SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G34880.1 | AT | Amidase family protein | JGI | N/A | IEA |
| GO:0016884 | GO-mf | carbon-nitrogen ligase activity, with glutamine as amido-N-donor | JGI | N/A | IEA |
| KOG1211 | KOG | Amidases | JGI | N/A | IEA |
| PTHR11895 | Panther | AMIDASE | JGI | N/A | IEA |
| PTHR11895:SF8 | Panther | AMIDASE FAMILY PROTEIN | JGI | N/A | IEA |
| PF01425 | PFAM | Amidase | JGI | N/A | IEA |
| GN7V-41176 | SoyCyc9-rxn | anspartyl-tRNA(Asn) amidotransferase | Plant Metabolic Network | ISS |
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Glyma.05g149500 not represented in the dataset |
Glyma.05g149500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.08g106000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma05g28220 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.05g149500.1 sequence-type=CDS polypeptide=Glyma.05g149500.1.p locus=Glyma.05g149500 ID=Glyma.05g149500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCCTGCAACACAGTAGGATGTTTCTCTTTGTTTTTTCAATTCATTCTTTTAATCCCTCTAGTCACTTTCTCTTCCTTATTTCTACCAACTACCACGGCCAAGGGATTCTCAATTGAAGAGGCAACTGTCTATGATCTCCAACTTGCTTTCCGTAGAAACCAATTAACCTCTAGGCAACTAGTTGAGTTCTACCACAAACAAATACAAACCCAAAACCCAGTTCTGAGAGGGGTGTTGGAGTTAAACCCAGATGCACTAGCACAAGCTGACAAAGCTGACCATGAGAGAAAGGCTAATGCACCAGGGACTCTTCCAGCATTGCATGGAATACCCATTTTGGTTAAGGACAACATTGCTACCAAGGATAAGATGAACACCACTGCAGGCTCTTTTGCACTTCTTGGCTCTGTGGTGCCTAGAGATGCAGGTGTAGTTACCAGGTTAAGAGAAGCTGGTGCTATCATTTTAGGCAAGGCCACCCTGAGTGAATGGTCACATTATAGGTCGAATGATGCACCCAGTGGTTGGAATGGCAGAGGTGGAGAAGGAAAGAATCCATACACAATGGATGGTCCCTGTGGATCTAGTAGCGGATCAGCAATATCAGTGGCCGCAAATTTGGTGGCAGTGTCACTTGGTAGTGAGACTGATGGGTCCATTTTATGCCCTTCAGGTTCTAATTCAGTAGTGGGCATTAAACCAACAGTTGGCCTCACTAGTAGAGCAGGGGTAGTTCCCATCACCCCATTACAGGACACAGTTGGACCAATTTGCAGGACTGTATCAGATGCTGCTCTTGTTCTTGAAACCATTGCAGGCATCGACGTCAATGATAACGCAACAATCAAAGCATCAAAGTATCTCCCAAGAGGTGGCTATGCTCAATTTCTAAAGAAAGATGGACTGAGAGGAAAGAGATTAGGTGTTGTAAGAACATTCTACGGTTTTGGAAATGACACTTTTATGCATGATACTTTCGAACTGCACCTGAAAACAATAAGGCAAAAAGGAGCAGTTTTGGTTGACAATTTGGAGATAAACAACATTCAGGAAATCTTTAATGACCAAAGTGAAGACATTGCTATGGCATATGAATTCAAATTATCCTTGAACGCATACCTCAGAGACTTAGTTGCTTCCCCAGTGAGAAGCTTGGCCGATGTGATAGCCTTCAACAAGAAACACCCAAAATTGGAGAAACTTAAGGAGTATGGCCAAGATCTCATGTTGATAGCTCAAAAGACAAATGGAGTTAGGGAACTGAAGGAAGCAGTGTTAAACATGGCAAGATTGTCACATAATGGATTTGAGAAATTAATGATAACAAAAAAACTTGACGCGGTGGTAGTACCCTTTTCATTCTTTGTTAGTATACTTGCAAGGGGAGGTTATCCTGGAGTAACTGTTCCAGCGGGATATGAAAAGGGTGCACCATTTGGAATTATCTTTGGAGGTTTGAAAGGCTCAGAACCAAAGCTCATCGAAATTGCATATTCCTTTGAGCAAGCTACTTTGATCAGGAAGCCCCCACCACTCCGAAAGTTAAAGGTTTAA
>Glyma.05g149500.1.p sequence-type=predicted peptide transcript=Glyma.05g149500.1 locus=Glyma.05g149500 ID=Glyma.05g149500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MACNTVGCFSLFFQFILLIPLVTFSSLFLPTTTAKGFSIEEATVYDLQLAFRRNQLTSRQLVEFYHKQIQTQNPVLRGVLELNPDALAQADKADHERKANAPGTLPALHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAGVVTRLREAGAIILGKATLSEWSHYRSNDAPSGWNGRGGEGKNPYTMDGPCGSSSGSAISVAANLVAVSLGSETDGSILCPSGSNSVVGIKPTVGLTSRAGVVPITPLQDTVGPICRTVSDAALVLETIAGIDVNDNATIKASKYLPRGGYAQFLKKDGLRGKRLGVVRTFYGFGNDTFMHDTFELHLKTIRQKGAVLVDNLEINNIQEIFNDQSEDIAMAYEFKLSLNAYLRDLVASPVRSLADVIAFNKKHPKLEKLKEYGQDLMLIAQKTNGVRELKEAVLNMARLSHNGFEKLMITKKLDAVVVPFSFFVSILARGGYPGVTVPAGYEKGAPFGIIFGGLKGSEPKLIEIAYSFEQATLIRKPPPLRKLKV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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