SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G12210.1 | AT | RAB geranylgeranyl transferase beta subunit 1 | JGI | N/A | IEA |
| GO:0018344 | GO-bp | protein geranylgeranylation | EnsemblGenomes | N/A | IEA |
| GO:0005968 | GO-cc | Rab-protein geranylgeranyltransferase complex | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | JGI | N/A | IEA |
| GO:0004663 | GO-mf | Rab geranylgeranyltransferase activity | EnsemblGenomes | N/A | IEA |
| KOG0366 | KOG | Protein geranylgeranyltransferase type II, beta subunit | JGI | N/A | IEA |
| PTHR11774 | Panther | GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT | JGI | N/A | IEA |
| PTHR11774:SF5 | Panther | JGI | N/A | IEA | |
| PF00432 | PFAM | Prenyltransferase and squalene oxidase repeat | JGI | N/A | IEA |
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Glyma.05g153500 not represented in the dataset |
Glyma.05g153500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.08g111200 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma05g28630 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.05g153500.1 sequence-type=CDS polypeptide=Glyma.05g153500.1.p locus=Glyma.05g153500 ID=Glyma.05g153500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGGAGAGCTGGCCACTGAGAAACATGTTCGATATATATTATCAGTTGAAAAGAGGAAAGATAACTTTGAATCTGTCGTAATGGAGCATCTAAGAATGAATGGGGCATATTGGGGATTGACCACTCTGGATCTTCTAGGAAAGCTTCATACCGTCGATGTTGATGAGGTTGTTTCGTGGTTGATGAGTTGTCAGCATGACTCAGGGGGATTTGGTGGAAATGTTGAACATGATCCGCACATCCTCTATACACTAAGTGCTGTGCAGGTGTTGTCTCTCTTTGATAAGCTGGATGTTATTGATGTAGATAAGGTCACAAGTTATATTGTCAGCCTGCAAAATGAAGATGGATCCTTTTCAGGGGATATGTGGGGTGAAGTTGATACACGGTTCTCATATATTGCTATTTGTTGTCTATCAATATTACATCGCTTGGATAAAATCAATGTGGAGAAGGCTGTGAATTGCAAAAATATGGATGGTGGTTTTGGGTGCACTCCTGGTGGGGAATCTCATGCTGGTCAAATTTTCTGTTGTGTGGGGGCCCTTGCCATAACAGGGTCGCTAGATCTTGTTGACAAAGACCTACTTGGTTGGTGGTTATGCGAGCGACAGGTTAAATCTGGAGGTCTGAATGGGCGTCCTGAGAAACTTCCTGATGTCTGCTACTCATGGTGGGTTCTTTCTAGCCTGATCATGATTGATAGGGTACATTGGATTAGTAAGGAGAAGCTTATAAAGTTCATCTTAGACTGCCAGGACACAGAAAATGGTGGAATTTCGGACAGGCCAGATGATGCCGTGGATGTCTTTCATACATTCTTTGGGGTGGCTGGACTTTCTCTTCTTGAATATCCAGGGCTGAAACCAGTAGATCCAGCTTATGCTTTACCTGTTGATGTTGTAAATAGAATTATTTTTACTAAATAA
>Glyma.05g153500.1.p sequence-type=predicted peptide transcript=Glyma.05g153500.1 locus=Glyma.05g153500 ID=Glyma.05g153500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MGELATEKHVRYILSVEKRKDNFESVVMEHLRMNGAYWGLTTLDLLGKLHTVDVDEVVSWLMSCQHDSGGFGGNVEHDPHILYTLSAVQVLSLFDKLDVIDVDKVTSYIVSLQNEDGSFSGDMWGEVDTRFSYIAICCLSILHRLDKINVEKAVNCKNMDGGFGCTPGGESHAGQIFCCVGALAITGSLDLVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWISKEKLIKFILDCQDTENGGISDRPDDAVDVFHTFFGVAGLSLLEYPGLKPVDPAYALPVDVVNRIIFTK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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