Glyma.05g172600

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Report for Sequence Feature Glyma.05g172600

Feature Type:	gene_model
Chromosome:	Gm05
Start:	36249908
stop:	36254636
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.05g172600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G13180.1	AT	Actin-like ATPase superfamily protein	JGI	N/A	IEA
GO:0000902	GO-bp	cell morphogenesis	EnsemblGenomes	N/A	IEA
GO:0007015	GO-bp	actin filament organization	EnsemblGenomes	N/A	IEA
GO:0009825	GO-bp	multidimensional cell growth	EnsemblGenomes	N/A	IEA
GO:0010090	GO-bp	trichome morphogenesis	EnsemblGenomes	N/A	IEA
GO:0034314	GO-bp	Arp2/3 complex-mediated actin nucleation	EnsemblGenomes	N/A	IEA
GO:0005829	GO-cc	cytosol	EnsemblGenomes	N/A	IEA
GO:0005885	GO-cc	Arp2/3 protein complex	EnsemblGenomes	N/A	IEA
GO:0005524	GO-mf	ATP binding	EnsemblGenomes	N/A	IEA
KOG0678	KOG	Actin-related protein Arp2/3 complex, subunit Arp3	JGI	N/A	IEA
PTHR11937	Panther	ACTIN	JGI	N/A	IEA
PTHR11937:SF31	Panther	ACTIN-RELATED PROTEIN 3	JGI	N/A	IEA
PF00022	PFAM	Actin	JGI	N/A	IEA

Expression Patterns of Glyma.05g172600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g172600 not represented in the dataset	Glyma.05g172600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.05g172600 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma05g30630	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.05g172600

Limit To All Plant Sequences

>Glyma.05g172600.1 sequence-type=CDS polypeptide=Glyma.05g172600.1.p locus=Glyma.05g172600 ID=Glyma.05g172600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCCCTCTACTTCTCGTCCAGCTGTAGTCATCGATAATGGCTCCGGTTATACTAAGATGGGGTTTGCTGGTAATGTTGAGCCATGTTTTAATGTTCCGACAGTGGTTGCAATTAACGAGTCCTTTCTTAATCAATCGAGGAATTCCTCTAAAGGCAATTGGGTTGCCCAGCACAATGCTGGCGTAATGGCAGATCTTGATTTCTTCATTGGGGATGAGGCCCTCTCCAAATCTCGATCTAGCAGCACTTATAATCTCAGCTACCCAATTCAGCATGGCCAGGTTGAGAATTGGGATGCCATGGAGCGCTTCTGGCAGCAGTGCATATTCAACTATTTGAGGTGTGATCCAGAGGATCACTATTTTCTCTTGACGGAGAGTCCATTGACTTCGCCAGAGAGTCGCGAGTATACTGGGGAAATCATGTTTGAGACGTTTAACGTACCTGGACTTTACATTGGTGTGAATTCTGTGCTTGCTCTTGCAGCTGGTTACACAACATCTAAGTGCGAGATGACTGGAGTTGTAGTGGATGTTGGAGATGGGGCTGCTCATGTTGTACCTGTTGCAGACGGCTATGTTATTGGCAGTAGCATCAAATCGATTCCCATTTCTGGAAAGGATATTACTCTTTTTGTGCAGCAGCTTATGCGGGAAAGAGGAGAAAATGTACCACCAGAAGACTCTTTTGAAGTGGCACGGAAAGTGAAGGAAATGTATTGCTACACCTGCTCTGACATTGTGAAGGAATTTAATAAGCATGACAAAGAGCCAGCCAAGTATATCAAGCACTGGAGAGGTATTAAACCAAAGACGGGGGCACCATATTCCTGTGATATTGGCTATGAACGATTTCTTGGCCCTGAGATTTTCTTTAATCCTGAGATATATGGCAGTGACTTTACCACCCCTTTGCCAGTTGTAATAGACAAGTGCATTCAGTCTGCGCCAATTGACACAAGGAGATCATTATACAAGAATGTAGTGTTGTCTGGAGGTTCAACCATGTTCAAGGATTTTCACAGGAGGTTGCAACGTGATCTAAAAAAAATAGTGGATGCTCGTGTCCTTTTATCTGAAGCGCGCTTGAATGGGGAGATAAAATCGCAGCCAGTGGAGGTAAATGTACTCAGCAATCCAATCCAGAGATATGCAGTTTGGTTTGGAGGATCAGTGCTTGCGTCAACACCTGATTTTTTTACGGCTTGTCATACAAAGGCAGAATATGAGGAGTATGGAGCAAGCATTTGCCGGACAAATCCTGTTTTCAAGGGAATGTATTAA

Predicted protein sequences of Glyma.05g172600

Limit To All Plant Sequences

>Glyma.05g172600.1.p sequence-type=predicted peptide transcript=Glyma.05g172600.1 locus=Glyma.05g172600 ID=Glyma.05g172600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDPSTSRPAVVIDNGSGYTKMGFAGNVEPCFNVPTVVAINESFLNQSRNSSKGNWVAQHNAGVMADLDFFIGDEALSKSRSSSTYNLSYPIQHGQVENWDAMERFWQQCIFNYLRCDPEDHYFLLTESPLTSPESREYTGEIMFETFNVPGLYIGVNSVLALAAGYTTSKCEMTGVVVDVGDGAAHVVPVADGYVIGSSIKSIPISGKDITLFVQQLMRERGENVPPEDSFEVARKVKEMYCYTCSDIVKEFNKHDKEPAKYIKHWRGIKPKTGAPYSCDIGYERFLGPEIFFNPEIYGSDFTTPLPVVIDKCIQSAPIDTRRSLYKNVVLSGGSTMFKDFHRRLQRDLKKIVDARVLLSEARLNGEIKSQPVEVNVLSNPIQRYAVWFGGSVLASTPDFFTACHTKAEYEEYGASICRTNPVFKGMY*

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