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Report for Sequence Feature Glyma.05g174000

Feature Type:gene_model
Chromosome:Gm05
Start:36314001
stop:36318617
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g174000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G55270.1AT mitogen-activated protein kinase phosphatase 1 JGI N/AIEA
GO:0006470GO-bp protein dephosphorylation EnsemblGenomesN/AIEA
GO:0006470GO-bp protein dephosphorylation JGI N/AIEA
GO:0016311GO-bp dephosphorylation EnsemblGenomesN/AIEA
GO:0035335GO-bp peptidyl-tyrosine dephosphorylation EnsemblGenomesN/AIEA
GO:0004725GO-mf protein tyrosine phosphatase activity EnsemblGenomesN/AIEA
GO:0008138GO-mf protein tyrosine/serine/threonine phosphatase activity EnsemblGenomesN/AIEA
GO:0008138GO-mf protein tyrosine/serine/threonine phosphatase activity JGI N/AIEA
GO:0016791GO-mf phosphatase activity EnsemblGenomesN/AIEA
KOG1718 KOG Dual specificity phosphatase JGI N/AIEA
PTHR10159Panther DUAL SPECIFICITY PROTEIN PHOSPHATASE JGI N/AIEA
PF00782PFAM Dual specificity phosphatase, catalytic domain JGI N/AIEA

Expression Patterns of Glyma.05g174000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g174000 not represented in the dataset
Glyma.05g174000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g174000
ParalogEvidenceComments
Glyma.08g131200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g174000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g30745 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.05g174000
>Glyma.05g174000.2 sequence-type=transcript locus=Glyma.05g174000 ID=Glyma.05g174000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTAGGAGAAGAGAGTAACAACAACAACAACGACCGCGGCGGCGGTCACCGGAGAACAACACATTCCCGATCAGTTTCCTGGACCGACCGGTCTCCGGTTACCCGGAAACCGCCGCGTCCGCTTCAGCCTCTCGCCATCAACAAACGCAGCGTTATGGAGTGGCCGAGCGCCGGCTGCGACGATCTCGGCGATTGGTCTCTTCCACCGACCCCAAGAGGTTCCACCATAACACCAGATTCGGGTTCGGGTAAAGTATTTCAATTCAAGAAAGACTATTATGCGTTCTACGACAAGGAATGTTCGAGAATCGCGGAGCACGTGTACCTGGGGAGTGACACGGTGGCGAAGAGCCAGGAGCTGCTGCGGCGGCACGGAATCACGCACGTGCTCAATTGCGTCGGGTTCGTGTGCCCCGAGTATTTCAAAACAGACTTCGTCTACAAAACGCTCTGGCTGCGGGACTCACCCTCGGAGGACATCACCAGCATTCTCTACGACGTTTTCGATTACTTTGAGGATGTCCGCCAACAGGGCGGGCGCATGTTCGTCCACTGCTGCCAGGGCGTCTCGCGGTCGACCTCGCTGGTCATCGCCTATCTCATGTGGAGGGAAGGCCAGAGCTTCGAGGACGCGTTCCACTACGTCAAGAACGCGCGTGGCGTCACGAACCCCAACATGGGCTTCGCGTGCCAGCTGTTGCAGTGTCAGAAGCGGGTGCACGCTATGCCTGCGAGTCCCAGTTCTGTTCTCAGGATGTATAGGATGGCTCCTCATTCTCCTTACGACCCTCTTCATCTTGTCCCTAAGTTGGTAGATCATCCTTCCCCTCGCGCGCTTGATTCGCGTGGCGCGTTTGTTGTGCACGTGCCCTCTGCTATATACGTGTGGATTGGGAAGGAGTGTGGCTCCGCAATGTGTTGCAATGCAAGATCAGCGGCTGCTCAGGTTGTTCGGTATGAGAGAGCAACGGGGGAGATTGTTAGTGTGGTTGAGGATGAAGAGCCGAAGGAGTTTTGGATTGCTCTTTCTACCAAGGAAGTGGTGGTGGAGATTATGGAGATTGATGTGGGGATTCGTCCCAGGAGAGTTGAGGAGTATGATTTAGATTATGGGATTTTTCATAAGGCGCTTGCTGGTGGGGTTGTTCCACCTTTTTCTTTGTCTAATGCTGGATCCGAAAATTGCCTTCCCGCTAGAGAAAATGGGTGGGGGAGATTGACTAGGAAGCTTGCTAGTGGTATCATGAAAGGCTTGTTTACATCCTCTAAGTGCTGTGAGTCTAGTGTGAACATCATTGAAGAGGGGAATCAACATATGAATGTTGATCCTCTTCCACCTTCTTCCAACAATGTGGGTGGTTCGCGGGGTTCCTTTGAGTGTTTTGGCTCGGAGAGGGGAAAGGATAATGTTCAAGTCAGGGATCAGTTTGTTGTCCCTAGTGTTGTTGGTTCATCAATGCCGCTGCCACCATCGCCTCATCATCGAGCATCCGATTCTTTTGCTTGTTTTCTAAGGAGCAGCCCCAAATTCAGTTCCAACTCCCCAACTCTGTCGCCCACCAGTTCGGATTATGCAAGTTCCTTTACATTTTCGCCTTCATCGACTGACTTGTCAATTGTGTCTTCTCGGCAGCTATCCCCTTCTGGTCTGGAATCAGCTGAACCCGCTCATGTGAAAGACGCATCTTCCTCAGAGTTTCGCTCCTTAGTTAAGAAAGAAGGTGAGACATTTCTGGCTAATCACACCTTGGTAGGAGCAAAGTCCAGTTTGCGGCGCAAAGGAACTTCCCTCTCCATTGCAGAGCGCAGAGGGAATAACCCCCCACCTCGCATGTTGCTACCCTCAGCCAGCGAATCATCCCGTGCCAGCAAGGTCCGGGTAAGATCCAGGTGCCAAAGGTTCTTCCATACAAATCAAAGAACAGTGCTGAACGAGTCAAGATTCCATTCTTCATCTACTTGGACTACTCTTCTATTTTAATACTGGCTATAAATTGAAGATCAGGACAGGACTGTACAAACAAGAAGCTAATTAAGTGGGAGAGAAAGGATCACATTGCTGAGATCATTCCACAACTCAAATGCCTTCTTTGATCATAGTGTCTGGGAAATGCTTTACGTGTTAAGCAGACTTTGCCTGCATACAGACCACATCAACCACGTGAGATTAAGATTCTAGCCATTATAGGAAGACGTAAATGAAAATCATCTTTTGCAAAAGGAGGAGAGGTGGAAATAACAATAACAATAAAGGAAGGAACCACCAAATACATAGTTTCCATTATTAAGTAAT
Coding sequences of Glyma.05g174000
>Glyma.05g174000.1 sequence-type=CDS polypeptide=Glyma.05g174000.1.p locus=Glyma.05g174000 ID=Glyma.05g174000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTAGGAGAAGAGAGTAACAACAACAACAACGACCGCGGCGGCGGTCACCGGAGAACAACACATTCCCGATCAGTTTCCTGGACCGACCGGTCTCCGGTTACCCGGAAACCGCCGCGTCCGCTTCAGCCTCTCGCCATCAACAAACGCAGCGTTATGGAGTGGCCGAGCGCCGGCTGCGACGATCTCGGCGATTGGTCTCTTCCACCGACCCCAAGAGGTTCCACCATAACACCAGATTCGGGTTCGGGTAAAGTATTTCAATTCAAGAAAGACTATTATGCGTTCTACGACAAGGAATGTTCGAGAATCGCGGAGCACGTGTACCTGGGGAGTGACACGGTGGCGAAGAGCCAGGAGCTGCTGCGGCGGCACGGAATCACGCACGTGCTCAATTGCGTCGGGTTCGTGTGCCCCGAGTATTTCAAAACAGACTTCGTCTACAAAACGCTCTGGCTGCGGGACTCACCCTCGGAGGACATCACCAGCATTCTCTACGACGTTTTCGATTACTTTGAGGATGTCCGCCAACAGGGCGGGCGCATGTTCGTCCACTGCTGCCAGGGCGTCTCGCGGTCGACCTCGCTGGTCATCGCCTATCTCATGTGGAGGGAAGGCCAGAGCTTCGAGGACGCGTTCCACTACGTCAAGAACGCGCGTGGCGTCACGAACCCCAACATGGGCTTCGCGTGCCAGCTGTTGCAGTGTCAGAAGCGGGTGCACGCTATGCCTGCGAGTCCCAGTTCTGTTCTCAGGATGTATAGGATGGCTCCTCATTCTCCTTACGACCCTCTTCATCTTGTCCCTAAGTTGGTAGATCATCCTTCCCCTCGCGCGCTTGATTCGCGTGGCGCGTTTGTTGTGCACGTGCCCTCTGCTATATACGTGTGGATTGGGAAGGAGTGTGGCTCCGCAATGTGTTGCAATGCAAGATCAGCGGCTGCTCAGGTTGTTCGGTATGAGAGAGCAACGGGGGAGATTGTTAGTGTGGTTGAGGATGAAGAGCCGAAGGAGTTTTGGATTGCTCTTTCTACCAAGGAAGTGGTGGTGGAGATTATGGAGATTGATGTGGGGATTCGTCCCAGGAGAGTTGAGGAGTATGATTTAGATTATGGGATTTTTCATAAGGCGCTTGCTGGTGGGGTTGTTCCACCTTTTTCTTTGTCTAATGCTGGATCCGAAAATTGCCTTCCCGCTAGAGAAAATGGGTGGGGGAGATTGACTAGGAAGCTTGCTAGTGGTATCATGAAAGGCTTGTTTACATCCTCTAAGTGCTGTGAGTCTAGTGTGAACATCATTGAAGAGGGGAATCAACATATGAATGTTGATCCTCTTCCACCTTCTTCCAACAATGTGGGTGGTTCGCGGGGTTCCTTTGAGTGTTTTGGCTCGGAGAGGGGAAAGGATAATGTTCAAGTCAGGGATCAGTTTGTTGTCCCTAGTGTTGTTGGTTCATCAATGCCGCTGCCACCATCGCCTCATCATCGAGCATCCGATTCTTTTGCTTGTTTTCTAAGGAGCAGCCCCAAATTCAGTTCCAACTCCCCAACTCTGTCGCCCACCAGTTCGGATTATGCAAGTTCCTTTACATTTTCGCCTTCATCGACTGACTTGTCAATTGTGTCTTCTCGGCAGCTATCCCCTTCTGGTCTGGAATCAGCTGAACCCGCTCATGTGAAAGACGCATCTTCCTCAGAGTTTCGCTCCTTAGTTAAGAAAGAAGGTGAGACATTTCTGGCTAATCACACCTTGGTAGGAGCAAAGTCCAGTTTGCGGCGCAAAGGAACTTCCCTCTCCATTGCAGAGCGCAGAGGGAATAACCCCCCACCTCGCATGTTGCTACCCTCAGCCAGCGAATCATCCCGTGCCAGCAAGGTCCGGGTAAGATCCAGGTGCCAAAGGTTCTTCCATACAAATCAAAGAACAGTGCTGAACGAGTCAAGATTCCATTCTTCATCTACTTGGACTACTCTTCTATTTTAA

>Glyma.05g174000.2 sequence-type=CDS polypeptide=Glyma.05g174000.2.p locus=Glyma.05g174000 ID=Glyma.05g174000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTAGGAGAAGAGAGTAACAACAACAACAACGACCGCGGCGGCGGTCACCGGAGAACAACACATTCCCGATCAGTTTCCTGGACCGACCGGTCTCCGGTTACCCGGAAACCGCCGCGTCCGCTTCAGCCTCTCGCCATCAACAAACGCAGCGTTATGGAGTGGCCGAGCGCCGGCTGCGACGATCTCGGCGATTGGTCTCTTCCACCGACCCCAAGAGGTTCCACCATAACACCAGATTCGGGTTCGGGTAAAGTATTTCAATTCAAGAAAGACTATTATGCGTTCTACGACAAGGAATGTTCGAGAATCGCGGAGCACGTGTACCTGGGGAGTGACACGGTGGCGAAGAGCCAGGAGCTGCTGCGGCGGCACGGAATCACGCACGTGCTCAATTGCGTCGGGTTCGTGTGCCCCGAGTATTTCAAAACAGACTTCGTCTACAAAACGCTCTGGCTGCGGGACTCACCCTCGGAGGACATCACCAGCATTCTCTACGACGTTTTCGATTACTTTGAGGATGTCCGCCAACAGGGCGGGCGCATGTTCGTCCACTGCTGCCAGGGCGTCTCGCGGTCGACCTCGCTGGTCATCGCCTATCTCATGTGGAGGGAAGGCCAGAGCTTCGAGGACGCGTTCCACTACGTCAAGAACGCGCGTGGCGTCACGAACCCCAACATGGGCTTCGCGTGCCAGCTGTTGCAGTGTCAGAAGCGGGTGCACGCTATGCCTGCGAGTCCCAGTTCTGTTCTCAGGATGTATAGGATGGCTCCTCATTCTCCTTACGACCCTCTTCATCTTGTCCCTAAGTTGGTAGATCATCCTTCCCCTCGCGCGCTTGATTCGCGTGGCGCGTTTGTTGTGCACGTGCCCTCTGCTATATACGTGTGGATTGGGAAGGAGTGTGGCTCCGCAATGTGTTGCAATGCAAGATCAGCGGCTGCTCAGGTTGTTCGGTATGAGAGAGCAACGGGGGAGATTGTTAGTGTGGTTGAGGATGAAGAGCCGAAGGAGTTTTGGATTGCTCTTTCTACCAAGGAAGTGGTGGTGGAGATTATGGAGATTGATGTGGGGATTCGTCCCAGGAGAGTTGAGGAGTATGATTTAGATTATGGGATTTTTCATAAGGCGCTTGCTGGTGGGGTTGTTCCACCTTTTTCTTTGTCTAATGCTGGATCCGAAAATTGCCTTCCCGCTAGAGAAAATGGGTGGGGGAGATTGACTAGGAAGCTTGCTAGTGGTATCATGAAAGGCTTGTTTACATCCTCTAAGTGCTGTGAGTCTAGTGTGAACATCATTGAAGAGGGGAATCAACATATGAATGTTGATCCTCTTCCACCTTCTTCCAACAATGTGGGTGGTTCGCGGGGTTCCTTTGAGTGTTTTGGCTCGGAGAGGGGAAAGGATAATGTTCAAGTCAGGGATCAGTTTGTTGTCCCTAGTGTTGTTGGTTCATCAATGCCGCTGCCACCATCGCCTCATCATCGAGCATCCGATTCTTTTGCTTGTTTTCTAAGGAGCAGCCCCAAATTCAGTTCCAACTCCCCAACTCTGTCGCCCACCAGTTCGGATTATGCAAGTTCCTTTACATTTTCGCCTTCATCGACTGACTTGTCAATTGTGTCTTCTCGGCAGCTATCCCCTTCTGGTCTGGAATCAGCTGAACCCGCTCATGTGAAAGACGCATCTTCCTCAGAGTTTCGCTCCTTAGTTAAGAAAGAAGGTGAGACATTTCTGGCTAATCACACCTTGGTAGGAGCAAAGTCCAGTTTGCGGCGCAAAGGAACTTCCCTCTCCATTGCAGAGCGCAGAGGGAATAACCCCCCACCTCGCATGTTGCTACCCTCAGCCAGCGAATCATCCCGTGCCAGCAAGGTCCGGGTAAGATCCAGGTGCCAAAGGTTCTTCCATACAAATCAAAGAACAGTGCTGAACGAGTCAAGATTCCATTCTTCATCTACTTGGACTACTCTTCTATTTTAA
Predicted protein sequences of Glyma.05g174000
>Glyma.05g174000.1.p sequence-type=predicted peptide transcript=Glyma.05g174000.1 locus=Glyma.05g174000 ID=Glyma.05g174000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLGEESNNNNNDRGGGHRRTTHSRSVSWTDRSPVTRKPPRPLQPLAINKRSVMEWPSAGCDDLGDWSLPPTPRGSTITPDSGSGKVFQFKKDYYAFYDKECSRIAEHVYLGSDTVAKSQELLRRHGITHVLNCVGFVCPEYFKTDFVYKTLWLRDSPSEDITSILYDVFDYFEDVRQQGGRMFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFHYVKNARGVTNPNMGFACQLLQCQKRVHAMPASPSSVLRMYRMAPHSPYDPLHLVPKLVDHPSPRALDSRGAFVVHVPSAIYVWIGKECGSAMCCNARSAAAQVVRYERATGEIVSVVEDEEPKEFWIALSTKEVVVEIMEIDVGIRPRRVEEYDLDYGIFHKALAGGVVPPFSLSNAGSENCLPARENGWGRLTRKLASGIMKGLFTSSKCCESSVNIIEEGNQHMNVDPLPPSSNNVGGSRGSFECFGSERGKDNVQVRDQFVVPSVVGSSMPLPPSPHHRASDSFACFLRSSPKFSSNSPTLSPTSSDYASSFTFSPSSTDLSIVSSRQLSPSGLESAEPAHVKDASSSEFRSLVKKEGETFLANHTLVGAKSSLRRKGTSLSIAERRGNNPPPRMLLPSASESSRASKVRVRSRCQRFFHTNQRTVLNESRFHSSSTWTTLLF*

>Glyma.05g174000.2.p sequence-type=predicted peptide transcript=Glyma.05g174000.2 locus=Glyma.05g174000 ID=Glyma.05g174000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLGEESNNNNNDRGGGHRRTTHSRSVSWTDRSPVTRKPPRPLQPLAINKRSVMEWPSAGCDDLGDWSLPPTPRGSTITPDSGSGKVFQFKKDYYAFYDKECSRIAEHVYLGSDTVAKSQELLRRHGITHVLNCVGFVCPEYFKTDFVYKTLWLRDSPSEDITSILYDVFDYFEDVRQQGGRMFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFHYVKNARGVTNPNMGFACQLLQCQKRVHAMPASPSSVLRMYRMAPHSPYDPLHLVPKLVDHPSPRALDSRGAFVVHVPSAIYVWIGKECGSAMCCNARSAAAQVVRYERATGEIVSVVEDEEPKEFWIALSTKEVVVEIMEIDVGIRPRRVEEYDLDYGIFHKALAGGVVPPFSLSNAGSENCLPARENGWGRLTRKLASGIMKGLFTSSKCCESSVNIIEEGNQHMNVDPLPPSSNNVGGSRGSFECFGSERGKDNVQVRDQFVVPSVVGSSMPLPPSPHHRASDSFACFLRSSPKFSSNSPTLSPTSSDYASSFTFSPSSTDLSIVSSRQLSPSGLESAEPAHVKDASSSEFRSLVKKEGETFLANHTLVGAKSSLRRKGTSLSIAERRGNNPPPRMLLPSASESSRASKVRVRSRCQRFFHTNQRTVLNESRFHSSSTWTTLLF*






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