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Report for Sequence Feature Glyma.05g171400

Feature Type:gene_model
Chromosome:Gm05
Start:36157731
stop:36169032
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g171400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G05420.1AT damaged DNA binding protein 1A JGI N/AIEA
GO:0006281GO-bp DNA repair EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
KOG1897 KOG Damage-specific DNA binding complex, subunit DDB1 JGI N/AIEA
PTHR10644Panther DNA REPAIR/RNA PROCESSING CPSF FAMILY JGI N/AIEA
PTHR10644:SF3Panther DNA DAMAGE-BINDING PROTEIN 1 JGI N/AIEA
PF03178PFAM CPSF A subunit region JGI N/AIEA

Expression Patterns of Glyma.05g171400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.05g171400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g13680 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05g171400
>Glyma.05g171400.1 sequence-type=CDS polypeptide=Glyma.05g171400.1.p locus=Glyma.05g171400 ID=Glyma.05g171400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACTATATGGAACTACGTCGTCACGGCTCACAAGCCCACCAACGTCACCCACTCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATCATCGCGAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAGCCTATGTTGGATGTGCCGATATATGGAAGAATTGCAACACTTGAACTCTTCCGCCCTCATGGTGAAGCGCAGGATTATCTTTTTATTGCAACTGAAAGATACAAATTCTGTGTTCTTCAATGGGATTCCGAGACTGGTGAGCTTGTTACACGGGCAATGGGGGATGTTTCTGACCGGATAGGACGTCCCACAGATAATGGTCAGATTGGCATTATTGATCCTGATTGTAGGTTGATTGGACTCCACTTGTATGATGGTTTGTTTAAAGTTATTCCCTTCGACAATAAAGGACAGCTCAAGGAAGCATTTAATATAAGGCTTGAGGAGCTCCAAGTTTTGGATATCAAATTTCTTTATGGTTGTTCAAAGCCAACTATTGTGGTTCTTTACCAGGATAATAAAGATGCTCGTCATGTTAAAACATATGAGGTTGCACTGAAGGATAAAGATTTTGTTGAAGGTCCATGGTCCCAGAACAATCTCGATAATGGGGCTGATTTATTGATACCAGTTCCCCCACCTCTTTGTGGTGTGCTTATTATTGGGGAAGAAACCATAGTGTACTGCAGTGCTAATGCTTTCAAGGCTATCCCAATCAGACCTTCAATTACAAAAGCCTATGGAAGAGTTGATCCTGACGGTTCTCGATATTTACTTGGTGACCATACAGGGTTGGTTAGCCTACTTGTAATAATCCATGAGAAAGAAAAGGTTACGGGACTCAAAATTGAGCCCCTTGGGGAGACTTCCATTGCATCTACAATATCATACCTTGATAATGCATTCGTCTACGTTGGTTCAAGTTATGGAGATTCACAGCTAATAAAACTAAATCTACAGCCTGATGCAAAAGGTTCTTATGTGGAAGTATTGGAAAGGTATGTCAATTTGGGGCCTATTGTTGACTTCTGTGTGGTAGACCTCGAAAGGCAGGGCCAAGGTCAGGTTGTAACTTGCTCTGGAGCTTACAAGGATGGTTCTCTTCGCGTCGTTCGTAATGGAATAGGAATTAATGAACAGGCATCGGTAGAACTTCAAGGTATCAAAGGAATGTGGTCACTGAGATCCTCAACAGATGATCCTTTTGATACTTTTCTGGTTGTGAGTTTTATAAGTGAAACAAGAATCTTAGCAATGAATCTTGAGGATGAGCTGGAAGAAACTGAGATTGAGGGATTCTGTTCTCAAGTGCAGACTTTATTTTGCCATGATGCAGTTCATAATCAACTTGTTCAAGTTACTTCAAGCTCTGTCAGACTGGTCAGCTCCACAACTAGAGATCTTCGGAATGAATGGCATGCACCATCAGGCTATTCAGTAAATGTAGCTACGGCAAACGCTACCCAGACCATAAGTGTTAGAATTTTTTCTCTTCCTGGATCTGAGTCTCATCACAAAGGAACAATAAGGAACAATAGGAGGGAGATCATTCTGTCTTCTTGTGCCTTTGAAGGGATATCGTACTTGCTATGTGCCCTCGGTGATGGCCATCTCTTAAACTTTATGTTGAATACTAGTACCGGTGAATTAACAGATAGGAAAAAGGTATCTCTAGGGACACAACCTATAACACTACGGACTTTCTCCTCCAAAAATACTACTCATGTATTTGCTGCATCTGATCGGCCAACTGTAATTTATAGTAGTAACAAAAAATTACTTTATAGTAATGTGAATCTGAAGGAAGTGAGTCACATGTGTCCTTTCAATTCTGCTGCTTTTCCAGACAGTTTGGCAATTGCAAAAGAAGGTGAGCTTACTATTGGCACTATTGATGATATACAAAAACTTCATATTCGCTCTATTCCGCTGGGGGAGCACGCACGACGTATCTGCCACCAGGAGCAATCTAGGACTTTTGCTATTTGTAGTTTGAAATACAACCCAGCTAGTGGTGAAGACTCAGAAATGCACTTTGTCCGCTTGCTGGATGACCAGACTTTTGAGTTCATATCAACTTATTCTCTTGACACTTATGAGTATGGTTGCTTCATAATTAGCTGCTCCTTCTCAGATGACAATAATGTGTATTACTGTGTTGGAACTGCATATGTACTGCCAGAGGAAATGGAACCAACCAAAGGAAGAATTCTTGTTTTTGCTGTTGAAGATGGAAAACTACAGCTAATTGCCGAGAAAGAGACAAAAGGAGCTGTTTATTGCTTGAATGCATTTAATGGTAAATTGCTTGCTGCTGTTGGTCAGAAAATTCAGCTGTATAAGTGGGTGCTCCGGGATGATGGTACCCATGAATTGCAGTCTGAATGTGGACATCATGGGCACATCCTAGCACTTTATGTGCAAACTAGAGGAGATTTTATTGTAGTTGGTGATCTGATGAAGTCGATTTCCTTGTTAATCTACAAGCATGAAGAAGGTGCTATTGAGGAAAGAGCTCGTGACTACAATGCAAATTGGATGTCAGCCGTTGAAATTGTTGATGATGACATATATCTAGGTGCAGAAAACAGTTTTAATCTGTTCACAGTTCGGAAAAATAGTGAAGGTGCCACTGATGAAGAGCGAGGTCGTCTTGAAGTGGTTGGTGAGTATCACCTTGGAGAATTTGTCAATCGGTTCCGGCATGGCTCCCTTGTTATGCGCTTGCCAGATTCTGATGTGGGCCAGATTCCAACTGTTATCTTTGGCACCATTAATGGTGTTATTGGAGTAATTGCTTCTCTTCCACATGAGCAATATGTTTTCTTGGAGAAACTTCAGTCAAATTTGAGGAAGGTAATTAAAGGCGTTGGAGGGCTCAGCCATGAGCAATGGAGATCATTTAACAACGAGAAGAAAACTGTTGAAGCTAGAAACTTTTTAGATGGAGATTTGATCGAATCATTTCTTGATCTTAACCGAAGTAAGATGGATGAAATTTCCAAGGCATTGGATGTTTCAGTAGAGGAGTTATGCAAGAGAGTAGAAGAGTTGACAAGGTTGCACTGA
Predicted protein sequences of Glyma.05g171400
>Glyma.05g171400.1.p sequence-type=predicted peptide transcript=Glyma.05g171400.1 locus=Glyma.05g171400 ID=Glyma.05g171400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTIWNYVVTAHKPTNVTHSCVGNFTSPQDLNLIIAKCTRIEIHLLSPQGLQPMLDVPIYGRIATLELFRPHGEAQDYLFIATERYKFCVLQWDSETGELVTRAMGDVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCSKPTIVVLYQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCSANAFKAIPIRPSITKAYGRVDPDGSRYLLGDHTGLVSLLVIIHEKEKVTGLKIEPLGETSIASTISYLDNAFVYVGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRVVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQVQTLFCHDAVHNQLVQVTSSSVRLVSSTTRDLRNEWHAPSGYSVNVATANATQTISVRIFSLPGSESHHKGTIRNNRREIILSSCAFEGISYLLCALGDGHLLNFMLNTSTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHARRICHQEQSRTFAICSLKYNPASGEDSEMHFVRLLDDQTFEFISTYSLDTYEYGCFIISCSFSDDNNVYYCVGTAYVLPEEMEPTKGRILVFAVEDGKLQLIAEKETKGAVYCLNAFNGKLLAAVGQKIQLYKWVLRDDGTHELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEIVDDDIYLGAENSFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTINGVIGVIASLPHEQYVFLEKLQSNLRKVIKGVGGLSHEQWRSFNNEKKTVEARNFLDGDLIESFLDLNRSKMDEISKALDVSVEELCKRVEELTRLH*






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