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Report for Sequence Feature Glyma.05g156300

Feature Type:gene_model
Chromosome:Gm05
Start:34881112
stop:34887058
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g156300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G25650.1AT ACD1-like JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0010277GO-mf chlorophyllide a oxygenase [overall] activity EnsemblGenomesN/AIEA
GO:0010277GO-mf chlorophyllide a oxygenase [overall] activity JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
GO:0051537GO-mf 2 iron, 2 sulfur cluster binding EnsemblGenomesN/AIEA
GO:0051537GO-mf 2 iron, 2 sulfur cluster binding JGI N/AIEA
PTHR21266Panther IRON-SULFUR DOMAIN CONTAINING PROTEIN JGI N/AIEA
PTHR21266:SF3Panther JGI N/AIEA
PF00355PFAM Rieske [2Fe-2S] domain JGI N/AIEA
PF08417PFAM Pheophorbide a oxygenase JGI N/AIEA
PWY-5098SoyCyc9 chlorophyll a degradation I Plant Metabolic Network ISS
PWY-6927SoyCyc9 chlorophyll a degradation II Plant Metabolic Network ISS
GN7V-53106SoyCyc9-rxn pheophorbide a oxygenase Plant Metabolic Network ISS

Expression Patterns of Glyma.05g156300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g156300
ParalogEvidenceComments
Glyma.08g114400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g156300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g28900 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05g156300
>Glyma.05g156300.1 sequence-type=CDS polypeptide=Glyma.05g156300.1.p locus=Glyma.05g156300 ID=Glyma.05g156300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGCTGTGTGTGCTTTTTCTGTTGGCACACTTCACATCCCAACAGCACATGAAACATCAAACTCCTTTAGGAAATCCATATTCTTGAGCAACCAAGTGGCTTCACCAGTTTCATTGGTTTTTCTCAGGGGCAGTTCAAAATCCAAGCTTTTAACTGCCTTGTCACCCCCTCCATTGACAGAATCCAGTAACCAACCTGAGGCTGAGCCAGAATTTGAAAGTCATGCAGAGAAATTTGACTGGTACTCTCAGTGGTACCCTTTGATGCCAATTTGTGACCTTGACAAGAGGAAGCCACATGGGAAGAGGGTGTTGGGAATTGATGTGGTTGTGTGGTGGGATAGGAATGAGGGTGCTTGGCAGGTTCATGATGATGCTTGTCCTCATAGATTAGCACCCTTGTCTGATGGAAGGATTGATCAATGGGGCAGGTTGCAGTGTGTGTACCATGGTTGGTGTTTCAATGGCAAAGGAGAATGCCAGCTCATTCCTCAGGCACTCCCTGATGGCCCTCCGGTACATACGTCCAAAAAAGCATGTGTAGCTGCTTACCCAAGTACTGTGCAGAATGATATCTTGTGGTTCTGGCCAAATACTGATCCTCAATACAAAGATATTATTACAAGAAAAAGACCCCCATTCATACCAGAAATAGATGATCCATCGTATACTAAATCAATGGGAAACAGAGACATTCCTTATGGGTATGAAGTACTGATAGAAAATCTTATGGATCCTGCACATGTTCCATATGCACACTATGGACTAATGCGTACTCCGCAACCAAAAGTGAAAGCTGATAGAGAAGGGGGCAGGCCACTTGACATGTCTATTGAAAAGTTAGATATCAATGGCTTTTCAGCAAATCAGGCTTGGGGCAAAAGCAAATTTATGCCACCATGCATTTTTTATGCATATACTCCAGATCAACCTGCCTCATCTGGTGAAACTAAGAAATCATCAGCTAAGAAGAAAATGTGTTTAATCTTTGTTTGCGTTCCGGTTAGTCCTGGTAAAAGCAGATTGATATGGTGCTTCCCAAGAAACTTTGGATTGTGGATGGACAAAATTGTACCACGATGGATATTTCATGTGGGACAAAACCTGATTCTGGATTCAGATTTATATCTCCTCCATGTTGAGGAACATAAACTAAAGGATATTGGTCCAAACAATTGGCACAAAGCCTGTTTTGTGCCAACAAAGTCAGACGCCCTTGTTATTGGTTATAGAACGTGGCTAAGGAAGTATGCAGGTGGTCAGGTTGATTGGAGAGGAAAATATAGTGGAGCTCTTCCTCCAACACCTCCGAGAGAACAGCTTTTGGACAGGTACTGGTCCCATGTGGTGAATTGCAAGAGTTGCAATTCTGCTTATAAGAGCCTCAATGCGGTTGAAGTAATGCTGCAGATCATATCTGTTGCTTCAATTGGGATTGTTGCCGTCATGAAGCATGGTACAATGTCAGTGGCAAAAAGAAATTCAATGGTTGCCTTAGCAGTGCTATCATTTGCACTGTCACGGTGGTTAGCTCACTTCATATACAAAAACTTCCGTTATCATGACTATGAGCATGCCTTCCGCTGA
Predicted protein sequences of Glyma.05g156300
>Glyma.05g156300.1.p sequence-type=predicted peptide transcript=Glyma.05g156300.1 locus=Glyma.05g156300 ID=Glyma.05g156300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEAVCAFSVGTLHIPTAHETSNSFRKSIFLSNQVASPVSLVFLRGSSKSKLLTALSPPPLTESSNQPEAEPEFESHAEKFDWYSQWYPLMPICDLDKRKPHGKRVLGIDVVVWWDRNEGAWQVHDDACPHRLAPLSDGRIDQWGRLQCVYHGWCFNGKGECQLIPQALPDGPPVHTSKKACVAAYPSTVQNDILWFWPNTDPQYKDIITRKRPPFIPEIDDPSYTKSMGNRDIPYGYEVLIENLMDPAHVPYAHYGLMRTPQPKVKADREGGRPLDMSIEKLDINGFSANQAWGKSKFMPPCIFYAYTPDQPASSGETKKSSAKKKMCLIFVCVPVSPGKSRLIWCFPRNFGLWMDKIVPRWIFHVGQNLILDSDLYLLHVEEHKLKDIGPNNWHKACFVPTKSDALVIGYRTWLRKYAGGQVDWRGKYSGALPPTPPREQLLDRYWSHVVNCKSCNSAYKSLNAVEVMLQIISVASIGIVAVMKHGTMSVAKRNSMVALAVLSFALSRWLAHFIYKNFRYHDYEHAFR*






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