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Report for Sequence Feature Glyma.05g187700

Feature Type:gene_model
Chromosome:Gm05
Start:37387615
stop:37391958
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g187700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G39330.1AT cinnamyl alcohol dehydrogenase 9 JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
GO:0016616GO-mf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0048037GO-mf cofactor binding JGI N/AIEA
GO:0051287GO-mf NAD binding EnsemblGenomesN/AIEA
KOG0023 KOG Alcohol dehydrogenase, class V JGI N/AIEA
PTHR11695Panther ALCOHOL DEHYDROGENASE RELATED JGI N/AIEA
PTHR11695:SF285Panther L-THREONINE 3-DEHYDROGENASE JGI N/AIEA
PF00107PFAM Zinc-binding dehydrogenase JGI N/AIEA
PF08240PFAM Alcohol dehydrogenase GroES-like domain JGI N/AIEA

Expression Patterns of Glyma.05g187700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g187700 not represented in the dataset
Glyma.05g187700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g187700
ParalogEvidenceComments
Glyma.08g145900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g187700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g32130 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.05g187700
>Glyma.05g187700.2 sequence-type=transcript locus=Glyma.05g187700 ID=Glyma.05g187700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATTGCATACTGTCACATCACTTCAGCAGCAAAGGGAAAAGCAAACAGAGTGTCTAATCGAAGATAGAAGAAGAGATGGCTAAATCTCCAGAAACTGAACTTCCCGTCGAAGCTTTCGGTTGGGCTGCTTCAGACACTTCTGGCACCCTTGCACCTTTTCATTTCTCCAGAAGAGAAAATGGCGTTGATGACGTCACTCTCAAGATTCTCTTCTGCGGGGTTTGCCACTCGGATCTCCACACTCTCAAAAACGACTGGGGTTTCACCACTTACCCTGTCGTTCCTGGGCATGAAATTGTTGGTGTTGTGACAAAAGTTGGCAACAATGTGAAAAACTTCAAAGTGGGTGATAAAGTTGGAGTTGGTGTGATAGTGGAGTCTTGCAAGGAATGTGAAAGTTGCCAACAAGATCTGGAGAGTTACTGTCCCCGCCCTGTTTTTACCTATAACTCTCCTTATTATGATGGGACACGAACCAAAGGTGGTTATTCTAACATCATGGTTGTGCACCAGCGTTATGTGCTCCGATTTCCTGAGAACTTGCCTCTTGATGCTGGTGCTCCTCTGCTGTGTGCTGGGATAACTGTGTATAGCCCGATGAAATATTATGGGATGACAGAGCCAGGCAAACATTTGGGAGTGGCAGGGCTTGGTGGGTTAGGTCATGTTGCAATCAAACTTGCTAAGGCGTTTGGGCTGAAAGTTACTGTCATCAGTAGCTCTCCTAACAAGCAAGCTGAGGCCATTGACCGACTCGGGGCTGATTCTTTCCTTGTTTCATCAGACCCTGCAAAAATGAAGGTAAGTGAGATACAAATACAAGATATAAAGAGTTTGAAAGAACTCGTTTCATTTGGGTTCTGGTTTTTGACAAATTTACTGGTGCTTCATAATGCAGTTCTGTAGGAATTTTGTAAGGATAATGGTATTCTTATGTTGCTGTTGGTGGTCTCTGGTAGCTAGTAATTTGTGATTTACTTGTTACTAAAATTTACTATTTTGCAATGGTAGTTTTTTATTTTACTTATTGCCATATTT

>Glyma.05g187700.3 sequence-type=transcript locus=Glyma.05g187700 ID=Glyma.05g187700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAATGTGACCAAGCATGTGATGATATTTCAATGTGATTCTGGACGATTCAGCATGAATCCAATTTGTAGTGTTAATAATGCAAGATTCGTTTATCAAACTTATTCAAGTAGATTAATTGGCTTTATTCTTTTGCATGAAATTGTTGGTGTTGTGACAAAAGTTGGCAACAATGTGAAAAACTTCAAAGTGGGTGATAAAGTTGGAGTTGGTGTGATAGTGGAGTCTTGCAAGGAATGTGAAAGTTGCCAACAAGATCTGGAGAGTTACTGTCCCCGCCCTGTTTTTACCTATAACTCTCCTTATTATGATGGGACACGAACCAAAGGTGGTTATTCTAACATCATGGTTGTGCACCAGCGTTATGTGCTCCGATTTCCTGAGAACTTGCCTCTTGATGCTGGTGCTCCTCTGCTGTGTGCTGGGATAACTGTGTATAGCCCGATGAAATATTATGGGATGACAGAGCCAGGCAAACATTTGGGAGTGGCAGGGCTTGGTGGGTTAGGTCATGTTGCAATCAAACTTGCTAAGGCGTTTGGGCTGAAAGTTACTGTCATCAGTAGCTCTCCTAACAAGCAAGCTGAGGCCATTGACCGACTCGGGGCTGATTCTTTCCTTGTTTCATCAGACCCTGCAAAAATGAAGGTGGCTTTGGGAACCATGGACTATATCATAGACACAATTTCTGCTGTTCATTCCCTGATTCCACTGCTTGGTCTGCTGAAGCTGAATGGGAAGCTAGTTACTGTAGGGTTGCCTAACAAGCCCCTTGAGCTTCCTATCTTTCCATTAGTTGCAGGACGGAAACTTATAGGGGGGAGCAACTTTGGAGGGATCAAAGAAACTCAGGAAATGCTTGATTTCTGCGCAAAGCACAACATAACTGCAGATATTGAGCTGATTAAGATGGATCAGATCAACACAGCCATGGAAAGGCTTAGCAAAGCTGATGTGAAATATCGCTTTGTGATTGATGTGGCGAACTCTTTCGCAAGTTTGTAGAAGCCACCATGATTCTCCAACTCTTTGCATGTGTGGCCTTTAGATGTCTCAGTATTTTGAAAGTAGATTGGTGGTATAAGTAGTCTATAAGATGTTGAACTTTAAAGATGAGAACATCTGCTAATTAATAATACTTTGGGTTTTGAATTTATATTATGTTCCTTTATGTTGATGAAGTCGTTGACCAAGCGTTTCGATTTTT
Coding sequences of Glyma.05g187700
>Glyma.05g187700.1 sequence-type=CDS polypeptide=Glyma.05g187700.1.p locus=Glyma.05g187700 ID=Glyma.05g187700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTAAATCTCCAGAAACTGAACTTCCCGTCGAAGCTTTCGGTTGGGCTGCTTCAGACACTTCTGGCACCCTTGCACCTTTTCATTTCTCCAGAAGAGAAAATGGCGTTGATGACGTCACTCTCAAGATTCTCTTCTGCGGGGTTTGCCACTCGGATCTCCACACTCTCAAAAACGACTGGGGTTTCACCACTTACCCTGTCGTTCCTGGGCATGAAATTGTTGGTGTTGTGACAAAAGTTGGCAACAATGTGAAAAACTTCAAAGTGGGTGATAAAGTTGGAGTTGGTGTGATAGTGGAGTCTTGCAAGGAATGTGAAAGTTGCCAACAAGATCTGGAGAGTTACTGTCCCCGCCCTGTTTTTACCTATAACTCTCCTTATTATGATGGGACACGAACCAAAGGTGGTTATTCTAACATCATGGTTGTGCACCAGCGTTATGTGCTCCGATTTCCTGAGAACTTGCCTCTTGATGCTGGTGCTCCTCTGCTGTGTGCTGGGATAACTGTGTATAGCCCGATGAAATATTATGGGATGACAGAGCCAGGCAAACATTTGGGAGTGGCAGGGCTTGGTGGGTTAGGTCATGTTGCAATCAAACTTGCTAAGGCGTTTGGGCTGAAAGTTACTGTCATCAGTAGCTCTCCTAACAAGCAAGCTGAGGCCATTGACCGACTCGGGGCTGATTCTTTCCTTGTTTCATCAGACCCTGCAAAAATGAAGGTGGCTTTGGGAACCATGGACTATATCATAGACACAATTTCTGCTGTTCATTCCCTGATTCCACTGCTTGGTCTGCTGAAGCTGAATGGGAAGCTAGTTACTGTAGGGTTGCCTAACAAGCCCCTTGAGCTTCCTATCTTTCCATTAGTTGCAGGACGGAAACTTATAGGGGGGAGCAACTTTGGAGGGATCAAAGAAACTCAGGAAATGCTTGATTTCTGCGCAAAGCACAACATAACTGCAGATATTGAGCTGATTAAGATGGATCAGATCAACACAGCCATGGAAAGGCTTAGCAAAGCTGATGTGAAATATCGCTTTGTGATTGATGTGGCGAACTCTTTCGCAAGTTTGTAG

>Glyma.05g187700.2 sequence-type=CDS polypeptide=Glyma.05g187700.2.p locus=Glyma.05g187700 ID=Glyma.05g187700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTAAATCTCCAGAAACTGAACTTCCCGTCGAAGCTTTCGGTTGGGCTGCTTCAGACACTTCTGGCACCCTTGCACCTTTTCATTTCTCCAGAAGAGAAAATGGCGTTGATGACGTCACTCTCAAGATTCTCTTCTGCGGGGTTTGCCACTCGGATCTCCACACTCTCAAAAACGACTGGGGTTTCACCACTTACCCTGTCGTTCCTGGGCATGAAATTGTTGGTGTTGTGACAAAAGTTGGCAACAATGTGAAAAACTTCAAAGTGGGTGATAAAGTTGGAGTTGGTGTGATAGTGGAGTCTTGCAAGGAATGTGAAAGTTGCCAACAAGATCTGGAGAGTTACTGTCCCCGCCCTGTTTTTACCTATAACTCTCCTTATTATGATGGGACACGAACCAAAGGTGGTTATTCTAACATCATGGTTGTGCACCAGCGTTATGTGCTCCGATTTCCTGAGAACTTGCCTCTTGATGCTGGTGCTCCTCTGCTGTGTGCTGGGATAACTGTGTATAGCCCGATGAAATATTATGGGATGACAGAGCCAGGCAAACATTTGGGAGTGGCAGGGCTTGGTGGGTTAGGTCATGTTGCAATCAAACTTGCTAAGGCGTTTGGGCTGAAAGTTACTGTCATCAGTAGCTCTCCTAACAAGCAAGCTGAGGCCATTGACCGACTCGGGGCTGATTCTTTCCTTGTTTCATCAGACCCTGCAAAAATGAAGGTAAGTGAGATACAAATACAAGATATAAAGAGTTTGAAAGAACTCGTTTCATTTGGGTTCTGGTTTTTGACAAATTTACTGGTGCTTCATAATGCAGTTCTGTAG

>Glyma.05g187700.3 sequence-type=CDS polypeptide=Glyma.05g187700.3.p locus=Glyma.05g187700 ID=Glyma.05g187700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATATTTCAATGTGATTCTGGACGATTCAGCATGAATCCAATTTGTAGTGTTAATAATGCAAGATTCGTTTATCAAACTTATTCAAGTAGATTAATTGGCTTTATTCTTTTGCATGAAATTGTTGGTGTTGTGACAAAAGTTGGCAACAATGTGAAAAACTTCAAAGTGGGTGATAAAGTTGGAGTTGGTGTGATAGTGGAGTCTTGCAAGGAATGTGAAAGTTGCCAACAAGATCTGGAGAGTTACTGTCCCCGCCCTGTTTTTACCTATAACTCTCCTTATTATGATGGGACACGAACCAAAGGTGGTTATTCTAACATCATGGTTGTGCACCAGCGTTATGTGCTCCGATTTCCTGAGAACTTGCCTCTTGATGCTGGTGCTCCTCTGCTGTGTGCTGGGATAACTGTGTATAGCCCGATGAAATATTATGGGATGACAGAGCCAGGCAAACATTTGGGAGTGGCAGGGCTTGGTGGGTTAGGTCATGTTGCAATCAAACTTGCTAAGGCGTTTGGGCTGAAAGTTACTGTCATCAGTAGCTCTCCTAACAAGCAAGCTGAGGCCATTGACCGACTCGGGGCTGATTCTTTCCTTGTTTCATCAGACCCTGCAAAAATGAAGGTGGCTTTGGGAACCATGGACTATATCATAGACACAATTTCTGCTGTTCATTCCCTGATTCCACTGCTTGGTCTGCTGAAGCTGAATGGGAAGCTAGTTACTGTAGGGTTGCCTAACAAGCCCCTTGAGCTTCCTATCTTTCCATTAGTTGCAGGACGGAAACTTATAGGGGGGAGCAACTTTGGAGGGATCAAAGAAACTCAGGAAATGCTTGATTTCTGCGCAAAGCACAACATAACTGCAGATATTGAGCTGATTAAGATGGATCAGATCAACACAGCCATGGAAAGGCTTAGCAAAGCTGATGTGAAATATCGCTTTGTGATTGATGTGGCGAACTCTTTCGCAAGTTTGTAG
Predicted protein sequences of Glyma.05g187700
>Glyma.05g187700.1.p sequence-type=predicted peptide transcript=Glyma.05g187700.1 locus=Glyma.05g187700 ID=Glyma.05g187700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAKSPETELPVEAFGWAASDTSGTLAPFHFSRRENGVDDVTLKILFCGVCHSDLHTLKNDWGFTTYPVVPGHEIVGVVTKVGNNVKNFKVGDKVGVGVIVESCKECESCQQDLESYCPRPVFTYNSPYYDGTRTKGGYSNIMVVHQRYVLRFPENLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAIKLAKAFGLKVTVISSSPNKQAEAIDRLGADSFLVSSDPAKMKVALGTMDYIIDTISAVHSLIPLLGLLKLNGKLVTVGLPNKPLELPIFPLVAGRKLIGGSNFGGIKETQEMLDFCAKHNITADIELIKMDQINTAMERLSKADVKYRFVIDVANSFASL*

>Glyma.05g187700.2.p sequence-type=predicted peptide transcript=Glyma.05g187700.2 locus=Glyma.05g187700 ID=Glyma.05g187700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAKSPETELPVEAFGWAASDTSGTLAPFHFSRRENGVDDVTLKILFCGVCHSDLHTLKNDWGFTTYPVVPGHEIVGVVTKVGNNVKNFKVGDKVGVGVIVESCKECESCQQDLESYCPRPVFTYNSPYYDGTRTKGGYSNIMVVHQRYVLRFPENLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAIKLAKAFGLKVTVISSSPNKQAEAIDRLGADSFLVSSDPAKMKVSEIQIQDIKSLKELVSFGFWFLTNLLVLHNAVL*

>Glyma.05g187700.3.p sequence-type=predicted peptide transcript=Glyma.05g187700.3 locus=Glyma.05g187700 ID=Glyma.05g187700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIFQCDSGRFSMNPICSVNNARFVYQTYSSRLIGFILLHEIVGVVTKVGNNVKNFKVGDKVGVGVIVESCKECESCQQDLESYCPRPVFTYNSPYYDGTRTKGGYSNIMVVHQRYVLRFPENLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAIKLAKAFGLKVTVISSSPNKQAEAIDRLGADSFLVSSDPAKMKVALGTMDYIIDTISAVHSLIPLLGLLKLNGKLVTVGLPNKPLELPIFPLVAGRKLIGGSNFGGIKETQEMLDFCAKHNITADIELIKMDQINTAMERLSKADVKYRFVIDVANSFASL*






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