SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.05g153800): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.05g153800): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.05g153800

Feature Type:gene_model
Chromosome:Gm05
Start:34718598
stop:34723570
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g153800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G14147.1AT protein binding JGI N/AIEA
AT4G14147.2AT protein binding JGI N/AIEA
GO:0000902GO-bp cell morphogenesis EnsemblGenomesN/AIEA
GO:0030041GO-bp actin filament polymerization EnsemblGenomesN/AIEA
GO:0030041GO-bp actin filament polymerization JGI N/AIEA
GO:0030833GO-bp regulation of actin filament polymerization EnsemblGenomesN/AIEA
GO:0034314GO-bp Arp2/3 complex-mediated actin nucleation EnsemblGenomesN/AIEA
GO:0034314GO-bp Arp2/3 complex-mediated actin nucleation JGI N/AIEA
GO:0045010GO-bp actin nucleation EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005856GO-cc cytoskeleton EnsemblGenomesN/AIEA
GO:0005856GO-cc cytoskeleton JGI N/AIEA
GO:0005885GO-cc Arp2/3 protein complex EnsemblGenomesN/AIEA
GO:0005885GO-cc Arp2/3 protein complex JGI N/AIEA
GO:0015629GO-cc actin cytoskeleton EnsemblGenomesN/AIEA
GO:0003779GO-mf actin binding EnsemblGenomesN/AIEA
KOG1876 KOG Actin-related protein Arp2/3 complex, subunit ARPC4 JGI N/AIEA
PTHR22629Panther ARP2/3 COMPLEX 20 KD SUBUNIT JGI N/AIEA
PF05856PFAM ARP2/3 complex 20 kDa subunit (ARPC4) JGI N/AIEA

Expression Patterns of Glyma.05g153800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g153800 not represented in the dataset
Glyma.05g153800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g153800
ParalogEvidenceComments
Glyma.08g111500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g153800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g28650 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.05g153800
>Glyma.05g153800.2 sequence-type=transcript locus=Glyma.05g153800 ID=Glyma.05g153800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGAACATCATTGTTGTTTTCTGTGTTGGGGTCAAAGGCACCGCACTGAAGCGAATCTGGTAAAGCAGAAAAGCGTAGTTGGTGAAATTCCTGGGATCCCCCACTGGACGGAGTTTTTGTTGCTTTTTCTTTCATTCATCTCTTACACTCTACGACTACTCTTCCATTCCCAAACGAAACTCAGCGTTTCTTCTGATCATGGCAAGCACGTTGCGGTTATACTTGACCTGCATTCGGAACACGCTCGAGGCCGCAATGTGCCTCCAGAACTTTCCCTGCCAAGAAGTCGAAAGGCATAACAAGCCCGAGGTTGAACTCAAAACCAGCCCTGAACTCCTGCTCAATCCGGTTTTGATATGCCGAAATGAGGCCGAAAAATGCTTAATAGAAACATCTATCAATTCATTGCGGATAAGTCTCAAGGTGAAGCAGGCTGATGAACTTGAAAACATACTGACCAAAAAATTTCTAAGATTTCTGTCCATGAGAGCCGAGGCTTTCCAAGTCCTGAGGAGAAAGCCTGTTCAGGGATATGACATTAGCTTCCTTATAACAAATTACCACTGTGAGGAGATGCAGAAGCACAAACTTATTGACTTTATTGTGCAATTTATGGAGGACATTGATAAAGAGATAAGCGAGCTCAAAATGTCGGTGAACACAAGGGGGAGGCTTGTAGCTACAGAATTTCTGAAGCAGTTTATCTGATGCTTTAGACTAGTTAGAACTTCCATATCCGTGTAAATTGTACTATTGCAGGTCTAGTTTTCACTTCACTTATGAAGTGCTTGGTCCTTTGAGCCAATGGTTTGTGTTTTTATTATATTTAACAGAAGTGCAGAATAAATTTTGTAGTTTAGTACAGTATGTAAAGAAAGATATGACAAACCTGCATGTGACGCGGAGAAAATGAAGCTACAGAAGCTAGCAGTTAGCACATTTCCTTTCTCATGTCCCACGGTTCTTCGGTTTAGTAAAAACTTGTTAAAATAAAGGACAAATCAACtatttggttcttt
Coding sequences of Glyma.05g153800
>Glyma.05g153800.1 sequence-type=CDS polypeptide=Glyma.05g153800.1.p locus=Glyma.05g153800 ID=Glyma.05g153800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAAGCACGTTGCGGTTATACTTGACCTGCATTCGGAACACGCTCGAGGCCGCAATGTGCCTCCAGAACTTTCCCTGCCAAGAAGTCGAAAGGCATAACAAGCCCGAGGTTGAACTCAAAACCAGCCCTGAACTCCTGCTCAATCCGGTTTTGATATGCCGAAATGAGGCCGAAAAATGCTTAATAGAAACATCTATCAATTCATTGCGGATAAGTCTCAAGGTGAAGCAGGCTGATGAACTTGAAAACATACTGACCAAAAAATTTCTAAGATTTCTGTCCATGAGAGCCGAGGCTTTCCAAGTCCTGAGGAGAAAGCCTGTTCAGGGATATGACATTAGCTTCCTTATAACAAATTACCACTGTGAGGAGATGCAGAAGCACAAACTTATTGACTTTATTGTGCAATTTATGGAGAGCAAGATGATGTTTTTGTTTGCTTTTTCTACTACCTTCCCAACATTTAAAGTGGCTACTTTCACTGATCTGTTGACATTGATAAAGAGATAA

>Glyma.05g153800.2 sequence-type=CDS polypeptide=Glyma.05g153800.2.p locus=Glyma.05g153800 ID=Glyma.05g153800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAAGCACGTTGCGGTTATACTTGACCTGCATTCGGAACACGCTCGAGGCCGCAATGTGCCTCCAGAACTTTCCCTGCCAAGAAGTCGAAAGGCATAACAAGCCCGAGGTTGAACTCAAAACCAGCCCTGAACTCCTGCTCAATCCGGTTTTGATATGCCGAAATGAGGCCGAAAAATGCTTAATAGAAACATCTATCAATTCATTGCGGATAAGTCTCAAGGTGAAGCAGGCTGATGAACTTGAAAACATACTGACCAAAAAATTTCTAAGATTTCTGTCCATGAGAGCCGAGGCTTTCCAAGTCCTGAGGAGAAAGCCTGTTCAGGGATATGACATTAGCTTCCTTATAACAAATTACCACTGTGAGGAGATGCAGAAGCACAAACTTATTGACTTTATTGTGCAATTTATGGAGGACATTGATAAAGAGATAAGCGAGCTCAAAATGTCGGTGAACACAAGGGGGAGGCTTGTAGCTACAGAATTTCTGAAGCAGTTTATCTGA
Predicted protein sequences of Glyma.05g153800
>Glyma.05g153800.1.p sequence-type=predicted peptide transcript=Glyma.05g153800.1 locus=Glyma.05g153800 ID=Glyma.05g153800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEEMQKHKLIDFIVQFMESKMMFLFAFSTTFPTFKVATFTDLLTLIKR*

>Glyma.05g153800.2.p sequence-type=predicted peptide transcript=Glyma.05g153800.2 locus=Glyma.05g153800 ID=Glyma.05g153800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo