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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G22250.2 | AT | aspartate aminotransferase | JGI | N/A | IEA |
| GO:0009058 | GO-bp | biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009058 | GO-bp | biosynthetic process | JGI | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0030170 | GO-mf | pyridoxal phosphate binding | EnsemblGenomes | N/A | IEA |
| GO:0030170 | GO-mf | pyridoxal phosphate binding | JGI | N/A | IEA |
| KOG0257 | KOG | Kynurenine aminotransferase, glutamine transaminase K | JGI | N/A | IEA |
| PTHR11751 | Panther | SUBGROUP I AMINOTRANSFERASE RELATED | JGI | N/A | IEA |
| PTHR11751:SF35 | Panther | JGI | N/A | IEA | |
| PF00155 | PFAM | Aminotransferase class I and II | JGI | N/A | IEA |
| ASPARTATE-DEG1-PWY | SoyCyc9 | L-aspartate degradation I | Plant Metabolic Network | ISS | |
| ASPARTATESYN-PWY | SoyCyc9 | L-aspartate biosynthesis | Plant Metabolic Network | ISS | |
| MALATE-ASPARTATE-SHUTTLE-PWY | SoyCyc9 | L-aspartate degradation II | Plant Metabolic Network | ISS | |
| PWY-3001 | SoyCyc9 | superpathway of L-isoleucine biosynthesis I | Plant Metabolic Network | ISS | |
| PWY-3461 | SoyCyc9 | L-tyrosine biosynthesis II | Plant Metabolic Network | ISS | |
| PWY-3462 | SoyCyc9 | L-phenylalanine biosynthesis II | Plant Metabolic Network | ISS | |
| PWY-3481 | SoyCyc9 | superpathway of L-phenylalanine and L-tyrosine biosynthesis | Plant Metabolic Network | ISS | |
| PWY-6120 | SoyCyc9 | L-tyrosine biosynthesis III | Plant Metabolic Network | ISS | |
| THRESYN-PWY | SoyCyc9 | superpathway of L-threonine biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-50509 | SoyCyc9-rxn | aspartate transaminase | Plant Metabolic Network | ISS |
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Glyma.05g181000 not represented in the dataset |
Glyma.05g181000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.08g138800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma05g31490 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.05g181000.2 sequence-type=transcript locus=Glyma.05g181000 ID=Glyma.05g181000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 atggtgatggaaggggaagaagggaaggagATGAAGCGAAGAGCAAGAGAGTTGAAAGAAACCGCGGTCAAGTCTTTAAGCGTCGGAGGACCATCCTACGAGATGCGTGCTGCAATGGCTAATGTTTGCTTGTTCGCAACAAAAAAGCAGTGCACCAAAAAGCCCGTTCAGAGGGTGGATCATGAAACTGAAGTCAAAGGTTGAAAATTAACCAGCGTGTTTTCGCGCGCGCTCTTTTGCCGAATCTTTCCTACAATAAAATAACCGTCACGTTTGGCGGTTTCGGCTATAAATAAGTAAATTTTTTCTGCGTGTTGTAGTAACTGGGAGTAGGTTTGGTTTAATTTCCCTTAAAGTACTCTTGCCACCTAGGCTTAGAGGTTAATTGGGCTTGCTTCTCCAAACCTTAGTTTAGCCATCCACATTTGTGAAAAACAATAAATGCCATCAGCTTCCTATTTTACCCCCTCATCATTTCCCAACTCCTCATAGACTTGGATTTTCAATGGTCATCGGATGGTGTTCGAAGGAGTTTCTGCTAACTCATATTGTATTTCGGTGTCCCTTTGTTTGCTTTTCGTATTCGTTTCAGGATCTGAGTAGAATATTGTTGGTCTCGTGTGTTTTGCAATCTGGTCAGGTTTGCTTTGGATGAGATGAAAAGAAGAAGGTTGATTTGAATGTGAAAGCGGGGGGCCCATCCCACCAAACTCCCTCTACCTACAGCTGTTGAAGCTTCTCCTTCTTGATTCTTCAGTAACCCCTTCTCTCCCAAAATCTCTCTGTTCAGTTTTCATATGGCGAACACACTATATAACGGCGCCACATGCCGAATCCCTCTCCGGAACCAATCCCTGGCCTTCTCTCGCCACGTTTCCAGATCCCTCTCTTTCCTCCCTATAACACGTGCGGCAAAACAACCCAACGCAATTGCGGTTAAGGCTTCTTCGCACTCTGACTTCGACGTTGACCTTTCGCTCAGTCCTCGTGTCAATGCCGTCAAGCCTTCCAAAACCGTCGCCATCAGCGACCACGCCACCGCTCTCGTCCAAGCCGGCGTTCCCGTCATCCGCCTCGCCGCCGGCGAGCCCGATTTCGACACGCCCGCTCCCATAGCCGAGGCTGGGATTAATGCAATTCGTGAAGGTTACACGAGGTACACGCCCAATGCCGGGACCATGGAACTGCGCCAAGCGATTTGTCACAAGCTAAAAGAAGAGAATGGGATTACTTATACTCCTGACCAGGTTGTGGTTAGTAACGGAGCCAAACAGAGTATTGCTCAGGCAGTGCTTGCAGTTTCCTCCCCTGGAGATGAGGTTATTATTCCAGCTCCATTCTGGGTTAGTTACCCAGAAATGGCAAGGTTGGCTGATGCAACACCTGTGATTCTTCCAACCTTAATATCTGATAATTTCCTTTTGGATCCCAAACTCCTCGAATCCAAAATTACTGAAAGATCAAGACTGCTTATTCTTTGTTCTCCATCTAACCCAACGGGATCTGTCTACCCCAAAGAATTACTTGAAGAGATAGCCCGAATTGTTGCAAAGCACCCCAGGCTTCTGGTTCTCTCTGATGAAATTTACGAACACATAATTTATGCACCAGCAACTCACACGAGCTTTGCATCTTTACCAGGAATGTGGGACAGAACTCTTACTGTGAATGGATTTTCTAAGGCCTTTGCAATGACTGGTTGGCGGCTTGGATATATTGCTGGTCCAAAACATTTTGTTGCAGCATGTGGAAAGATCCAAAGTCAGTTTACTTCAGGGGCCAGTAGTATAGCTCAGAAAGCTGCAGTTGCTGCATTAGGACTAGGCCATGCTGGTGGGGAGGCAGTTTCTACCATGGTGAAAGCATTTAGGGAGCGAAGGGATTTCTTAGTACAAAGTTTTAGAGAAATAGATGGCATCAAGATATCTGAACCCCAGGGAGCATTTTATCTATTCCTTGATCTCAGCTTCTATTATGGAAGAGAAGCTGAAGGATTTGGTAAAATTGTGGATTCTGAGTCCCTCTGTCAATATCTACTGGAGGTGGGCCAGGTAGCCCTGGTGCCAGGGAGTGCATTTGGAGATGACACTTGCATCCGCATCTCTTATGCAGAATCGCTTACAACCCTACAGGCAGCTGTAGAAAGAATTAAGAAAGCACTTGTCCCGCTGAGCTCTGCTGCACTTGTTTAATATCGATGTTTTTTTTGTTGTTATGCGTGTATTTTATTTCTATTTTGGCAATGTGTAATCTGTTTATTCTGAAAATAATAAGCTTTGGCTACTTTTCCACAAATGAAGTGATGCAACTGTCTTATTAATGGTTTAAAATTATAATAACAAAATTGTCCTCCTTTAATGTTACATATGTTGTCTCGAAAGGGGAAGCAAATAAACAGGCGTTCAATGGCTACAA
>Glyma.05g181000.1 sequence-type=CDS polypeptide=Glyma.05g181000.1.p locus=Glyma.05g181000 ID=Glyma.05g181000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCCGAATCCCTCTCCGGAACCAATCCCTGGCCTTCTCTCGCCACGTTTCCAGATCCCTCTCTTTCCTCCCTATGTGAGTTCTCTCCTCTCTTTTTCCCTCCAATTTCACTTCACACACCAATTTCTCTCTCTCACCCTTCGCAGAACACGTGCGGCAAAACAACCCAACGCAATTGCGGTTAAGGCTTCTTCGCACTCTGACTTCGACGTTGACCTTTCGCTCAGTCCTCGTGTCAATGCCGTCAAGCCTTCCAAAACCGTCGCCATCAGCGACCACGCCACCGCTCTCGTCCAAGCCGGCGTTCCCGTCATCCGCCTCGCCGCCGGCGAGCCCGATTTCGACACGCCCGCTCCCATAGCCGAGGCTGGGATTAATGCAATTCGTGAAGGTTACACGAGGTACACGCCCAATGCCGGGACCATGGAACTGCGCCAAGCGATTTGTCACAAGCTAAAAGAAGAGAATGGGATTACTTATACTCCTGACCAGGTTGTGGTTAGTAACGGAGCCAAACAGAGTATTGCTCAGGCAGTGCTTGCAGTTTCCTCCCCTGGAGATGAGGTTATTATTCCAGCTCCATTCTGGGTTAGTTACCCAGAAATGGCAAGGTTGGCTGATGCAACACCTGTGATTCTTCCAACCTTAATATCTGATAATTTCCTTTTGGATCCCAAACTCCTCGAATCCAAAATTACTGAAAGATCAAGACTGCTTATTCTTTGTTCTCCATCTAACCCAACGGGATCTGTCTACCCCAAAGAATTACTTGAAGAGATAGCCCGAATTGTTGCAAAGCACCCCAGGCTTCTGGTTCTCTCTGATGAAATTTACGAACACATAATTTATGCACCAGCAACTCACACGAGCTTTGCATCTTTACCAGGAATGTGGGACAGAACTCTTACTGTGAATGGATTTTCTAAGGCCTTTGCAATGACTGGTTGGCGGCTTGGATATATTGCTGGTCCAAAACATTTTGTTGCAGCATGTGGAAAGATCCAAAGTCAGTTTACTTCAGGGGCCAGTAGTATAGCTCAGAAAGCTGCAGTTGCTGCATTAGGACTAGGCCATGCTGGTGGGGAGGCAGTTTCTACCATGGTGAAAGCATTTAGGGAGCGAAGGGATTTCTTAGTACAAAGTTTTAGAGAAATAGATGGCATCAAGATATCTGAACCCCAGGGAGCATTTTATCTATTCCTTGATCTCAGCTTCTATTATGGAAGAGAAGCTGAAGGATTTGGTAAAATTGTGGATTCTGAGTCCCTCTGTCAATATCTACTGGAGGTGGGCCAGGTAGCCCTGGTGCCAGGGAGTGCATTTGGAGATGACACTTGCATCCGCATCTCTTATGCAGAATCGCTTACAACCCTACAGGCAGCTGTAGAAAGAATTAAGAAAGCACTTGTCCCGCTGAGCTCTGCTGCACTTGTTTAA >Glyma.05g181000.2 sequence-type=CDS polypeptide=Glyma.05g181000.2.p locus=Glyma.05g181000 ID=Glyma.05g181000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGAACACACTATATAACGGCGCCACATGCCGAATCCCTCTCCGGAACCAATCCCTGGCCTTCTCTCGCCACGTTTCCAGATCCCTCTCTTTCCTCCCTATAACACGTGCGGCAAAACAACCCAACGCAATTGCGGTTAAGGCTTCTTCGCACTCTGACTTCGACGTTGACCTTTCGCTCAGTCCTCGTGTCAATGCCGTCAAGCCTTCCAAAACCGTCGCCATCAGCGACCACGCCACCGCTCTCGTCCAAGCCGGCGTTCCCGTCATCCGCCTCGCCGCCGGCGAGCCCGATTTCGACACGCCCGCTCCCATAGCCGAGGCTGGGATTAATGCAATTCGTGAAGGTTACACGAGGTACACGCCCAATGCCGGGACCATGGAACTGCGCCAAGCGATTTGTCACAAGCTAAAAGAAGAGAATGGGATTACTTATACTCCTGACCAGGTTGTGGTTAGTAACGGAGCCAAACAGAGTATTGCTCAGGCAGTGCTTGCAGTTTCCTCCCCTGGAGATGAGGTTATTATTCCAGCTCCATTCTGGGTTAGTTACCCAGAAATGGCAAGGTTGGCTGATGCAACACCTGTGATTCTTCCAACCTTAATATCTGATAATTTCCTTTTGGATCCCAAACTCCTCGAATCCAAAATTACTGAAAGATCAAGACTGCTTATTCTTTGTTCTCCATCTAACCCAACGGGATCTGTCTACCCCAAAGAATTACTTGAAGAGATAGCCCGAATTGTTGCAAAGCACCCCAGGCTTCTGGTTCTCTCTGATGAAATTTACGAACACATAATTTATGCACCAGCAACTCACACGAGCTTTGCATCTTTACCAGGAATGTGGGACAGAACTCTTACTGTGAATGGATTTTCTAAGGCCTTTGCAATGACTGGTTGGCGGCTTGGATATATTGCTGGTCCAAAACATTTTGTTGCAGCATGTGGAAAGATCCAAAGTCAGTTTACTTCAGGGGCCAGTAGTATAGCTCAGAAAGCTGCAGTTGCTGCATTAGGACTAGGCCATGCTGGTGGGGAGGCAGTTTCTACCATGGTGAAAGCATTTAGGGAGCGAAGGGATTTCTTAGTACAAAGTTTTAGAGAAATAGATGGCATCAAGATATCTGAACCCCAGGGAGCATTTTATCTATTCCTTGATCTCAGCTTCTATTATGGAAGAGAAGCTGAAGGATTTGGTAAAATTGTGGATTCTGAGTCCCTCTGTCAATATCTACTGGAGGTGGGCCAGGTAGCCCTGGTGCCAGGGAGTGCATTTGGAGATGACACTTGCATCCGCATCTCTTATGCAGAATCGCTTACAACCCTACAGGCAGCTGTAGAAAGAATTAAGAAAGCACTTGTCCCGCTGAGCTCTGCTGCACTTGTTTAA
>Glyma.05g181000.1.p sequence-type=predicted peptide transcript=Glyma.05g181000.1 locus=Glyma.05g181000 ID=Glyma.05g181000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MPNPSPEPIPGLLSPRFQIPLFPPYVSSLLSFSLQFHFTHQFLSLTLRRTRAAKQPNAIAVKASSHSDFDVDLSLSPRVNAVKPSKTVAISDHATALVQAGVPVIRLAAGEPDFDTPAPIAEAGINAIREGYTRYTPNAGTMELRQAICHKLKEENGITYTPDQVVVSNGAKQSIAQAVLAVSSPGDEVIIPAPFWVSYPEMARLADATPVILPTLISDNFLLDPKLLESKITERSRLLILCSPSNPTGSVYPKELLEEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWDRTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACGKIQSQFTSGASSIAQKAAVAALGLGHAGGEAVSTMVKAFRERRDFLVQSFREIDGIKISEPQGAFYLFLDLSFYYGREAEGFGKIVDSESLCQYLLEVGQVALVPGSAFGDDTCIRISYAESLTTLQAAVERIKKALVPLSSAALV* >Glyma.05g181000.2.p sequence-type=predicted peptide transcript=Glyma.05g181000.2 locus=Glyma.05g181000 ID=Glyma.05g181000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MANTLYNGATCRIPLRNQSLAFSRHVSRSLSFLPITRAAKQPNAIAVKASSHSDFDVDLSLSPRVNAVKPSKTVAISDHATALVQAGVPVIRLAAGEPDFDTPAPIAEAGINAIREGYTRYTPNAGTMELRQAICHKLKEENGITYTPDQVVVSNGAKQSIAQAVLAVSSPGDEVIIPAPFWVSYPEMARLADATPVILPTLISDNFLLDPKLLESKITERSRLLILCSPSNPTGSVYPKELLEEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWDRTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACGKIQSQFTSGASSIAQKAAVAALGLGHAGGEAVSTMVKAFRERRDFLVQSFREIDGIKISEPQGAFYLFLDLSFYYGREAEGFGKIVDSESLCQYLLEVGQVALVPGSAFGDDTCIRISYAESLTTLQAAVERIKKALVPLSSAALV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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