SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.05g147900

Feature Type:gene_model
Chromosome:Gm05
Start:34213379
stop:34217429
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g147900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G27340.1AT Galactose oxidase/kelch repeat superfamily protein JGI N/AIEA
GO:0010305GO-bp leaf vascular tissue pattern formation EnsemblGenomesN/AIEA
GO:0010928GO-bp regulation of auxin mediated signaling pathway EnsemblGenomesN/AIEA
GO:0016567GO-bp protein ubiquitination EnsemblGenomesN/AIEA
GO:0031146GO-bp SCF-dependent proteasomal ubiquitin-dependent protein catabolic process EnsemblGenomesN/AIEA
GO:0060776GO-bp simple leaf morphogenesis EnsemblGenomesN/AIEA
GO:0004842GO-mf ubiquitin-protein transferase activity EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
PF00646PFAM F-box domain JGI N/AIEA

Expression Patterns of Glyma.05g147900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g147900
ParalogEvidenceComments
Glyma.08g104800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g147900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g28050 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.05g147900
>Glyma.05g147900.2 sequence-type=transcript locus=Glyma.05g147900 ID=Glyma.05g147900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCAATGGTTAAAAAAAAAAACAGTGGGGCACGGGTGGGTGAGTAAAACTCCGTCCTGTGTGGTAGGCAACGTGGAAAATGAAGAGCGGGTAACAAGGAGAGAGAGAGAGAGGTTTTTACACAAAGGAGAATTGAGTTGGGTTGGGGGCATGGAAGAAGAAGAAGGGCTTGCCATGCTCATCACtcaccttcaccttcaccttcaccatttctctcactctctttctcctccttttacccttcaccctcCAGTCTCTCATCAACTCCCCAGATTCTCCTTCTTTGACATTGATGATTACTCCGTAGATGACTTCTGTGGCCTTGTAATGGCAGCTGGAAAGTCTGGAAGTTCCAGGATGATGGAACCTCTAAAGCATCCATCTAAGAAGTCTCGAAGAGATAGGAGCTGTGGAAAATCATCTGGAAGGTCCTCCAGGGATGAAGCTATGGAACAACAAATTTGGAAAAATTTGCCTGAGGATCTATTTGAGCCTGTGATTGCACGACTTCCCATTGCCACATTTTTCCGCTTCCGCTCTGTATGCCAGCGATGGAATTCCTTGCTGTCTTCTCAAAGTTTTTCTCTGCATTGTGCTCAAGTCAAACAAGCAAACCCATGGTTTTACACTGTAACTCATGAACATGCAAATTCTGGAGCCATGTATGACCCTTCTATGAAGAAGTGGTACCATCCCACTATATCAACACTGCCCGCAGAGTTGATAGTTTTACCAGTGGCTTCTGCAGGGGGTCTAGTTTGCTTTCTTGACATTTATCATCAAAATTTCTATGTTTGTAACCCATTGATTCAATCCTTAAAGGAGTTACCAGCTCGGTCAGTTAGGGTTTGGGCTCGTGATGCTGTAGGAATGACAGTAAATGGGAACTCAACTGGTGCTGGCTACAAGATCCTATTGGTGGGTTGTGATGGAGAATATGAAATTTATGACTCCCTAACAAAGTCTTGGAGCCATCCAGAAAAAATGCCTTCAGATATTAAGCTGCCGCTGTCACTCAATTTTAGGTCACACGCTGTTTCTATTAACAGCACCCTGTACTTCATGCATTCAGATCCCAAAGGGATTGTTTCGTATGATATGGCAACTGGGGTTTGGACACAGTACATAATCCCAGCGCCATTGCATCTGACTGACCACATGCTGGCCGAGTGCGATGGCCGGCTATTGCTTGTTGGGCTGCTCACGAAGAATGCAGCCACATGCATATGCATATGGGAGCTGCAGAAGATGACTTTCTTGTGGAAGGAGGTTGACAGAATGCCAAACGTCTGGTGCTTGGACTTTTATGGGAAGCACGTTAGAATGACTTGCTTGGGAAACAAAGACTTGCTCATGTTATCCTTGAGATCAAGACAAATGAATCGATTGGTTACTTACAACATAGCAAGTAGGGAATGGGTGAAAGTTCCTTGGTGTCTGGTGCCACATGGAAGAAAACGGCAATGGATAGCACATGGTACTGCATTTTATCCATGCCTCTCTGCAATGGCCTGATTTAGCTTGTATAATACAGCAATGGCCTGAGAATATTTCCCTCAAAACATGAGGTTCTTTGCAATTTGCTGGTAATTGAGGCTGATGTAGGAAAAATAATGTTCATTGCTGGTTAACAAAGCAGATGGAAAACGATATGGGTTTGTAGTACTTCATGTATTTTTCATGCTCTCAAACATGCACCTCGATCACTTGCTTTCAAGACTTTTCCCTGTATATGAATGTTGTGAAGGTTTAATTCCAGCTAGTATCATTCATGTTTTCAAGCTGGAAGGTCCAAACTGGGGTTGGCTCTACCAACTAGAATTGAAGCCTTGTGAATCAGGGGAGAGGCATATGAAGAACCTAAAACGTTCTCAACCTGGCCTTGCAGTCTGGTGTCACTTGGCTGCCTCATGCTGAATCCTTGTTGCTCTTGCAGTCCTGCATTACATATATATAACATCATGTTTCTACTGAAATTTGTGACTTCAAAAGGTTGCTTACAGCGTCACACGGGAAAGAAGCTGGGATTTCAATTTTGATGGCTCCCCCCAACTACTCAATGTAGTACACCCTTCAAGTGAAGGTCTTTATTATTTTACGGCTTATGATTGTTGTCTCTATTTTCGGACAGTGGGAACGAAGAACCAACCACTATACAGATAATTTATTTTGCGTTTGATCGCTGAATAGAGATTTCGATACAGTAACTTTGTTTCGCTAGTCAAAACATAAAAGATGAAGAAGAGTGATTTCTTTCAATGTTTCAGGTTGCCAACTTGTTCAGGCCCCAAAATACAAAAGCTATCTTTTGAGGGTATCATAAAGAAAAACGATATATA
Coding sequences of Glyma.05g147900
>Glyma.05g147900.1 sequence-type=CDS polypeptide=Glyma.05g147900.1.p locus=Glyma.05g147900 ID=Glyma.05g147900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGAAGAAGAAGGGCTTGCCATGCTCATCACTCACCTTCACCTTCACCTTCACCATTTCTCTCACTCTCTTTCTCCTCCTTTTACCCTTCACCCTCCAGTCTCTCATCAACTCCCCAGATTCTCCTTCTTTGACATTGATGATTACTCCGTAGATGACTTCTGTGGCCTTGTAATGGCAGCTGGAAAGTCTGGAAGTTCCAGGATGATGGAACCTCTAAAGCATCCATCTAAGAAGTCTCGAAGAGATAGGAGCTGTGGAAAATCATCTGGAAGGTCCTCCAGGGATGAAGCTATGGAACAACAAATTTGGAAAAATTTGCCTGAGGATCTATTTGAGCCTGTGATTGCACGACTTCCCATTGCCACATTTTTCCGCTTCCGCTCTGTATGCCAGCGATGGAATTCCTTGCTGTCTTCTCAAAGTTTTTCTCTGCATTGTGCTCAAGTCAAACAAGCAAACCCATGGTTTTACACTGTAACTCATGAACATGCAAATTCTGGAGCCATGTATGACCCTTCTATGAAGAAGTGGTACCATCCCACTATATCAACACTGCCCGCAGAGTTGATAGTTTTACCAGTGGCTTCTGCAGGGGGTCTAGTTTGCTTTCTTGACATTTATCATCAAAATTTCTATGTTTGTAACCCATTGATTCAATCCTTAAAGGAGTTACCAGCTCGGTCAGTTAGGGTTTGGGCTCGTGATGCTGTAGGAATGACAGTAAATGGGAACTCAACTGGTGCTGGCTACAAGATCCTATTGGTGGGTTGTGATGGAGAATATGAAATTTATGACTCCCTAACAAAGTCTTGGAGCCATCCAGAAAAAATGCCTTCAGATATTAAGCTGCCGCTGTCACTCAATTTTAGGTCACACGCTGTTTCTATTAACAGCACCCTGTACTTCATGCATTCAGATCCCAAAGGGATTGTTTCGTATGATATGGCAACTGGGGTTTGGACACAGTACATAATCCCAGCGCCATTGCATCTGACTGACCACATGCTGGCCGAGTGCGATGGCCGGCTATTGCTTGTTGGGCTGCTCACGAAGAATGCAGCCACATGCATATGCATATGGGAGCTGCAGAAGATGACTTTCTTGTGGAAGGAGGTTGACAGAATGCCAAACGTCTGGTGCTTGGACTTTTATGGGAAGCACGTTAGAATGACTTGCTTGGGAAACAAAGACTTGCTCATGTTATCCTTGAGATCAAGACAAATGAATCGATTGGTTACTTACAACATAGCAAGTAGGGAATGGGTGAAAGTTCCTTGGTGTCTGGTGCCACATGGAAGAAAACGGCAATGGATAGCACATGGTACTGCATTTTATCCATGCCTCTCTGCAATGGCCTGA

>Glyma.05g147900.2 sequence-type=CDS polypeptide=Glyma.05g147900.2.p locus=Glyma.05g147900 ID=Glyma.05g147900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGAAGAAGAAGGGCTTGCCATGCTCATCACTCACCTTCACCTTCACCTTCACCATTTCTCTCACTCTCTTTCTCCTCCTTTTACCCTTCACCCTCCAGTCTCTCATCAACTCCCCAGATTCTCCTTCTTTGACATTGATGATTACTCCGTAGATGACTTCTGTGGCCTTGTAATGGCAGCTGGAAAGTCTGGAAGTTCCAGGATGATGGAACCTCTAAAGCATCCATCTAAGAAGTCTCGAAGAGATAGGAGCTGTGGAAAATCATCTGGAAGGTCCTCCAGGGATGAAGCTATGGAACAACAAATTTGGAAAAATTTGCCTGAGGATCTATTTGAGCCTGTGATTGCACGACTTCCCATTGCCACATTTTTCCGCTTCCGCTCTGTATGCCAGCGATGGAATTCCTTGCTGTCTTCTCAAAGTTTTTCTCTGCATTGTGCTCAAGTCAAACAAGCAAACCCATGGTTTTACACTGTAACTCATGAACATGCAAATTCTGGAGCCATGTATGACCCTTCTATGAAGAAGTGGTACCATCCCACTATATCAACACTGCCCGCAGAGTTGATAGTTTTACCAGTGGCTTCTGCAGGGGGTCTAGTTTGCTTTCTTGACATTTATCATCAAAATTTCTATGTTTGTAACCCATTGATTCAATCCTTAAAGGAGTTACCAGCTCGGTCAGTTAGGGTTTGGGCTCGTGATGCTGTAGGAATGACAGTAAATGGGAACTCAACTGGTGCTGGCTACAAGATCCTATTGGTGGGTTGTGATGGAGAATATGAAATTTATGACTCCCTAACAAAGTCTTGGAGCCATCCAGAAAAAATGCCTTCAGATATTAAGCTGCCGCTGTCACTCAATTTTAGGTCACACGCTGTTTCTATTAACAGCACCCTGTACTTCATGCATTCAGATCCCAAAGGGATTGTTTCGTATGATATGGCAACTGGGGTTTGGACACAGTACATAATCCCAGCGCCATTGCATCTGACTGACCACATGCTGGCCGAGTGCGATGGCCGGCTATTGCTTGTTGGGCTGCTCACGAAGAATGCAGCCACATGCATATGCATATGGGAGCTGCAGAAGATGACTTTCTTGTGGAAGGAGGTTGACAGAATGCCAAACGTCTGGTGCTTGGACTTTTATGGGAAGCACGTTAGAATGACTTGCTTGGGAAACAAAGACTTGCTCATGTTATCCTTGAGATCAAGACAAATGAATCGATTGGTTACTTACAACATAGCAAGTAGGGAATGGGTGAAAGTTCCTTGGTGTCTGGTGCCACATGGAAGAAAACGGCAATGGATAGCACATGGTACTGCATTTTATCCATGCCTCTCTGCAATGGCCTGA
Predicted protein sequences of Glyma.05g147900
>Glyma.05g147900.1.p sequence-type=predicted peptide transcript=Glyma.05g147900.1 locus=Glyma.05g147900 ID=Glyma.05g147900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEEEEGLAMLITHLHLHLHHFSHSLSPPFTLHPPVSHQLPRFSFFDIDDYSVDDFCGLVMAAGKSGSSRMMEPLKHPSKKSRRDRSCGKSSGRSSRDEAMEQQIWKNLPEDLFEPVIARLPIATFFRFRSVCQRWNSLLSSQSFSLHCAQVKQANPWFYTVTHEHANSGAMYDPSMKKWYHPTISTLPAELIVLPVASAGGLVCFLDIYHQNFYVCNPLIQSLKELPARSVRVWARDAVGMTVNGNSTGAGYKILLVGCDGEYEIYDSLTKSWSHPEKMPSDIKLPLSLNFRSHAVSINSTLYFMHSDPKGIVSYDMATGVWTQYIIPAPLHLTDHMLAECDGRLLLVGLLTKNAATCICIWELQKMTFLWKEVDRMPNVWCLDFYGKHVRMTCLGNKDLLMLSLRSRQMNRLVTYNIASREWVKVPWCLVPHGRKRQWIAHGTAFYPCLSAMA*

>Glyma.05g147900.2.p sequence-type=predicted peptide transcript=Glyma.05g147900.2 locus=Glyma.05g147900 ID=Glyma.05g147900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEEEEGLAMLITHLHLHLHHFSHSLSPPFTLHPPVSHQLPRFSFFDIDDYSVDDFCGLVMAAGKSGSSRMMEPLKHPSKKSRRDRSCGKSSGRSSRDEAMEQQIWKNLPEDLFEPVIARLPIATFFRFRSVCQRWNSLLSSQSFSLHCAQVKQANPWFYTVTHEHANSGAMYDPSMKKWYHPTISTLPAELIVLPVASAGGLVCFLDIYHQNFYVCNPLIQSLKELPARSVRVWARDAVGMTVNGNSTGAGYKILLVGCDGEYEIYDSLTKSWSHPEKMPSDIKLPLSLNFRSHAVSINSTLYFMHSDPKGIVSYDMATGVWTQYIIPAPLHLTDHMLAECDGRLLLVGLLTKNAATCICIWELQKMTFLWKEVDRMPNVWCLDFYGKHVRMTCLGNKDLLMLSLRSRQMNRLVTYNIASREWVKVPWCLVPHGRKRQWIAHGTAFYPCLSAMA*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo