Report for Sequence Feature Glyma.05g164300
Feature Type: gene_model
Chromosome: Gm05
Start: 35518874
stop: 35520215
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.05g164300
Expression Patterns of Glyma.05g164300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.05g164300
Paralog Evidence Comments
Glyma.08g121700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.05g164300 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma05g29720 Wm82.a1.v1.1 IGC As supplied by JGI
Transcripts of Glyma.05g164300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.05g164300.2 sequence-type=transcript locus=Glyma.05g164300 ID=Glyma.05g164300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCTTATGTTGTTGAGAAACTATGCACTATGCAGGTCCAGAATTAAAACTACCAGCACACTTTTCACCCTTGTTCTTCCCAATGGGAAATGCATCCACTGGATTCTTTGTCACATTTGCTTTGCTTGCTGGAGTGGTTGGTGCTGCATCAGCAATTTCAGGAATCAATCATATCCAGTCATGGACTGCTGAGAGCTTGCCATCTGCAGCTTCAGTTGCTACAATGGCTTGGACTCTTACACTCCTGGCCATGGGCTTTGCCTGGAAAGAGATTGAGCTTCGTATCAGAAATGCACGCCTGAAAACCATGGAGGCTTTTATAATTATACTTTCAGCTACACAGCTTTTCTACATAGTTGCTATTCACAGTGCTGCTGCGTATAGAAGAAAAACTTGAAGGTTGAAGGAATTTTTTTTTTGTTGGCCAAGAAGGATTGTATTGGTGTGCTTGTATTTTTCTCTCCCTCTCTTGCTTTTTTTTTTTCTCTTTGGTTTATGTATTTTTTCTGTCGGTCCAATCAAGACTTTTAATTCATATAAGTTAAAGGAGAATTAGCATTGTGGTGTGATTTGAATGATTGGAATTTGGATTTGTATGAATCAAGAATGTCATTTACAAGAGCAATAAAGGAGAACACTATCTTTACTTTTC
Coding sequences of Glyma.05g164300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.05g164300.1 sequence-type=CDS polypeptide=Glyma.05g164300.1.p locus=Glyma.05g164300 ID=Glyma.05g164300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTAAGGAGCAAATGAAGCCTATTGCCACTCTTCTTTTGGGGCTGAACTTCTGCATGTATGCCATAGTTTTGGGCATTGGTGGATGGGCCATGAACAGAGCAATAGATCATGGTTTTATTATAGGTCCAGAATTAAAACTACCAGCACACTTTTCACCCTTGTTCTTCCCAATGGGAAATGCATCCACTGGATTCTTTGTCACATTTGCTTTGCTTGCTGGAGTGGTTGGTGCTGCATCAGCAATTTCAGGAATCAATCATATCCAGTCATGGACTGCTGAGAGCTTGCCATCTGCAGCTTCAGTTGCTACAATGGCTTGGACTCTTACACTCCTGGCCATGGGCTTTGCCTGGAAAGAGATTGAGCTTCGTATCAGAAATGCACGCCTGAAAACCATGGAGGCTTTTATAATTATACTTTCAGCTACACAGCTTTTCTACATAGTTGCTATTCACAGTGCTGCTGCGTATAGAAGAAAAACTTGA
>Glyma.05g164300.2 sequence-type=CDS polypeptide=Glyma.05g164300.2.p locus=Glyma.05g164300 ID=Glyma.05g164300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCACTATGCAGGTCCAGAATTAAAACTACCAGCACACTTTTCACCCTTGTTCTTCCCAATGGGAAATGCATCCACTGGATTCTTTGTCACATTTGCTTTGCTTGCTGGAGTGGTTGGTGCTGCATCAGCAATTTCAGGAATCAATCATATCCAGTCATGGACTGCTGAGAGCTTGCCATCTGCAGCTTCAGTTGCTACAATGGCTTGGACTCTTACACTCCTGGCCATGGGCTTTGCCTGGAAAGAGATTGAGCTTCGTATCAGAAATGCACGCCTGAAAACCATGGAGGCTTTTATAATTATACTTTCAGCTACACAGCTTTTCTACATAGTTGCTATTCACAGTGCTGCTGCGTATAGAAGAAAAACTTGA
Predicted protein sequences of Glyma.05g164300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.05g164300.1.p sequence-type=predicted peptide transcript=Glyma.05g164300.1 locus=Glyma.05g164300 ID=Glyma.05g164300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAKEQMKPIATLLLGLNFCMYAIVLGIGGWAMNRAIDHGFIIGPELKLPAHFSPLFFPMGNASTGFFVTFALLAGVVGAASAISGINHIQSWTAESLPSAASVATMAWTLTLLAMGFAWKEIELRIRNARLKTMEAFIIILSATQLFYIVAIHSAAAYRRKT*
>Glyma.05g164300.2.p sequence-type=predicted peptide transcript=Glyma.05g164300.2 locus=Glyma.05g164300 ID=Glyma.05g164300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MHYAGPELKLPAHFSPLFFPMGNASTGFFVTFALLAGVVGAASAISGINHIQSWTAESLPSAASVATMAWTLTLLAMGFAWKEIELRIRNARLKTMEAFIIILSATQLFYIVAIHSAAAYRRKT*