Glyma.05g182600

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Report for Sequence Feature Glyma.05g182600

Feature Type:	gene_model
Chromosome:	Gm05
Start:	37038089
stop:	37042117
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.05g182600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G39660.1	AT	alanine:glyoxylate aminotransferase 2	JGI	N/A	IEA
GO:0005739	GO-cc	mitochondrion	EnsemblGenomes	N/A	IEA
GO:0003824	GO-mf	catalytic activity	EnsemblGenomes	N/A	IEA
GO:0008453	GO-mf	alanine-glyoxylate transaminase activity	EnsemblGenomes	N/A	IEA
GO:0008483	GO-mf	transaminase activity	EnsemblGenomes	N/A	IEA
GO:0008483	GO-mf	transaminase activity	JGI	N/A	IEA
GO:0030170	GO-mf	pyridoxal phosphate binding	EnsemblGenomes	N/A	IEA
GO:0030170	GO-mf	pyridoxal phosphate binding	JGI	N/A	IEA
GO:0042802	GO-mf	identical protein binding	EnsemblGenomes	N/A	IEA
KOG1404	KOG	Alanine-glyoxylate aminotransferase AGT2	JGI	N/A	IEA
PTHR11986	Panther	AMINOTRANSFERASE CLASS III	JGI	N/A	IEA
PTHR11986:SF23	Panther	ACETYLORNITHINE AMINOTRANSFERASE, MITOCHONDRIAL	JGI	N/A	IEA
PF00202	PFAM	Aminotransferase class-III	JGI	N/A	IEA
GLYSYN-ALA-PWY	SoyCyc9	glycine biosynthesis III	Plant Metabolic Network		ISS
GN7V-49174	SoyCyc9-rxn	alanine-glyoxylate transaminase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.05g182600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g182600 not represented in the dataset	Glyma.05g182600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.05g182600

Paralog	Evidence	Comments
Glyma.08g140200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g182600 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma05g31630	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.05g182600

Limit To All Plant Sequences

>Glyma.05g182600.2 sequence-type=transcript locus=Glyma.05g182600 ID=Glyma.05g182600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCCCTCCCTCCCTCCCTCAACGGACGCCAAATATTTCAGTTTCACATATGCACATGCATTCTCTCTCTCTCTCTCCACAATCTCACCTCGCGTGTCAGAATAACTCGTGACTCACTCAGTCGCCACAACACAAACATGGTAATAAAataataaaatactatacatatatatatataCCCACCATCGAAAAATCAGAACAGAACCCAACCAAAGCAGCTATGGCGGCGATGCAGAGGCCACTCAAGAGAACCATTGCAATCGCCAAGCAACGCGCGTGCTTTTCCTCTCTCCTACcctccgccgctgccgccgccgccgccgataccgtcgcgcctccgcagctccccccgTTCGATCACCAGCCGCACCCTTACAACGGTCCCTCCGCCGATGAAGTCTTCGCCAAGCGCAAAACGTTCCTCGGTCCTTCCGTCTTCCACTACTATAAGAAACCTCTGAATATCGTGGAAGGGAAGATGCAATATCTTTATGATGATAGTGGGAGGCGTTACCTTGATGCATTTGCGGGAATAGTTACTGTTTCTTGCGGACATTGCCACCCTGAAATTTTGAATGCTATCACGGAGCAGAGTAAACTTCTGCAGCATGCTACAACCATATATCTACACCATACAATAGGTGACTTTGCTGAGGCATTGGCAGCAAAAATGCCTGGAAACCTTAAGGTTGTTTATTTTGTAAATTCTGGTTCAGAAGCAAATGAATTAGCAATGATGATGGCCCGTTTATATACTGGTAATCTCGGTATGATTTCTTTGAGAAATGCATATCATGGGGGGAGTTCTAGTACACTTGGTCTGACTGCTCTGAACTCGTGGAAATACCCAATTCCAGAGGGCCATGTTCATCATGTTATGAATCCAGATCCATATCATGGAGCCTTTGGTACAGATGCTGCTAGTTATGCAAATGATGTCCAAGACCATATTGACTACGGAACTTCGGGAAAAGTTGCTGGATTTATAGCCGAATCAATTCAGGGAGTTGGCGGAGCAGTTGAACTGGCACCAGGGTATTTGAAACTTGTTTATGACATTATACATAAGGCTGGTGGTGTCTGCATTGCCGATGAAGTTCAAACTGGTTTTGGCCGAACAGGAAGCCATTATTGGGGATTTGAGACACAGGGTGTCATTCCTGATATAGTTACCATGGCAAAGGGTATTGGCAATGGTCTGCCATTGGGAGCTGTAGTTACAACTCCAGAAATTGCAAGTGTGATGGCCCAAAAGATTCAATTTAATACCTTTGGTGGGAACCCTGTCTGCTCTGCTGGTGGACTTGCAGTGCTTAGGGTTCTTGATAAGGAGAAGCGTCAAGCTCACTGTGCTGATGTCGGATCTTATTTGCTTGAACGTTTGAGATTTCTCATGGAAAGACATGACATCATAGGAAATGTCAGGGGAAGGGGACTAATGGTAGGCTTAGAGTTGGTTACTGACCGAACCAACAAGACACCTGCAAAGGCTGAAACTGCTGTTGTGTTTGAAAAACTCAGAGGTTACACAAGAACCATTTTATTCTATGCATGTGAAGCCTTATTTTCCAAAATAACTTCCAAACAGTCTTAACAATTTATTTGTATATGCATTGAAGAACTCGGTGTGCTAGTTGGGAAAGGAGGACTTCATGGCAATGTTTTCAGGATCAAGCCACCAATGTGTTTCTCCAAAGATGATGCAGATTTTCTTGTGGATGCCTTGGACTATTCTCTATCTAAGTTGTGAGCTGATTGTGCATCTTGCTAGCATGAAATGAAATCTTCGACAATGGAGTCAAATTACTACAAGCCAACAACAAAAAGCTCATTTAGTTCATAGAAATCACCATGAATAATGTAATGTTCTCCCCGTTGAGAAGAGAGGGGGTTTCCCTCCCTTTTTGCTGAACATTATAAGTTGAATGCTGACTATTATTGTATATAAATTTGGGTTTCATGACATCAAAAAGTTGCATTCAATCTGCAGAGTAATGTTTAAATCCATATAGAAAGAGACTACATTTGC

Coding sequences of Glyma.05g182600

Limit To All Plant Sequences

>Glyma.05g182600.1 sequence-type=CDS polypeptide=Glyma.05g182600.1.p locus=Glyma.05g182600 ID=Glyma.05g182600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGCGATGCAGAGGCCACTCAAGAGAACCATTGCAATCGCCAAGCAACGCGCGTGCTTTTCCTCTCTCCTACCCTCCGCCGCTGCCGCCGCCGCCGCCGATACCGTCGCGCCTCCGCAGCTCCCCCCGTTCGATCACCAGCCGCACCCTTACAACGGTCCCTCCGCCGATGAAGTCTTCGCCAAGCGCAAAACGTTCCTCGGTCCTTCCGTCTTCCACTACTATAAGAAACCTCTGAATATCGTGGAAGGGAAGATGCAATATCTTTATGATGATAGTGGGAGGCGTTACCTTGATGCATTTGCGGGAATAGTTACTGTTTCTTGCGGACATTGCCACCCTGAAATTTTGAATGCTATCACGGAGCAGAGTAAACTTCTGCAGCATGCTACAACCATATATCTACACCATACAATAGGTGACTTTGCTGAGGCATTGGCAGCAAAAATGCCTGGAAACCTTAAGGTTGTTTATTTTGTAAATTCTGGTTCAGAAGCAAATGAATTAGCAATGATGATGGCCCGTTTATATACTGGTAATCTCGGTATGATTTCTTTGAGAAATGCATATCATGGGGGGAGTTCTAGTACACTTGGTCTGACTGCTCTGAACTCGTGGAAATACCCAATTCCAGAGGGCCATGTTCATCATGTTATGAATCCAGATCCATATCATGGAGCCTTTGGTACAGATGCTGCTAGTTATGCAAATGATGTCCAAGACCATATTGACTACGGAACTTCGGGAAAAGTTGCTGGATTTATAGCCGAATCAATTCAGGGAGTTGGCGGAGCAGTTGAACTGGCACCAGGGTATTTGAAACTTGTTTATGACATTATACATAAGGCTGGTGGTGTCTGCATTGCCGATGAAGTTCAAACTGGTTTTGGCCGAACAGGAAGCCATTATTGGGGATTTGAGACACAGGGTGTCATTCCTGATATAGTTACCATGGCAAAGGGTATTGGCAATGGTCTGCCATTGGGAGCTGTAGTTACAACTCCAGAAATTGCAAGTGTGATGGCCCAAAAGATTCAATTTAATACCTTTGGTGGGAACCCTGTCTGCTCTGCTGGTGGACTTGCAGTGCTTAGGGTTCTTGATAAGGAGAAGCGTCAAGCTCACTGTGCTGATGTCGGATCTTATTTGCTTGAACGTTTGAGATTTCTCATGGAAAGACATGACATCATAGGAAATGTCAGGGGAAGGGGACTAATGGTAGGCTTAGAGTTGGTTACTGACCGAACCAACAAGACACCTGCAAAGGCTGAAACTGCTGTTGTGTTTGAAAAACTCAGAGAACTCGGTGTGCTAGTTGGGAAAGGAGGACTTCATGGCAATGTTTTCAGGATCAAGCCACCAATGTGTTTCTCCAAAGATGATGCAGATTTTCTTGTGGATGCCTTGGACTATTCTCTATCTAAGTTGTGA

>Glyma.05g182600.2 sequence-type=CDS polypeptide=Glyma.05g182600.2.p locus=Glyma.05g182600 ID=Glyma.05g182600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGCGATGCAGAGGCCACTCAAGAGAACCATTGCAATCGCCAAGCAACGCGCGTGCTTTTCCTCTCTCCTACCCTCCGCCGCTGCCGCCGCCGCCGCCGATACCGTCGCGCCTCCGCAGCTCCCCCCGTTCGATCACCAGCCGCACCCTTACAACGGTCCCTCCGCCGATGAAGTCTTCGCCAAGCGCAAAACGTTCCTCGGTCCTTCCGTCTTCCACTACTATAAGAAACCTCTGAATATCGTGGAAGGGAAGATGCAATATCTTTATGATGATAGTGGGAGGCGTTACCTTGATGCATTTGCGGGAATAGTTACTGTTTCTTGCGGACATTGCCACCCTGAAATTTTGAATGCTATCACGGAGCAGAGTAAACTTCTGCAGCATGCTACAACCATATATCTACACCATACAATAGGTGACTTTGCTGAGGCATTGGCAGCAAAAATGCCTGGAAACCTTAAGGTTGTTTATTTTGTAAATTCTGGTTCAGAAGCAAATGAATTAGCAATGATGATGGCCCGTTTATATACTGGTAATCTCGGTATGATTTCTTTGAGAAATGCATATCATGGGGGGAGTTCTAGTACACTTGGTCTGACTGCTCTGAACTCGTGGAAATACCCAATTCCAGAGGGCCATGTTCATCATGTTATGAATCCAGATCCATATCATGGAGCCTTTGGTACAGATGCTGCTAGTTATGCAAATGATGTCCAAGACCATATTGACTACGGAACTTCGGGAAAAGTTGCTGGATTTATAGCCGAATCAATTCAGGGAGTTGGCGGAGCAGTTGAACTGGCACCAGGGTATTTGAAACTTGTTTATGACATTATACATAAGGCTGGTGGTGTCTGCATTGCCGATGAAGTTCAAACTGGTTTTGGCCGAACAGGAAGCCATTATTGGGGATTTGAGACACAGGGTGTCATTCCTGATATAGTTACCATGGCAAAGGGTATTGGCAATGGTCTGCCATTGGGAGCTGTAGTTACAACTCCAGAAATTGCAAGTGTGATGGCCCAAAAGATTCAATTTAATACCTTTGGTGGGAACCCTGTCTGCTCTGCTGGTGGACTTGCAGTGCTTAGGGTTCTTGATAAGGAGAAGCGTCAAGCTCACTGTGCTGATGTCGGATCTTATTTGCTTGAACGTTTGAGATTTCTCATGGAAAGACATGACATCATAGGAAATGTCAGGGGAAGGGGACTAATGGTAGGCTTAGAGTTGGTTACTGACCGAACCAACAAGACACCTGCAAAGGCTGAAACTGCTGTTGTGTTTGAAAAACTCAGAGGTTACACAAGAACCATTTTATTCTATGCATGTGAAGCCTTATTTTCCAAAATAACTTCCAAACAGTCTTAA

Predicted protein sequences of Glyma.05g182600

Limit To All Plant Sequences

>Glyma.05g182600.1.p sequence-type=predicted peptide transcript=Glyma.05g182600.1 locus=Glyma.05g182600 ID=Glyma.05g182600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAMQRPLKRTIAIAKQRACFSSLLPSAAAAAAADTVAPPQLPPFDHQPHPYNGPSADEVFAKRKTFLGPSVFHYYKKPLNIVEGKMQYLYDDSGRRYLDAFAGIVTVSCGHCHPEILNAITEQSKLLQHATTIYLHHTIGDFAEALAAKMPGNLKVVYFVNSGSEANELAMMMARLYTGNLGMISLRNAYHGGSSSTLGLTALNSWKYPIPEGHVHHVMNPDPYHGAFGTDAASYANDVQDHIDYGTSGKVAGFIAESIQGVGGAVELAPGYLKLVYDIIHKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIASVMAQKIQFNTFGGNPVCSAGGLAVLRVLDKEKRQAHCADVGSYLLERLRFLMERHDIIGNVRGRGLMVGLELVTDRTNKTPAKAETAVVFEKLRELGVLVGKGGLHGNVFRIKPPMCFSKDDADFLVDALDYSLSKL*

>Glyma.05g182600.2.p sequence-type=predicted peptide transcript=Glyma.05g182600.2 locus=Glyma.05g182600 ID=Glyma.05g182600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAMQRPLKRTIAIAKQRACFSSLLPSAAAAAAADTVAPPQLPPFDHQPHPYNGPSADEVFAKRKTFLGPSVFHYYKKPLNIVEGKMQYLYDDSGRRYLDAFAGIVTVSCGHCHPEILNAITEQSKLLQHATTIYLHHTIGDFAEALAAKMPGNLKVVYFVNSGSEANELAMMMARLYTGNLGMISLRNAYHGGSSSTLGLTALNSWKYPIPEGHVHHVMNPDPYHGAFGTDAASYANDVQDHIDYGTSGKVAGFIAESIQGVGGAVELAPGYLKLVYDIIHKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIASVMAQKIQFNTFGGNPVCSAGGLAVLRVLDKEKRQAHCADVGSYLLERLRFLMERHDIIGNVRGRGLMVGLELVTDRTNKTPAKAETAVVFEKLRGYTRTILFYACEALFSKITSKQS*

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