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Report for Sequence Feature Glyma.05g171900

Feature Type:gene_model
Chromosome:Gm05
Start:36215218
stop:36217854
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G54830.1AT DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
KOG4731 KOG Protein predicted to be involved in spindle matrix formation, contains DM13, DoH, and DOMON domains JGI N/AIEA
PTHR23130Panther FAMILY NOT NAMED JGI N/AIEA
PTHR23130:SF18Panther JGI N/AIEA
PF03188PFAM Eukaryotic cytochrome b561 JGI N/AIEA
PF03351PFAM DOMON domain JGI N/AIEA
PF10517PFAM Electron transfer DM13 JGI N/AIEA

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g171900 not represented in the dataset

Glyma.05g171900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE


View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.



View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Corresponding NameAnnotation VersionEvidenceComments
Glyma05g30560 Wm82.a1.v1.1IGC As supplied by JGI


>Glyma.05g171900.1 sequence-type=CDS polypeptide=Glyma.05g171900.1.p locus=Glyma.05g171900 ID=Glyma.05g171900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTTCGCAGATCCCTCATCATCATCCTACACTTGTCGTTGTTGTCGTTCGGATATGCGGATCCCGCTCCCAATTGCACTCGCCTCAGCTCCGTCGTCAATTCGGAGTCGGAGTTCGAAATGGTTCAACACCAACTCCGAGGATCCCTGAAAATCAGGGACGATTGCTCCTTTAGGGTTTCCCAATTCGACATGCTTCCCGGTTCCGACGTCCACTGGTGGGGTGCGCAGGCTTCCGATTTCGATAACCTCACCGCCGGATTCATTGTTTCCAACTACGGATTGAACGGAACCTACAACAACTCCACCTTCGATGTGCATTTGTTGAGCAATGTTTCCTGGAGCATGATCAACGTCCTCGCCGTCTGGGATCGTGCCACCGCCTCCGATTTCGGCCACGTCGTGCTCCGCAAGGACGCCCCGGCGTCGCCTCCTCCTCCGACGGTGTTCGAGAATTGCAAGGTTTTGTCGAAGAATTTCAGGTTGAGGTGGAGTTTGAATGTGTCCGAGGATTCTCTTGAAATTGGGTTGGAGGCCGCGACTGGGATCACCAATTACATGGCTTTTGGGTGGGCTAATTCCAGTGCTCAAGATTCTGATCTCATGATTGGTGCTGATGTTGTCGTTGCAGGGTTTAAGGAAGATGGTATGCCCTTTGTGGATGATTTTTTCATTACTAAGTATAGTGAGTGTGTGAGAAATAGTGATGGAGTTGCTCAAGGGGTATGTCCTGATTCCTTTTATGAAGGCCCTGATGGGGTGGGTTTAGTCAACAATTCAATGTTGGTTTATGGCCATAGGAAGGATGGGGTGACCTTTGTCAGATACCGCAGGCATTTGACTAAGGTCGATGGAAAGTATGATCATCCCGTGAACCATTCAGCGAATATGAAGGTTATTTGGGCTTTGGGGCGTATCAAGCCTCCCGATTCTATTAATCCTTACTATCTTCCTCAGAATCATGGGGCCGTGAATTATGGCCATTTGGTTTTGAATGTCTCGGAGCATGTGAATGAGTGTACAGGTCCCTTGGATGCTGAAGACAAAGAAGATCAAGGTCTCATCACTGCAGATGCAAATGTTCCCTTGGTGGTTTCTTCTGCTCCGGCAATGCATTACCCCAACCCTCCAAATCCTGAAAAGGTTCTTTATATCAACAAAAAGGAAGCTCCTGTCTTGAGAGTGGAAAGAGGGGTGCCGGTCAAGTTTTCGATCCAAGCCGGGCACGATGTTGCACTTTATATTACTTCGGATCCGCTTGGTGGAAATGCTACCACGAGAAATCTGACTGAGACTATTTATGCTGGAGGTCCAGAGGCCCACGGAGTTCAAGCCAGTCCTACAGAATTAGTTTGGGCTCCTGACAGGAACACTCCTGATCACGTCTACTATCATTCCTTGTTCGACCAGAAGATGGGTTGGAAGGTCGAGGTGGTTGATGGGGGTCTATCGGACATGTATAATAACAGTGTCATTTTGGATGATCAACAGGTTACCTTCTTTTGGACATTGTCAAAGGATTCCATATCTATTGCAGCTCGTGGCGAGAAAAAAAGTGGTTATATTGCCATAGGGTTTGGAAGTGGAATGGTGAACAGCTATGTGTATGTGGGTTGGATTGATGATACTGGTGTGGGACATGTAAACACTTATTGGATTGATGGAAAGGATGCTTCAAGCATACACGGCACGCAGGAAAATTTGACACATGTGAGATGCAAAACAGAAAATGGCATCATTACTTTTGAGTTTACTCGTCCCTTGGACCCGTCTTGTAGGCGGGAAAAGAGGGTAGAATGTAAAAATATCGTTGATCCCACAACTCCTCTCAAAGTTGTTTGGGCAATGGGTGCTAAATGGACTGATGATCATCTTACTGACAGGAATATGCATTCTAGTACAAGTAATAGGGCTATTCTTGTACACCTGATGCGTGGTTCAGCAGAGGCGGAGCAGGATTTACTTCCTGTTTTGGCTGTGCATGGATTTATGATGTTTGTTGCATGGGGTATCCTGTTTCCTGGAGGGATATTGGCAGCCAGGTACTTAAAACATCTCAAGGGCGATGGATGGTACCGGATTCATGTTTACTTGCAATACTCAGGGTTAGTAATTGTTCTGCTTGCCCTTCTTTTTGCTGTGGCTGAGCTTAGGGGATTTTATTTCAGCTCAACTCATGTTAAATTTGGATTTGCTACTATATTGTTGGCTTGCATACAGCCAGCAAATGCTTTCCTAAGGCCTCCAAAACCAGCCAATGGGGAGCAGGCATCCTCCAAGAGGGTTATTTGGGAGTGTTTTCACACAATTGTTGGTAGATGTGCCATTGTTGTTGGCATTGCTGCACTTTTTACTGGGATGAAGCATCTAGGAGACAGATACGATGTGGAAAATGTCCATGGACTCAGATGGGCTATGGCAATTTGGTTTTTAATTGGTGCATTGATTGTTATTTATTTGGAATACCATGAAAGGCAGCGAATAGGGCGGCAGATATCTGGAAGAGGCAATTGGGTGCTTGGTAATCTTGAGGAAGATGATTCAGTTGATCTCTTGAGGCCAACCAGAACAACTGCAGATAAAGAGTTGCAACACTCTGCGAGAATGGAAGTCCAATTAGAACCTTTGAACAGATAA

>Glyma.05g171900.1.p sequence-type=predicted peptide transcript=Glyma.05g171900.1 locus=Glyma.05g171900 ID=Glyma.05g171900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLRRSLIIILHLSLLSFGYADPAPNCTRLSSVVNSESEFEMVQHQLRGSLKIRDDCSFRVSQFDMLPGSDVHWWGAQASDFDNLTAGFIVSNYGLNGTYNNSTFDVHLLSNVSWSMINVLAVWDRATASDFGHVVLRKDAPASPPPPTVFENCKVLSKNFRLRWSLNVSEDSLEIGLEAATGITNYMAFGWANSSAQDSDLMIGADVVVAGFKEDGMPFVDDFFITKYSECVRNSDGVAQGVCPDSFYEGPDGVGLVNNSMLVYGHRKDGVTFVRYRRHLTKVDGKYDHPVNHSANMKVIWALGRIKPPDSINPYYLPQNHGAVNYGHLVLNVSEHVNECTGPLDAEDKEDQGLITADANVPLVVSSAPAMHYPNPPNPEKVLYINKKEAPVLRVERGVPVKFSIQAGHDVALYITSDPLGGNATTRNLTETIYAGGPEAHGVQASPTELVWAPDRNTPDHVYYHSLFDQKMGWKVEVVDGGLSDMYNNSVILDDQQVTFFWTLSKDSISIAARGEKKSGYIAIGFGSGMVNSYVYVGWIDDTGVGHVNTYWIDGKDASSIHGTQENLTHVRCKTENGIITFEFTRPLDPSCRREKRVECKNIVDPTTPLKVVWAMGAKWTDDHLTDRNMHSSTSNRAILVHLMRGSAEAEQDLLPVLAVHGFMMFVAWGILFPGGILAARYLKHLKGDGWYRIHVYLQYSGLVIVLLALLFAVAELRGFYFSSTHVKFGFATILLACIQPANAFLRPPKPANGEQASSKRVIWECFHTIVGRCAIVVGIAALFTGMKHLGDRYDVENVHGLRWAMAIWFLIGALIVIYLEYHERQRIGRQISGRGNWVLGNLEEDDSVDLLRPTRTTADKELQHSARMEVQLEPLNR*







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