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Report for Sequence Feature Glyma.05g188800

Feature Type:gene_model
Chromosome:Gm05
Start:37453030
stop:37456246
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g188800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G09810.1AT actin 7 JGI N/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
KOG0676 KOG Actin and related proteins JGI N/AIEA
PTHR11937Panther ACTIN JGI N/AIEA
PTHR11937:SF77Panther JGI N/AIEA
PF00022PFAM Actin JGI N/AIEA

Expression Patterns of Glyma.05g188800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g188800
ParalogEvidenceComments
Glyma.08g146500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g188800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g32220 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.05g188800
>Glyma.05g188800.2 sequence-type=transcript locus=Glyma.05g188800 ID=Glyma.05g188800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GACCCCTCAGTTTACAAAGTTTGATGAGCCTTTGTACACGGTTAGAGAAAACCGTTGTTACGCTCTCACGAACACACTCATACCCTCTGCTGCTCTCTCTCTGTATATATACCCCTTCACTTCTGTTCCAGCACCTTCCATTACTCCATTTCCATTCTCAACTGCGCGGTGAGTGAGTGAGAGACGGAAAGTGCAAAGCCACCGtcttctcttctcagagcttggctttgcttatcgattctctctcctctcatctttctcattcAAGGTTTGTAAAAGATGGCCGATGCTGAGGATATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTCAAGGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATGCCTATGTTGGTGATGAAGCCCAATCAAAAAGAGGTATTCTTACTCTCAAGTATCCCATTGAGCATGGTATAGTCAGCAACTGGGATGACATGGAAAAGATCTGGCATCACACATTTTATAATGAACTTCGTGTTGCTCCTGAGGAGCACCCAGTGCTTCTCACTGAGGCTCCTCTCAACCCAAAGGCCAACAGAGAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGGTATTGTGTTGGACTCTGGTGATGGTGTGAGTCACACTGTACCAATCTATGAGGGGTATGCACTCCCCCATGCCATCCTTCGTTTGGATCTCGCAGGTCGTGATCTAACTGATCATTTGATGAAGATCCTCACTGAGAGAGGGTACATGTTCACCACCTCTGCTGAGCGAGAAATTGTCCGTGACATGAAGGAAAAACTTGCATATGTTGCCCTAGATTATGAGCAAGAACTCGAGACTGCAAAAAGCAGTTCATCAGTTGAGAAAAGCTATGAGCTTCCTGATGGACAGGTTATCACAATTGGGGCAGAGAGATTCCGTTGCCCAGAAGTTCTTTTCCAGCCATCTATGATTGGAATGGAAGCTGCTGGAATTCATGAGACCACCTACAATTCTATCATGAAGTGTGATGTGGATATCAGAAAGGATCTATATGGCAACATTGTTCTTAGTGGTGGCTCAACTATGTTTCCTGGTATTGCAGACCGGATGAGCAAGGAGATCACTGCTCTTGCTCCTAGCAGCATGAAGATTAAGGTTGTAGCTCCACCAGAAAGAAAATATAGTGTCTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAACAGATGTGGATTTCTAAAGGTGAATATGATGAGTCTGGCCCATCCATTGTCCACAGGAAGTGCTTCTAACTTCTAAGTACAAAATATGCTTCAATGGTGAAATATTTTTCGCACCAGTTGTTTTTATGGGTCTGTGTCATGTCATGTTAACGATATTGCCATGGATAAGAGGTGAGGAAGTATCATTAAAGGAGGGTCTATTCTTTAGCTTGATGCATCATATTTTGTGTGGGGGGCAGACAGTTAGAGAGAGGCATTTCTTGCGTTTGGCCATCCGTGGTTCATCTATATCTTCTTAGTAGGTTGTGTTGTAGCAAGGGAGTGATTGTGATGATCTCTTTTTCCCCCATTTTCTTTTTGTATTTTTAAAGTTTACATTTGAAGGATTTTTCCCCTTGGAACATTGAATCATTGATGTTAATAGTCATATGTATCGAGAAATCTCTATATTATTGTTATTTCCCGTTCTTGCTCGTAAATTCATACTGCAGTTTTTATGTATGTTGAATTATGTCCTAGAGACGGCATTAAGTCCATTTGATGAATGCAT
Coding sequences of Glyma.05g188800
>Glyma.05g188800.1 sequence-type=CDS polypeptide=Glyma.05g188800.1.p locus=Glyma.05g188800 ID=Glyma.05g188800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCGATGCTGAGGATATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTCAAGGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATGCCTATGTTGGTGATGAAGCCCAATCAAAAAGAGGTATTCTTACTCTCAAGTATCCCATTGAGCATGGTATAGTCAGCAACTGGGATGACATGGAAAAGATCTGGCATCACACATTTTATAATGAACTTCGTGTTGCTCCTGAGGAGCACCCAGTGCTTCTCACTGAGGCTCCTCTCAACCCAAAGGCCAACAGAGAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGGTATTGTGTTGGACTCTGGTGATGGTGTGAGTCACACTGTACCAATCTATGAGGGGTATGCACTCCCCCATGCCATCCTTCGTTTGGATCTCGCAGGTCGTGATCTAACTGATCATTTGATGAAGATCCTCACTGAGAGAGGGTACATGTTCACCACCTCTGCTGAGCGAGAAATTGTCCGTGACATGAAGGAAAAACTTGCATATGTTGCCCTAGATTATGAGCAAGAACTCGAGACTGCAAAAAGCAGTTCATCAGTTGAGAAAAGCTATGAGCTTCCTGATGGACAGGTTATCACAATTGGGGCAGAGAGATTCCGTTGCCCAGAAGTTCTTTTCCAGCCATCTATGATTGGAATGGAAGCTGCTGGAATTCATGAGACCACCTACAATTCTATCATGAAGTGTGATGTGGATATCAGAAAGGATCTATATGGCAACATTGTTCTTAGTGGTGGCTCAACTATGTTTCCTGGTATTGCAGACCGGATGAGCAAGGAGATCACTGCTCTTGCTCCTAGCAGCATGAAGATTAAGGTTGTAGCTCCACCAGAAAGAAAATATAGTGTCTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAACAGATGTGGATTTCTAAAGGTGAATATGATGAGTCTGGCCCATCCATTGTCCACAGGAAGTGCTTCTAA

>Glyma.05g188800.2 sequence-type=CDS polypeptide=Glyma.05g188800.2.p locus=Glyma.05g188800 ID=Glyma.05g188800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCGATGCTGAGGATATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTCAAGGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATGCCTATGTTGGTGATGAAGCCCAATCAAAAAGAGGTATTCTTACTCTCAAGTATCCCATTGAGCATGGTATAGTCAGCAACTGGGATGACATGGAAAAGATCTGGCATCACACATTTTATAATGAACTTCGTGTTGCTCCTGAGGAGCACCCAGTGCTTCTCACTGAGGCTCCTCTCAACCCAAAGGCCAACAGAGAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGGTATTGTGTTGGACTCTGGTGATGGTGTGAGTCACACTGTACCAATCTATGAGGGGTATGCACTCCCCCATGCCATCCTTCGTTTGGATCTCGCAGGTCGTGATCTAACTGATCATTTGATGAAGATCCTCACTGAGAGAGGGTACATGTTCACCACCTCTGCTGAGCGAGAAATTGTCCGTGACATGAAGGAAAAACTTGCATATGTTGCCCTAGATTATGAGCAAGAACTCGAGACTGCAAAAAGCAGTTCATCAGTTGAGAAAAGCTATGAGCTTCCTGATGGACAGGTTATCACAATTGGGGCAGAGAGATTCCGTTGCCCAGAAGTTCTTTTCCAGCCATCTATGATTGGAATGGAAGCTGCTGGAATTCATGAGACCACCTACAATTCTATCATGAAGTGTGATGTGGATATCAGAAAGGATCTATATGGCAACATTGTTCTTAGTGGTGGCTCAACTATGTTTCCTGGTATTGCAGACCGGATGAGCAAGGAGATCACTGCTCTTGCTCCTAGCAGCATGAAGATTAAGGTTGTAGCTCCACCAGAAAGAAAATATAGTGTCTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAACAGATGTGGATTTCTAAAGGTGAATATGATGAGTCTGGCCCATCCATTGTCCACAGGAAGTGCTTCTAA
Predicted protein sequences of Glyma.05g188800
>Glyma.05g188800.1.p sequence-type=predicted peptide transcript=Glyma.05g188800.1 locus=Glyma.05g188800 ID=Glyma.05g188800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYMFTTSAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF*

>Glyma.05g188800.2.p sequence-type=predicted peptide transcript=Glyma.05g188800.2 locus=Glyma.05g188800 ID=Glyma.05g188800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYMFTTSAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF*






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