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Report for Sequence Feature Glyma.05g185800

Feature Type:gene_model
Chromosome:Gm05
Start:37263576
stop:37265612
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g185800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G20580.1AT Small nuclear ribonucleoprotein family protein JGI N/AIEA
GO:0000245GO-bp spliceosomal complex assembly EnsemblGenomesN/AIEA
GO:0000387GO-bp spliceosomal snRNP assembly EnsemblGenomesN/AIEA
GO:0006396GO-bp RNA processing EnsemblGenomesN/AIEA
GO:0000243GO-cc commitment complex EnsemblGenomesN/AIEA
GO:0005681GO-cc spliceosomal complex EnsemblGenomesN/AIEA
GO:0005682GO-cc U5 snRNP EnsemblGenomesN/AIEA
GO:0005685GO-cc U1 snRNP EnsemblGenomesN/AIEA
GO:0005686GO-cc U2 snRNP EnsemblGenomesN/AIEA
GO:0005687GO-cc U4 snRNP EnsemblGenomesN/AIEA
GO:0005689GO-cc U12-type spliceosomal complex EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0034715GO-cc pICln-Sm protein complex EnsemblGenomesN/AIEA
GO:0034719GO-cc SMN-Sm protein complex EnsemblGenomesN/AIEA
GO:0071010GO-cc prespliceosome EnsemblGenomesN/AIEA
GO:0071011GO-cc precatalytic spliceosome EnsemblGenomesN/AIEA
GO:0071013GO-cc catalytic step 2 spliceosome EnsemblGenomesN/AIEA
GO:0097526GO-cc spliceosomal tri-snRNP complex EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
KOG3172 KOG Small nuclear ribonucleoprotein Sm D3 JGI N/AIEA
PTHR23338Panther SMALL NUCLEAR RIBONUCLEOPROTEIN SM JGI N/AIEA
PF01423PFAM LSM domain JGI N/AIEA

Expression Patterns of Glyma.05g185800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g185800 not represented in the dataset
Glyma.05g185800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g185800
ParalogEvidenceComments
Glyma.08g143900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g185800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g31950 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.05g185800
>Glyma.05g185800.2 sequence-type=transcript locus=Glyma.05g185800 ID=Glyma.05g185800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGGAAAAATAGGGcacaacacaacacaaaagtcacaatcacaaATCTGAGTATAGTGGAGTAGGGTTTTTTTGCGTTTGAGAGAAGCATGAGCAGGAGTTTGGGAATTCCGGTGAAGCTGCTCCACGAGGCTTCGGGGCACGTGGTGACGGTGGAGCTCAAGAGCGGAGAACTCTACAGAGGCAGCATGATCGAGTGCGAGGACAACTGGAACTGCCAACTCGAGAGCATCACCTACACTGCCAAGGATGGCAAAACATCGCAACTTGAGCATGTTTTTATTCGAGGAAGCAAAGTCAGGTTTATGGTCATCCCAGACATGCTGAAGAATGCGCCTATGTTTAAGCGTTTGGATGCAAGAATCAAGGTACCTTCTTATTTCCAAGTTATTAAGTACTCCGTATTCGTTTTTTTGTGTGCTTTTGTATTTTATGCTTTCTGAACCTCTTGAAGGGCAAGGGTGCATCACTTGGTGTTGGTAGGGGCAGAGCAGTTGCAATGCGAGCAAAGGCTCAAGCTGCTGGGCGTGGAGCTGCACCTGGAAGGGGTGTACCACCAGTGCGGAGGTGATCACCATTCATATAATTTGTATTCTCCCTGTCTGTTGGACATGTTTATGTGACAAAGAAATTCGAACAGAAACTGAGTAAAGACATTACAGATTACTCTTTATGGATAGTACTTGATCCCAAATTTGTTCTCATCATCTCTAGTATTTTGATCTGCACTGTGTACTACTTGGCTAGGAGGATTTTGTAGAAGGAATATTTGTTAAAATGGTACAAGATAGTATCAGTTACATAGGGGCAGTTTGACAACTGTTAATGCTGGTTTAGAACTGTTCGTGGTAAATTATGACTCGTTTGAAACTGTGGAGATTGT
Coding sequences of Glyma.05g185800
>Glyma.05g185800.1 sequence-type=CDS polypeptide=Glyma.05g185800.1.p locus=Glyma.05g185800 ID=Glyma.05g185800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGCAGGAGTTTGGGAATTCCGGTGAAGCTGCTCCACGAGGCTTCGGGGCACGTGGTGACGGTGGAGCTCAAGAGCGGAGAACTCTACAGAGGCAGCATGATCGAGTGCGAGGACAACTGGAACTGCCAACTCGAGAGCATCACCTACACTGCCAAGGATGGCAAAACATCGCAACTTGAGCATGTTTTTATTCGAGGAAGCAAAGTCAGGTTTATGGTCATCCCAGACATGCTGAAGAATGCGCCTATGTTTAAGCGTTTGGATGCAAGAATCAAGGGCAAGGGTGCATCACTTGGTGTTGGTAGGGGCAGAGCAGTTGCAATGCGAGCAAAGGCTCAAGCTGCTGGGCGTGGAGCTGCACCTGGAAGGGGTGTACCACCAGTGCGGAGGTGA

>Glyma.05g185800.2 sequence-type=CDS polypeptide=Glyma.05g185800.2.p locus=Glyma.05g185800 ID=Glyma.05g185800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGCAGGAGTTTGGGAATTCCGGTGAAGCTGCTCCACGAGGCTTCGGGGCACGTGGTGACGGTGGAGCTCAAGAGCGGAGAACTCTACAGAGGCAGCATGATCGAGTGCGAGGACAACTGGAACTGCCAACTCGAGAGCATCACCTACACTGCCAAGGATGGCAAAACATCGCAACTTGAGCATGTTTTTATTCGAGGAAGCAAAGTCAGGTTTATGGTCATCCCAGACATGCTGAAGAATGCGCCTATGTTTAAGCGTTTGGATGCAAGAATCAAGGTACCTTCTTATTTCCAAGTTATTAAGTACTCCGTATTCGTTTTTTTGTGTGCTTTTGTATTTTATGCTTTCTGA
Predicted protein sequences of Glyma.05g185800
>Glyma.05g185800.1.p sequence-type=predicted peptide transcript=Glyma.05g185800.1 locus=Glyma.05g185800 ID=Glyma.05g185800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMIECEDNWNCQLESITYTAKDGKTSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGAAPGRGVPPVRR*

>Glyma.05g185800.2.p sequence-type=predicted peptide transcript=Glyma.05g185800.2 locus=Glyma.05g185800 ID=Glyma.05g185800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMIECEDNWNCQLESITYTAKDGKTSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKVPSYFQVIKYSVFVFLCAFVFYAF*






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