Glyma.05g153200

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Report for Sequence Feature Glyma.05g153200

Feature Type:	gene_model
Chromosome:	Gm05
Start:	34687009
stop:	34693243
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.05g153200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G13930.1	AT	Chalcone and stilbene synthase family protein	JGI	N/A	IEA
GO:0006633	GO-bp	fatty acid biosynthetic process	JGI	N/A	IEA
GO:0008152	GO-bp	metabolic process	EnsemblGenomes	N/A	IEA
GO:0008610	GO-bp	lipid biosynthetic process	JGI	N/A	IEA
GO:0009058	GO-bp	biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0009058	GO-bp	biosynthetic process	JGI	N/A	IEA
GO:0016020	GO-cc	membrane	JGI	N/A	IEA
GO:0003824	GO-mf	catalytic activity	EnsemblGenomes	N/A	IEA
GO:0004315	GO-mf	3-oxoacyl-[acyl-carrier-protein] synthase activity	JGI	N/A	IEA
GO:0016740	GO-mf	transferase activity	EnsemblGenomes	N/A	IEA
GO:0016746	GO-mf	transferase activity, transferring acyl groups	EnsemblGenomes	N/A	IEA
GO:0016746	GO-mf	transferase activity, transferring acyl groups	JGI	N/A	IEA
GO:0016747	GO-mf	transferase activity, transferring acyl groups other than amino-acyl groups	EnsemblGenomes	N/A	IEA
GO:0016747	GO-mf	transferase activity, transferring acyl groups other than amino-acyl groups	JGI	N/A	IEA
PTHR11877	Panther	HYDROXYMETHYLGLUTARYL-COA SYNTHASE	JGI	N/A	IEA
PTHR11877:SF9	Panther		JGI	N/A	IEA
PF00195	PFAM	Chalcone and stilbene synthases, N-terminal domain	JGI	N/A	IEA
PF02797	PFAM	Chalcone and stilbene synthases, C-terminal domain	JGI	N/A	IEA
PWY-6787	SoyCyc9	flavonoid biosynthesis (in equisetum)	Plant Metabolic Network		ISS
PWY1F-FLAVSYN	SoyCyc9	flavonoid biosynthesis	Plant Metabolic Network		ISS
GN7V-51987	SoyCyc9-rxn	naringenin-chalcone synthase	Plant Metabolic Network		ISS

Proteins Associated with Glyma.05g153200

Locus	Gene Symbol	Protein Name
	CHS2	chalcone synthase 2
	CHS2	chalcone synthase 2
	CHS2	Chalcone and stilbene synthases, C-terminal domain; Chalcone and stilbene synthases, N-terminal domain 2

Expression Patterns of Glyma.05g153200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.05g153200

Paralog	Evidence	Comments
Glyma.08g109200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g153200 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma05g28610	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.05g153200

Limit To All Plant Sequences

>Glyma.05g153200.1 sequence-type=CDS polypeptide=Glyma.05g153200.1.p locus=Glyma.05g153200 ID=Glyma.05g153200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGAGTGTTGAAGAGATCCGTCAGGCACAACGTGCAGAAGGCCCTGCCACTGTCATGGCTATTGGCACCGCCACTCCTCCCAACTGCGTCGATCAGAGTACCTATCCTGACTATTACTTCCGCATCACCAACAGCGAGCACATGACTGAGCTCAAAGAAAAGTTCAAGCGCATGTGTGATAAGTCAATGATTAAGAAGCGATACATGTACTTAAATGAAGAGATCCTGAAGGAGAATCCGAGTGTTTGTGCATATATGGCACCTTCATTGGATGCAAGGCAAGACATGGTGGTTGTGGAGGTACCAAAGTTGGGAAAAGAGGCTGCAACTAAGGCAATCAAGGAATGGGGTCAACCCAAGTCCAAGATTACCCATCTCATTTTTTGCACCACCAGCGGTGTCGACATGCCTGGTGCTGATTACCAGCTCACTAAACTACTGGGCCTTCGTCCCTCCGTCAAGCGTTACATGATGTACCAACAAGGCTGCTTTGCCGGTGGCACGGTGCTTCGTCTGGCCAAAGACCTCGCCGAAAACAACAAGGGTGCTCGCGTGCTTGTGGTTTGTTCTGAGATCACTGCAGTGACGTTCCGTGGCCCAACTGACACCCATCTTGATAGCCTTGTGGGTCAAGCCTTGTTTGGAGATGGTGCAGCTGCTGTCATTGTTGGATCAGACCCCTTACCAGTTGAAAAGCCTTTGTTTCAGCTTGTTTGGACTGCACAGACAATCCTTCCAGACAGTGAAGGGGCTATTGATGGCCACCTTCGAGAAGTTGGACTCACTTTCCATCTCCTCAAGGATGTTCCTGGACTCATCTCTAAGAATATCGAAAAGGCCTTAGTTGAAGCCTTCCAACCCTTGGGAATCTCTGATTACAACTCTATCTTCTGGATTGCACACCCTGGTGGACCGGCAATTTTAGACCAAGTCGAGGCTAAGTTAGGCTTGAAGCCTGAAAAAATGGAAGCTACTAGACATGTGCTCAGCGAGTATGGTAATATGTCAAGTGCATGTGTGTTATTCATCTTGGATCAGATGAGGAAGAAGTCTATAGAAAATGGACTTGGCACAACTGGTGAAGGCCTTGATTGGGGTGTGCTCTTTGGTTTTGGCCCTGGACTCACTGTTGAGACGGTTGTGCTCCGCAGTGTCAGTGTCTAA

Predicted protein sequences of Glyma.05g153200

Limit To All Plant Sequences

>Glyma.05g153200.1.p sequence-type=predicted peptide transcript=Glyma.05g153200.1 locus=Glyma.05g153200 ID=Glyma.05g153200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVSVEEIRQAQRAEGPATVMAIGTATPPNCVDQSTYPDYYFRITNSEHMTELKEKFKRMCDKSMIKKRYMYLNEEILKENPSVCAYMAPSLDARQDMVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPTDTHLDSLVGQALFGDGAAAVIVGSDPLPVEKPLFQLVWTAQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKALVEAFQPLGISDYNSIFWIAHPGGPAILDQVEAKLGLKPEKMEATRHVLSEYGNMSSACVLFILDQMRKKSIENGLGTTGEGLDWGVLFGFGPGLTVETVVLRSVSV*

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