTTGGGTCATGGTGATCATAGTGACTTGCTCATTCCTCATCCCATAAAAGCATTACAGGGTCTAATGATACAACAAATTGCCTGTGGGGACAGTCATTGTTTGGCAGTTACCATGGACAGCCAGGTGCTGAGTTGGGGACGCAATCAAAATGGTGAACTTGGACTTGGAACCGCAGAGGACTCTCTTCTGCCACAAAAAATTCAAATTTTTGAGGAAATACCTATCAAAATGGTTGCTGCTGGTGCTGAACATAGTGTAGCAATCACTAAAGATGGGAATTTGTATGGATGGGGCTGGGGCCGATATGGAAACTTGGGATTGGGTGACAGAAACGATCGATTGCTGCCTGAGAAAGTGACTGTTGATGGTGACAAGATGGCCATGGTTGCTTGTGGCTGGCGGCACACAATATGTGTTTCATCTTCTGGTGGATTATACACAAATGGATGGGGCAAATACGGCCAGCTAGGACATGGGGATTTTGAGGATCATCTTGTGCCTCGCAAGGTTCAAGCCTTGAGTGATAAGTTCATTTCGCAGGTATCAGGTGGGTGGAGGCATAGTATGGCACTCACGTCTAGTGGACAACTTTTGGGCTGGGGATGGAATAAGTTCGGACAGATTGGAGTTGGTAACAATTTTGATTGTTGCTCTCCCATGCAAGTGAACTTTCCCCATGATCAGAAAGTACAAATGATCTCATGCGGGTGGAGACACACGATTGCTGTTACTGAACGTGAGAATGTATATTCTTGGGGAAGAGGAGCAAATGGACAACTTGGGAATGGAGAAACCATAGACCGCAATGTTCCAACAATTATTGAGGCCTTCAGTGTTGATGGATCTTCCGGACAGCACATAGAATCCTCAAAACCTTATCCATCATCAGGGAAATCCTCGTCCTCCATATCAGAGAGATATGCAATTGTTCCAGATGAAACTGCCTCGGGATCACAACCTACAACTTCAGAAGAGGGAAATAGGCATGATACCAGTGTCCCTGAAAGTGATGTCAATTGA
Predicted protein sequences of Glyma.05g194400
>Glyma.05g194400.1.p sequence-type=predicted peptide transcript=Glyma.05g194400.1 locus=Glyma.05g194400 ID=Glyma.05g194400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEDEVMSEVAAPPRRVLLVSAGASHSVALLSGNVVCSWGRGEDGQLGHGDTDDRLFPTKLSALDGQDIICVTCGADHTMARSESGRDVYSWGWGDFGRLGHGDHSDLLIPHPIKALQGLMIQQIACGDSHCLAVTMDSQVLSWGRNQNGELGLGTAEDSLLPQKIQIFEEIPIKMVAAGAEHSVAITKDGNLYGWGWGRYGNLGLGDRNDRLLPEKVTVDGDKMAMVACGWRHTICVSSSGGLYTNGWGKYGQLGHGDFEDHLVPRKVQALSDKFISQVSGGWRHSMALTSSGQLLGWGWNKFGQIGVGNNFDCCSPMQVNFPHDQKVQMISCGWRHTIAVTERENVYSWGRGANGQLGNGETIDRNVPTIIEAFSVDGSSGQHIESSKPYPSSGKSSSSISERYAIVPDETASGSQPTTSEEGNRHDTSVPESDVN*

>Glyma.05g194400.2.p sequence-type=predicted peptide transcript=Glyma.05g194400.2 locus=Glyma.05g194400 ID=Glyma.05g194400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MARSESGRDVYSWGWGDFGRLGHGDHSDLLIPHPIKALQGLMIQQIACGDSHCLAVTMDSQVLSWGRNQNGELGLGTAEDSLLPQKIQIFEEIPIKMVAAGAEHSVAITKDGNLYGWGWGRYGNLGLGDRNDRLLPEKVTVDGDKMAMVACGWRHTICVSSSGGLYTNGWGKYGQLGHGDFEDHLVPRKVQALSDKFISQVSGGWRHSMALTSSGQLLGWGWNKFGQIGVGNNFDCCSPMQVNFPHDQKVQMISCGWRHTIAVTERENVYSWGRGANGQLGNGETIDRNVPTIIEAFSVDGSSGQHIESSKPYPSSGKSSSSISERYAIVPDETASGSQPTTSEEGNRHDTSVPESDVN*

>Glyma.05g194400.3.p sequence-type=predicted peptide transcript=Glyma.05g194400.3 locus=Glyma.05g194400 ID=Glyma.05g194400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKVEYLTLFPSRASLIWGDFGRLGHGDHSDLLIPHPIKALQGLMIQQIACGDSHCLAVTMDSQVLSWGRNQNGELGLGTAEDSLLPQKIQIFEEIPIKMVAAGAEHSVAITKDGNLYGWGWGRYGNLGLGDRNDRLLPEKVTVDGDKMAMVACGWRHTICVSSSGGLYTNGWGKYGQLGHGDFEDHLVPRKVQALSDKFISQVSGGWRHSMALTSSGQLLGWGWNKFGQIGVGNNFDCCSPMQVNFPHDQKVQMISCGWRHTIAVTERENVYSWGRGANGQLGNGETIDRNVPTIIEAFSVDGSSGQHIESSKPYPSSGKSSSSISERYAIVPDETASGSQPTTSEEGNRHDTSVPESDVN*






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