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Report for Sequence Feature Glyma.05g189900

Feature Type:gene_model
Chromosome:Gm05
Start:37566501
stop:37569781
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g189900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G18680.1AT Amino acid kinase family protein JGI N/AIEA
GO:0006221GO-bp pyrimidine nucleotide biosynthetic process EnsemblGenomesN/AIEA
GO:0046939GO-bp nucleotide phosphorylation EnsemblGenomesN/AIEA
GO:0046940GO-bp nucleoside monophosphate phosphorylation EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0033862GO-mf UMP kinase activity EnsemblGenomesN/AIEA
PTHR26059Panther JGI N/AIEA
PTHR26059:SF1Panther JGI N/AIEA
PF00696PFAM Amino acid kinase family JGI N/AIEA
PWY-5687SoyCyc9 pyrimidine ribonucleotides interconversion Plant Metabolic Network ISS
PWY-7176SoyCyc9 UTP and CTP de novo biosynthesis Plant Metabolic Network ISS
PWY-7196SoyCyc9 superpathway of pyrimidine ribonucleosides salvage Plant Metabolic Network ISS
PWY-7208SoyCyc9 superpathway of pyrimidine nucleobases salvage Plant Metabolic Network ISS
PWY-7211SoyCyc9 superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis Plant Metabolic Network ISS
PWY0-162SoyCyc9 superpathway of pyrimidine ribonucleotides de novo biosynthesis Plant Metabolic Network ISS
GN7V-40717SoyCyc9-rxn UMP kinase Plant Metabolic Network ISS

Expression Patterns of Glyma.05g189900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g189900
ParalogEvidenceComments
Glyma.08g147500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g189900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g32340 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05g189900
>Glyma.05g189900.1 sequence-type=CDS polypeptide=Glyma.05g189900.1.p locus=Glyma.05g189900 ID=Glyma.05g189900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCACTCTACACCCATCTCATCTCTTTCTCTTCTTCTTCTTTTCTTCATTCACCTTCGCCTCTATGTCTTCCAAAGCCTCTCTTCCCTTCTTTTACTTTGACAGTGGGCAATTCAACCTCCCACACCACCAGTCTCGCCGTTCGCTCCTCTTATTCCGAAATGGGCTCTTCCCCTGAGCCCATCAATTTCAGGAAGCCAGGGATTCCGTCCATGTCTCACTTGAGACTCTCAATGAACGAAAGTAGCAAGCCATCATTTAAATGGCGAAGGGTTTTGCTCAAAGTCAGCGGAGAAGCACTTGCTGGAGACCACTCTCAGAACATTGACCCTAAGATAACCATGGCCATTGCAAGGGAGGTGGCAGCAGTGACTCGCCTTGGCATTGAGGTTGCACTGGTAGTTGGTGGGGGTAACATCTTCCGTGGATCCTCCTGGGCTGGAAGTAGTGGACTAGACCGCTCATCTGCGGATTATATTGGGATGTTGGCCACTGTTATGAATGCTATATTTCTTCAAGCAACAATGGAAAGTATTGGCATTCCTACTCGGGTGCAGACTGCATTTCGTATGTCTGAGGTTGCAGAACCATATATTCGCAGAAGGGCTGTGAGGCATTTGGAAAAAGGAAGGGTTGTCATTTTTGCTGCTGGAACTGGTAATCCATTCTTTACCACAGACACTGCTGCAGCACTCCGATGTGCAGAAATTAATGCCGAGGTTGTACTCAAAGCAACAAACGTTGATGGAGTTTTTGATGAAGACCCAAAGCGTAATCCACAAGCACGTCTTCACGAGACACTAACCTATCAGGAGGTAACTTCCAAAGATCTGTCAGTGATGGACATGACTGCCATAACTTTATGCCAAGAAAATAATATTCCAGTTGTTGTCTTCAATCTTAACAAACCTGGTAACATTGAGAAAGCTATTAAAGGAGAAAGAGTTGGCACTTTGATTGGAGCAACCTGGAATTCTACCGTATCAAGAACATGA
Predicted protein sequences of Glyma.05g189900
>Glyma.05g189900.1.p sequence-type=predicted peptide transcript=Glyma.05g189900.1 locus=Glyma.05g189900 ID=Glyma.05g189900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALYTHLISFSSSSFLHSPSPLCLPKPLFPSFTLTVGNSTSHTTSLAVRSSYSEMGSSPEPINFRKPGIPSMSHLRLSMNESSKPSFKWRRVLLKVSGEALAGDHSQNIDPKITMAIAREVAAVTRLGIEVALVVGGGNIFRGSSWAGSSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVFDEDPKRNPQARLHETLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNKPGNIEKAIKGERVGTLIGATWNSTVSRT*






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