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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G18660.2 | AT | plant glycogenin-like starch initiation protein 1 | JGI | N/A | IEA |
| GO:0009834 | GO-bp | plant-type secondary cell wall biogenesis | EnsemblGenomes | N/A | IEA |
| GO:0045492 | GO-bp | xylan biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0005794 | GO-cc | Golgi apparatus | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0015020 | GO-mf | glucuronosyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016757 | GO-mf | transferase activity, transferring glycosyl groups | EnsemblGenomes | N/A | IEA |
| GO:0016757 | GO-mf | transferase activity, transferring glycosyl groups | JGI | N/A | IEA |
| KOG1950 | KOG | Glycosyl transferase, family 8 - glycogenin | JGI | N/A | IEA |
| PTHR11183 | Panther | GLYCOGENIN | JGI | N/A | IEA |
| PTHR11183:SF7 | Panther | JGI | N/A | IEA | |
| PF01501 | PFAM | Glycosyl transferase family 8 | JGI | N/A | IEA |
| GN7V-64606 | SoyCyc9-rxn | glucuronosyltransferase | Plant Metabolic Network | ISS |
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Glyma.05g190200 not represented in the dataset |
Glyma.05g190200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.08g147800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma05g32370 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.05g190200.1 sequence-type=CDS polypeptide=Glyma.05g190200.1.p locus=Glyma.05g190200 ID=Glyma.05g190200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGATACTTCCCCACGTGCCGGTGAAGGTAGACACCGTTTTCCAGCATCCATTGTAGATTTATACAGACGGAGATTACCAAAAAGGAATGCAAAAGATGTTGAAAAGCCTATCCAGTTATCCATCCAAGATAGAAGCTCAAGATGCAACTTTTCTTTCTTAAAACCTTTTGTCTTATTGATGACCATTTGCGGCACTTATGTAACGCTTCTGTATTCTCCAAAGGTTTACAACAACAACCATTTATCAAGCTCTGGCTCCGGGCCAAATTTTGTGAACAGGTGGATATGGGATGGTTTAGATCCTCGGTATGTATCGAATGTAGATATTAACTGGGGTGATATATTGCAAATTACTGCGAAACTGACAGGGAAAAAAGAATTTCAAGGGGTTGGACTTGTAAACTTCAACAATACTGAACTAGACCATTGGGAACAGCTTATTCCTAATGCCACACATGTTGTTCTGGAGCTAGAGTATGCTGCAAAAAATGTGACATGGGAATCCCTATACCCAGAATGGATTGATGAGGAAGAAGAAACCGAAGTCCCGGTTTGTCATTCTCTTCCAAGTCTTAGATCTCCTGGAATAAGGCTCAATCTCATAGCTGTGAAGCTTCCTCATGTCAATGGAGGGAATTGGTCTAGAGATGTTGCTCGGTTGCACTTGCAGTTAGCAGTAGCTAGGCTTGCAACCTCTTTCAAAGGCAATTATCCCGTGTACGTGCTTTTTGTTACCAACTTCTTTCCAATACCTAATTTGTTTACCTGCAAAGAACTTGTGGGACATGAAGGGGATGTGTGGTTATACAAACCAAACTTGAAAGTTTTGGGAGAAAAACTCCACCTTCCAGTTGGATCTTGTGAACTTGCACTTCCTTTGAGGGGCAAAGAGCTGAGTTATGTGGGAAATGTTCGTAGAGAAGCATATGCAACAATTCTCCATTCAGCTCACGTTTATGTTTGTGGAGCTATTGCTGCTGCACAAAGCATCCGCATGTCCGGTTCAACTCGAGACCTAGTAATACTTGTTGATGAGACAATAAGTGAGTACCACAGAAGTGGTTTAGAAGCAGCAGGGTGGAAAATCAGGACAATACAAAGAATCAGAAATCCAAAGGCTGAAAAAGATGCTTACAATGAATGGAACTACAGCAAGTTCCGTTTGTGGCAGCTTACAGAATATGACAAGATAATATTCATTGATGCAGATTTGCTCATCCTAAGAAATATAGATTTCCTATTTGGAATGCCAGAAATCACTGCAACTGGAAATAATGGCACTCTTTTCAACTCAGGTGTCATGGTGGTTGAGCCATCAAATTGCACATTCAAGCTCCTCATGGATCATATTAATGAGTTTGAGTCCTACAATGGAGGGGACCAGGGATACTTAAATGAAATATTCACATGGTGGCACAGGATACCAAGACACATGAACTTTCTGAAGCATTTTTGGGTTGGTGATGAGGAAGAGAAGAAACAAATGAAGACTTTGTTATTTGGTGCAGACCCTCCAATTCTCTATGTGCTTCACTATCTAGGAATGAAGCCATGGTTGTGCTTCCGGGACTATGATTGTAACTGGAACAGTGATATCTTTCACGAGTTTGCAAGTGATGTTGCTCATGGAAGGTGGTGGAAGGTGCATGATGCAATGCCTGAACTCTTGCAACAGTTTTGCATGCTGAAGTCAAAGCAGAAGGCACAGTTGGAATGGGATCGTAGGCAAGCTGAAATAGCTAACTACACAAATGGGCATTGGCAAATTAAAGTTAAAGATAAGAGGTTGAAGAAATGCATTGATAACTTGTGCTCATGGGAAAACATGTTGAAGCATTGGGGAGAGACCAATTGGACTGATGATGAGTCTTATACTCCAACTCCACCAGCCATTTCCACATCATCCCTTTCTGATTTGTGA
>Glyma.05g190200.1.p sequence-type=predicted peptide transcript=Glyma.05g190200.1 locus=Glyma.05g190200 ID=Glyma.05g190200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MDTSPRAGEGRHRFPASIVDLYRRRLPKRNAKDVEKPIQLSIQDRSSRCNFSFLKPFVLLMTICGTYVTLLYSPKVYNNNHLSSSGSGPNFVNRWIWDGLDPRYVSNVDINWGDILQITAKLTGKKEFQGVGLVNFNNTELDHWEQLIPNATHVVLELEYAAKNVTWESLYPEWIDEEEETEVPVCHSLPSLRSPGIRLNLIAVKLPHVNGGNWSRDVARLHLQLAVARLATSFKGNYPVYVLFVTNFFPIPNLFTCKELVGHEGDVWLYKPNLKVLGEKLHLPVGSCELALPLRGKELSYVGNVRREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISEYHRSGLEAAGWKIRTIQRIRNPKAEKDAYNEWNYSKFRLWQLTEYDKIIFIDADLLILRNIDFLFGMPEITATGNNGTLFNSGVMVVEPSNCTFKLLMDHINEFESYNGGDQGYLNEIFTWWHRIPRHMNFLKHFWVGDEEEKKQMKTLLFGADPPILYVLHYLGMKPWLCFRDYDCNWNSDIFHEFASDVAHGRWWKVHDAMPELLQQFCMLKSKQKAQLEWDRRQAEIANYTNGHWQIKVKDKRLKKCIDNLCSWENMLKHWGETNWTDDESYTPTPPAISTSSLSDL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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