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A previous version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G67320.2 | AT | DNA primase, large subunit family | JGI | N/A | IEA |
GO:0006260 | GO-bp | DNA replication | EnsemblGenomes | N/A | IEA |
GO:0006269 | GO-bp | DNA replication, synthesis of RNA primer | EnsemblGenomes | N/A | IEA |
GO:0006269 | GO-bp | DNA replication, synthesis of RNA primer | JGI | N/A | IEA |
GO:0071897 | GO-bp | DNA biosynthetic process | EnsemblGenomes | N/A | IEA |
GO:0005658 | GO-cc | alpha DNA polymerase:primase complex | EnsemblGenomes | N/A | IEA |
GO:0003677 | GO-mf | DNA binding | EnsemblGenomes | N/A | IEA |
GO:0003697 | GO-mf | single-stranded DNA binding | EnsemblGenomes | N/A | IEA |
GO:0003887 | GO-mf | DNA-directed DNA polymerase activity | EnsemblGenomes | N/A | IEA |
GO:0003896 | GO-mf | DNA primase activity | EnsemblGenomes | N/A | IEA |
GO:0003896 | GO-mf | DNA primase activity | JGI | N/A | IEA |
GO:0003899 | GO-mf | DNA-directed 5'-3' RNA polymerase activity | EnsemblGenomes | N/A | IEA |
GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
GO:0016779 | GO-mf | nucleotidyltransferase activity | EnsemblGenomes | N/A | IEA |
GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
GO:0051536 | GO-mf | iron-sulfur cluster binding | EnsemblGenomes | N/A | IEA |
GO:0051539 | GO-mf | 4 iron, 4 sulfur cluster binding | EnsemblGenomes | N/A | IEA |
KOG2267 | KOG | Eukaryotic-type DNA primase, large subunit | JGI | N/A | IEA |
PTHR10537 | Panther | DNA PRIMASE LARGE SUBUNIT | JGI | N/A | IEA |
PF04104 | PFAM | Eukaryotic and archaeal DNA primase, large subunit | JGI | N/A | IEA |
Glyma.05g148900 not represented in the dataset |
Glyma.05g148900 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
Paralog | Evidence | Comments |
---|---|---|
Glyma.08g105600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma05g28150 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.05g148900.1 sequence-type=CDS polypeptide=Glyma.05g148900.1.p locus=Glyma.05g148900 ID=Glyma.05g148900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAGATCGTTCGTCCTCAGAATCGCAGAAACTTGTTGTCCTCCTCCAACGAAGCCGTTTCTGCTCCCACCATTCCCCTCTATCGCTCTGCTCCCCCACTTGAAGTCAGGCTCGAGGATTTCGAGTCCTTCGCCATCGATCGCCTCCGAGTTCTCAAGGGGATTTCTGATGGTATGTCACGGGGGAAAAAAGCGGAAGAAATGGAGAATTTGGTAAAGGACCTGTGGAAAGTGAATATGAGACATCAAGAGGCAACTCAGGTTCTGAACAAGGATATTATATCTCATTTTGTTCTACGTCTGGTGTATTGCAGAACGGAGGACTTGAGGAAATGGTTTCTTTCCATGGAAACTGCACTCTTTCGCTACCGTTTTCGTCTTCTGAATGCTGAAGCTCAGAGGACAGTCATGGAAGAATTTGACCTTCCTTACAGGGCCGTTAGCAATGTGGAATTTGAGAGCATAAAAGAGAAATTGGGACAAGTTGCACGTTCTATGGGTCAGCCTTCACCTACTGCTGATGCTATCTTCTACAAGGTACCGTTTGAAGAAGTTCCAGAGCTTGTTGCTGGACGGAGAGTGTTTATAAATCAAGGATATGCATATGTTGCAATGAATCAGATTGTTTCACTTGTAGCCACACAATTCCGCAGTCAGCTGTCAAAGGCACTTATCCTTACAAACAGAAAATGGACATCTTCAATTAGAGAGCAAGAGAAACATAGGTTGACTCCTATTGTGGAAGCCCTGTCCTCAAGTTATCTGGGTCCTGATTATTCTCAGTCAAGAGAATATGCTGATATATCATTAAAGGACATAGATCAAGTTGCCAAGAGCTCATTTCCTTTGTGCATGCGTCACCTATTTGATAAGCTGAAAGAGGATCATCATTTAAAGCATGGAGGGAGGATGCAACTAGGCCTCTTTCTGAAGGGTGTTGGCTTAAATCTGGATGATGCACTTGCATTTTGGAGGTCAGAGTTCTCTAAAAAGGTTGGTTTGGAGAAGTTTGAGAAACAATATGCATACAACATACGCCATAATTATGGAAAGGAAGGGAAGAGAACTGATTATACTCCCTATTCTTGTCAAAAGATTATTTCATCAACTCCTGGAGCTGGGGATCATCATGGTTGCCCCTATCGACATTTCAGTGAAGAGAACCTAAGAGCTGCTCTTAGCGGAATGGGGGTAAACAGTCAAGCAATGGAAGATGTGATGGACAAAGTGAGAAATAGACATTATCAGTTGGCTTGCACCTTGACATTTGAAGCTCTTCATGGCATGCCGTGTGATGCAGGGATTAACCATCCAAATCAATACTTCAGTGACAGTCAAAAGATATTAAAGCCAAAGAAGGATTCTTCAGCCTAA
>Glyma.05g148900.1.p sequence-type=predicted peptide transcript=Glyma.05g148900.1 locus=Glyma.05g148900 ID=Glyma.05g148900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MEIVRPQNRRNLLSSSNEAVSAPTIPLYRSAPPLEVRLEDFESFAIDRLRVLKGISDGMSRGKKAEEMENLVKDLWKVNMRHQEATQVLNKDIISHFVLRLVYCRTEDLRKWFLSMETALFRYRFRLLNAEAQRTVMEEFDLPYRAVSNVEFESIKEKLGQVARSMGQPSPTADAIFYKVPFEEVPELVAGRRVFINQGYAYVAMNQIVSLVATQFRSQLSKALILTNRKWTSSIREQEKHRLTPIVEALSSSYLGPDYSQSREYADISLKDIDQVAKSSFPLCMRHLFDKLKEDHHLKHGGRMQLGLFLKGVGLNLDDALAFWRSEFSKKVGLEKFEKQYAYNIRHNYGKEGKRTDYTPYSCQKIISSTPGAGDHHGCPYRHFSEENLRAALSGMGVNSQAMEDVMDKVRNRHYQLACTLTFEALHGMPCDAGINHPNQYFSDSQKILKPKKDSSA*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||