Glyma.05g189800

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Report for Sequence Feature Glyma.05g189800

Feature Type:	gene_model
Chromosome:	Gm05
Start:	37560783
stop:	37565493
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.05g189800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G24320.1	AT	Transducin/WD40 repeat-like superfamily protein	JGI	N/A	IEA
GO:0005515	GO-mf	protein binding	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	JGI	N/A	IEA
KOG0283	KOG	WD40 repeat-containing protein	JGI	N/A	IEA
PTHR14221	Panther	WD REPEAT DOMAIN 44	JGI	N/A	IEA
PF00400	PFAM	WD domain, G-beta repeat	JGI	N/A	IEA

Expression Patterns of Glyma.05g189800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g189800 not represented in the dataset	Glyma.05g189800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.05g189800

Paralog	Evidence	Comments
Glyma.08g147400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g189800 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma05g32331	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.05g189800

Limit To All Plant Sequences

>Glyma.05g189800.2 sequence-type=transcript locus=Glyma.05g189800 ID=Glyma.05g189800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTCATTGGTGGTTAGTTTGTTTCTTGTACTTAGGCTATGATTTTAGCCTGTGACATTTAATATTCTACTGTGATTTGCATAATTGGGGGGAGAAATTTGGTCCCTTGATTGGGAATTCCCTATTTTAAGGTGTTGAGAAGTAGTGTATTGATAGTTGGGAGAAGGGTTAGGTCTTGAAGGTGGGATTTTCATGTGGAAGGTGGTTTGTTTCAAATCGAAGTGTGAGATATGCTGAGCTCTGATGATGGAGACATGGATGTGTTCTTTGACTCAGTGGATAGTTTGTCAACTCAAGATTCTGTTTTAGCCAAAGAAGAGTTTGGTTCTGGAAGGTGTGGTTATGACGAAATTTGGGTGAAGGAGCCTGTTAGTGTGAAGGAGAGGAGGGAACGTTTTCTGCAGGGTTTGGGCTTAGCTGATTCTTCTTCCAAGGTTTGTTCACAAGAGAAAATGAACTTAGATGACTCATCCATCAGCTTGGGATTGGAGAGGATCAGGGAGTGCAGTGGGGCAATCTCAAATGCTTGCATTTTGCATACTGATCAAGTAGTATCTGAGAAGTTGATTCTCTCTGGAGGCAAAGCAGCTTCTAAAGAAAAAATCTCTTTGGATGAATTCAAAGGGTGTCCCCAAGATGAAGCAGAAGCAAACATTCAAGGAAAAGAGCATGAGTTCTCTTCTACAGCTGAGGAGCACAGACCCAGAGAAGCTGTTTCACAAGAAGAATTTCAGGATTTTGATATGAGTAAAAGAAAGAGGAAAAACTGGTGGAAGCGCTTTGTGAACATCAGGAAAAGTGGTGAAGGAAATGTAAGGTCCAAATTGAATGCAGGGACAAATAAAACTCGAAGAATAAAGGTGAGGCAGAATAAAAAGAGGTGGCTGGAGTTCAGTGGCCTATACCTTGGACAAGAGGTTAGAGCACACAAAGGCCTAGTCTGGACCATGAAATTTAGTCCATGTGGTCAGTATTTAGCGAGTGGAGGTGAAGATGGTGTTGTTCGCATATGGTGTGTTACATCACTGGATAAATCCAGTATTTGTTTCACCCCAGAAGACAGTACTTCTAAAAGCAAAGTGGAATGTGACAACTCTTCTCCTCGGAAGAAACACTCAAGCCAACCCTTCATTTTCCTTCCAAATAGTGTTTTTCAAATTGAGGAATCACCACTGCAAGAATTCTTTGGTCATTCCAATGATGTCTTGGATTTGGCTTGGTCTAATTCAGATATTCTCCTTTCATCTTCTATGGACAAGACTGTTCGCTTGTGGCAAATTGGTTGTAATCAATGTCTAAATGTTTTCCATCACAATGACTATGTGACATGCATTCAATTCAACCCTGTTGATGAAAACTACTTCATTAGTGGGTCCATTGATGGTAAGGTTCGAATATGGGGGATACGTGAAGAGCGAGTTATTGACTGGGCAGATATACGAGATGCCATAAGTGCTATAAGTTACCAGCAAGATGGGAAAGGATTTGTAGTTGGTTCTGTTACAGGCACTTGTTGTTTTTATGTTGCTTCAGGAACATATTTCCAGCTTGAGGCTCAGATAGATGTCCATGGAAAGAAGAAAGCGTCCGGCAACAAGATTACTGGCATTCAGTTCTCCCAAAAAAACAGTCAGAGAATAATGATCACATCAGAAGATTCTAAAATTTGTGTATTTGATGGCATTGAGCTTGTTCAGAAATACAGAGGTCTTCCTAAGTCAGGATGTCAGATGTCTAGTTCATTCACATCAAGTGGAAAACATATAATCTCAGTTGGAGAGGACTCCCATGTATATATTTGGAACTTTGATGACATGGGAAATGCTTCTTCAAAACAGACGAAATCCGAACGCTCCTAAATGCCAACCCAACAGCTAGAGGTTGCCTCTGAGGCTAGAGATCACAAACGTTTTTCTCTTGGTAATTGGTTCGCCATTGATGGCACGTGTCGAGGTTCTATGACTTGGCCCGAGGAGAAACTTCCTAGCTGGGATTTACCTATAACAGAAGATGAATATGGTCACCAGCAGTTATGTTACAAAGATAATTGCCATGGCAGAAATGTATCAGAAACATGGGGACTATCAATTGTGGCAGCTGGTTGTGATGGAACTATCAAGACATTCCACAACTTTGGATTGCCCGTTAGGCTTTAATTAAGACAATGCCATGGTTATGTTAGCATTGAATAACCATGTAAATGTCATGGTTATGTTGGTGTTGAATAACCATGTAACTTACTCCTATTTAAGGATCGATGATTCAGCCACAATGCCTTCCATATATGAGAACTTTGGCCTCTTATCCATTAAGGCTTTGCCTGGTAAAGGTGGAAATTTACAACGGTGTGTTATGGCCTTAGAATCCAATGTAAGTGGCTCAAAATGTGGGAAGACGGAATTTGAAGCCTTTGCCTCTGCTTATATGATGATCATTGCTAAATCCATGTTGAGTCTCAAGGCTCTCGAAATGTTCTAGAAATTTGTACACTTAACACTTGTGATATGCCTCTAGTTTAATGTGGTTCTAGTGGTGAAGTCAGGCCACAGACCACACGAGAATCTTAATCTCTTTTTCTCATTCTCACATTGTGATTAGATGATTTATACAGCTGATACAAATTTAAAAATGCAATTGAAATTTTATTCA

Coding sequences of Glyma.05g189800

Limit To All Plant Sequences

>Glyma.05g189800.1 sequence-type=CDS polypeptide=Glyma.05g189800.1.p locus=Glyma.05g189800 ID=Glyma.05g189800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTGAGCTCTGATGATGGAGACATGGATGTGTTCTTTGACTCAGTGGATAGTTTGTCAACTCAAGATTCTGTTTTAGCCAAAGAAGAGTTTGGTTCTGGAAGGTGTGGTTATGACGAAATTTGGGTGAAGGAGCCTGTTAGTGTGAAGGAGAGGAGGGAACGTTTTCTGCAGGGTTTGGGCTTAGCTGATTCTTCTTCCAAGGTTTGTTCACAAGAGAAAATGAACTTAGATGACTCATCCATCAGCTTGGGATTGGAGAGGATCAGGGAGTGCAGTGGGGCAATCTCAAATGCTTGCATTTTGCATACTGATCAAGTAGTATCTGAGAAGTTGATTCTCTCTGGAGGCAAAGCAGCTTCTAAAGAAAAAATCTCTTTGGATGAATTCAAAGGGTGTCCCCAAGATGAAGCAGAAGCAAACATTCAAGGAAAAGAGCATGAGTTCTCTTCTACAGCTGAGGAGCACAGACCCAGAGAAGCTGTTTCACAAGAAGAATTTCAGGATTTTGATATGAGTAAAAGAAAGAGGAAAAACTGGTGGAAGCGCTTTGTGAACATCAGGAAAAGTGGTGAAGGAAATGTAAGGTCCAAATTGAATGCAGGGACAAATAAAACTCGAAGAATAAAGGTGAGGCAGAATAAAAAGAGGTGGCTGGAGTTCAGTGGCCTATACCTTGGACAAGAGGTTAGAGCACACAAAGGCCTAGTCTGGACCATGAAATTTAGTCCATGTGGTCAGTATTTAGCGAGTGGAGGTGAAGATGGTGTTGTTCGCATATGGTGTGTTACATCACTGGATAAATCCAGTATTTGTTTCACCCCAGAAGACAGTACTTCTAAAAGCAAAGTGGAATGTGACAACTCTTCTCCTCGGAAGAAACACTCAAGCCAACCCTTCATTTTCCTTCCAAATAGTGTTTTTCAAATTGAGGAATCACCACTGCAAGAATTCTTTGGTCATTCCAATGATGTCTTGGATTTGGCTTGGTCTAATTCAGATATTCTCCTTTCATCTTCTATGGACAAGACTGTTCGCTTGTGGCAAATTGGTTGTAATCAATGTCTAAATGTTTTCCATCACAATGACTATGTGACATGCATTCAATTCAACCCTGTTGATGAAAACTACTTCATTAGTGGGTCCATTGATGGTAAGGTTCGAATATGGGGGATACGTGAAGAGCGAGTTATTGACTGGGCAGATATACGAGATGCCATAAGTGCTATAAGTTACCAGCAAGATGGGAAAGGATTTGTAGTTGGTTCTGTTACAGGCACTTGTTGTTTTTATGTTGCTTCAGGAACATATTTCCAGCTTGAGGCTCAGATAGATGTCCATGGAAAGAAGAAAGCGTCCGGCAACAAGATTACTGGCATTCAGTTCTCCCAAAAAAACAGTCAGAGAATAATGATCACATCAGAAGATTCTAAAATTTGTGTATTTGATGGCATTGAGCTTGTTCAGAAATACAGAGGTCTTCCTAAGTCAGGATGTCAGATGTCTAGTTCATTCACATCAAGTGGAAAACATATAATCTCAGTTGGAGAGGACTCCCATGTATATATTTGGAACTTTGATGACATGGGAAATGCTTCTTCAAAACAGACGAAATCCGAACGCTCCTGTGAGTACTTTTTCTCTAAAGGTGTTACTGTTGCAATTCCTAGGTCAGGCATGAAAGCAGATAAAAGGGACTCTAGTGGTAATTATTCCCACCATTCTTCAGAAATGCCAACCCAACAGCTAGAGGTTGCCTCTGAGGCTAGAGATCACAAACGTTTTTCTCTTGGTAATTGGTTCGCCATTGATGGCACGTGTCGAGGTTCTATGACTTGGCCCGAGGAGAAACTTCCTAGCTGGGATTTACCTATAACAGAAGATGAATATGGTCACCAGCAGTTATGTTACAAAGATAATTGCCATGGCAGAAATGTATCAGAAACATGGGGACTATCAATTGTGGCAGCTGGTTGTGATGGAACTATCAAGACATTCCACAACTTTGGATTGCCCGTTAGGCTTTAA

>Glyma.05g189800.2 sequence-type=CDS polypeptide=Glyma.05g189800.2.p locus=Glyma.05g189800 ID=Glyma.05g189800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTGAGCTCTGATGATGGAGACATGGATGTGTTCTTTGACTCAGTGGATAGTTTGTCAACTCAAGATTCTGTTTTAGCCAAAGAAGAGTTTGGTTCTGGAAGGTGTGGTTATGACGAAATTTGGGTGAAGGAGCCTGTTAGTGTGAAGGAGAGGAGGGAACGTTTTCTGCAGGGTTTGGGCTTAGCTGATTCTTCTTCCAAGGTTTGTTCACAAGAGAAAATGAACTTAGATGACTCATCCATCAGCTTGGGATTGGAGAGGATCAGGGAGTGCAGTGGGGCAATCTCAAATGCTTGCATTTTGCATACTGATCAAGTAGTATCTGAGAAGTTGATTCTCTCTGGAGGCAAAGCAGCTTCTAAAGAAAAAATCTCTTTGGATGAATTCAAAGGGTGTCCCCAAGATGAAGCAGAAGCAAACATTCAAGGAAAAGAGCATGAGTTCTCTTCTACAGCTGAGGAGCACAGACCCAGAGAAGCTGTTTCACAAGAAGAATTTCAGGATTTTGATATGAGTAAAAGAAAGAGGAAAAACTGGTGGAAGCGCTTTGTGAACATCAGGAAAAGTGGTGAAGGAAATGTAAGGTCCAAATTGAATGCAGGGACAAATAAAACTCGAAGAATAAAGGTGAGGCAGAATAAAAAGAGGTGGCTGGAGTTCAGTGGCCTATACCTTGGACAAGAGGTTAGAGCACACAAAGGCCTAGTCTGGACCATGAAATTTAGTCCATGTGGTCAGTATTTAGCGAGTGGAGGTGAAGATGGTGTTGTTCGCATATGGTGTGTTACATCACTGGATAAATCCAGTATTTGTTTCACCCCAGAAGACAGTACTTCTAAAAGCAAAGTGGAATGTGACAACTCTTCTCCTCGGAAGAAACACTCAAGCCAACCCTTCATTTTCCTTCCAAATAGTGTTTTTCAAATTGAGGAATCACCACTGCAAGAATTCTTTGGTCATTCCAATGATGTCTTGGATTTGGCTTGGTCTAATTCAGATATTCTCCTTTCATCTTCTATGGACAAGACTGTTCGCTTGTGGCAAATTGGTTGTAATCAATGTCTAAATGTTTTCCATCACAATGACTATGTGACATGCATTCAATTCAACCCTGTTGATGAAAACTACTTCATTAGTGGGTCCATTGATGGTAAGGTTCGAATATGGGGGATACGTGAAGAGCGAGTTATTGACTGGGCAGATATACGAGATGCCATAAGTGCTATAAGTTACCAGCAAGATGGGAAAGGATTTGTAGTTGGTTCTGTTACAGGCACTTGTTGTTTTTATGTTGCTTCAGGAACATATTTCCAGCTTGAGGCTCAGATAGATGTCCATGGAAAGAAGAAAGCGTCCGGCAACAAGATTACTGGCATTCAGTTCTCCCAAAAAAACAGTCAGAGAATAATGATCACATCAGAAGATTCTAAAATTTGTGTATTTGATGGCATTGAGCTTGTTCAGAAATACAGAGGTCTTCCTAAGTCAGGATGTCAGATGTCTAGTTCATTCACATCAAGTGGAAAACATATAATCTCAGTTGGAGAGGACTCCCATGTATATATTTGGAACTTTGATGACATGGGAAATGCTTCTTCAAAACAGACGAAATCCGAACGCTCCTAA

Predicted protein sequences of Glyma.05g189800

Limit To All Plant Sequences

>Glyma.05g189800.1.p sequence-type=predicted peptide transcript=Glyma.05g189800.1 locus=Glyma.05g189800 ID=Glyma.05g189800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLSSDDGDMDVFFDSVDSLSTQDSVLAKEEFGSGRCGYDEIWVKEPVSVKERRERFLQGLGLADSSSKVCSQEKMNLDDSSISLGLERIRECSGAISNACILHTDQVVSEKLILSGGKAASKEKISLDEFKGCPQDEAEANIQGKEHEFSSTAEEHRPREAVSQEEFQDFDMSKRKRKNWWKRFVNIRKSGEGNVRSKLNAGTNKTRRIKVRQNKKRWLEFSGLYLGQEVRAHKGLVWTMKFSPCGQYLASGGEDGVVRIWCVTSLDKSSICFTPEDSTSKSKVECDNSSPRKKHSSQPFIFLPNSVFQIEESPLQEFFGHSNDVLDLAWSNSDILLSSSMDKTVRLWQIGCNQCLNVFHHNDYVTCIQFNPVDENYFISGSIDGKVRIWGIREERVIDWADIRDAISAISYQQDGKGFVVGSVTGTCCFYVASGTYFQLEAQIDVHGKKKASGNKITGIQFSQKNSQRIMITSEDSKICVFDGIELVQKYRGLPKSGCQMSSSFTSSGKHIISVGEDSHVYIWNFDDMGNASSKQTKSERSCEYFFSKGVTVAIPRSGMKADKRDSSGNYSHHSSEMPTQQLEVASEARDHKRFSLGNWFAIDGTCRGSMTWPEEKLPSWDLPITEDEYGHQQLCYKDNCHGRNVSETWGLSIVAAGCDGTIKTFHNFGLPVRL*

>Glyma.05g189800.2.p sequence-type=predicted peptide transcript=Glyma.05g189800.2 locus=Glyma.05g189800 ID=Glyma.05g189800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLSSDDGDMDVFFDSVDSLSTQDSVLAKEEFGSGRCGYDEIWVKEPVSVKERRERFLQGLGLADSSSKVCSQEKMNLDDSSISLGLERIRECSGAISNACILHTDQVVSEKLILSGGKAASKEKISLDEFKGCPQDEAEANIQGKEHEFSSTAEEHRPREAVSQEEFQDFDMSKRKRKNWWKRFVNIRKSGEGNVRSKLNAGTNKTRRIKVRQNKKRWLEFSGLYLGQEVRAHKGLVWTMKFSPCGQYLASGGEDGVVRIWCVTSLDKSSICFTPEDSTSKSKVECDNSSPRKKHSSQPFIFLPNSVFQIEESPLQEFFGHSNDVLDLAWSNSDILLSSSMDKTVRLWQIGCNQCLNVFHHNDYVTCIQFNPVDENYFISGSIDGKVRIWGIREERVIDWADIRDAISAISYQQDGKGFVVGSVTGTCCFYVASGTYFQLEAQIDVHGKKKASGNKITGIQFSQKNSQRIMITSEDSKICVFDGIELVQKYRGLPKSGCQMSSSFTSSGKHIISVGEDSHVYIWNFDDMGNASSKQTKSERS*

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