SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G67550.1 | AT | urease | JGI | N/A | IEA |
| GO:0006807 | GO-bp | nitrogen compound metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0019627 | GO-bp | urea metabolic process | JGI | N/A | IEA |
| GO:0043419 | GO-bp | urea catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0043419 | GO-bp | urea catabolic process | JGI | N/A | IEA |
| GO:0009039 | GO-mf | urease activity | EnsemblGenomes | N/A | IEA |
| GO:0009039 | GO-mf | urease activity | JGI | N/A | IEA |
| GO:0016151 | GO-mf | nickel cation binding | EnsemblGenomes | N/A | IEA |
| GO:0016151 | GO-mf | nickel cation binding | JGI | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | EnsemblGenomes | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | JGI | N/A | IEA |
| GO:0016810 | GO-mf | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| PTHR11647 | Panther | AMINOHYDROLASE | JGI | N/A | IEA |
| PTHR11647:SF39 | Panther | JGI | N/A | IEA | |
| PF00449 | PFAM | Urease alpha-subunit, N-terminal domain | JGI | N/A | IEA |
| PF00547 | PFAM | Urease, gamma subunit | JGI | N/A | IEA |
| PF00699 | PFAM | Urease beta subunit | JGI | N/A | IEA |
| PF01979 | PFAM | Amidohydrolase family | JGI | N/A | IEA |
| PWY-5704 | SoyCyc9 | urea degradation II | Plant Metabolic Network | ISS | |
| URDEGR-PWY | SoyCyc9 | superpathway of allantoin degradation in plants | Plant Metabolic Network | ISS | |
| GN7V-60414 | SoyCyc9-rxn | urease | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| EU4 | urease |
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Glyma.05g146000 not represented in the dataset |
Glyma.05g146000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.08g103000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma05g27840 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.05g146000.1 sequence-type=CDS polypeptide=Glyma.05g146000.1.p locus=Glyma.05g146000 ID=Glyma.05g146000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAAACTGAGTCCAAGAGAGGTGGAGAAACTAGGCCTTCACAATGCTGGCTACCTTGCTCAGAAACGTCTTGCTCGTGGTTTAAGACTCAATTATACTGAAGCTGTGGCACTCATTGCCACGCAGATTATGGAATTTGCTCGTGATGGTGAAAAGACTGTGGCACAACTAATGTGCATTGGGAAACATCTATTGGGGAGGAGACAAGTTCTTCCAGAGGTTCAACATCTCTTGAATGCTGTTCAGGTTGAAGCTACCTTTCCTGATGGGACTAAGCTGGTCACAGTTCATGATCCAATTTCCTGTGAGCATGGAGATCTAGGGCAAGCACTATTTGGTTCTTTTCTTCCAGTACCTTCACTTGACAAGTTTGCTGAGAACAAAGAAGATAATAGAATTCCAGGTGAAATAATATATGGAGATGGAAGTCTAGTTCTTAACCCTGGAAAGAATGCAGTGATTCTCAAAGTTGTCAGCAATGGAGACCGGCCAATTCAGGTTGGTAGCCACTATCATTTTATTGAAGTAAATCCCTACTTGACTTTTGATCGAAGGAAAGCATATGGCATGCGCCTCAATATAGCTGCAGGAACTGCTGTTCGCTTTGAGCCAGGGGATAGTAAAAGCGTTAAGCTTGTAAGAATTGGAGGTAACAAAGTCATTAGAGGAGGTAATGGCATTGCTGATGGTCAAGTTAATGAAACCAATCTTAGAGAAGCAATGGAGGCTGTGTGCAAACGGGGATTTGGACATAAGGAAGAGGAAGATGCAAGTGAAGGTATTACTGGTGACCCTGACAGTCCATTCACCACAATCATTCCTCGTGAGGAATATGCTAACAAGTACGGTCCAACTACTGGTGACAAAATCCGTCTTGGTGACACTGATTTGTTTGCTAAAATTGAGAAAGATTTTGCTCTCTATGGTGATGAATGTGTTTTTGGAGGTGGGAAAGTTTTAAGAGATGGAATGGGTCAGTCATGTGGGGATCCACCTGCAATCTCCTTGGATACTGTTATAACAAATGCTGTGATAATTGATTATAGTGGAATCATCAAAGCGGATATAGGCATTAAAGATGGTCTCATTGTTTCAATTGGAAAAGCAGGAAATCCAGACATCATGGATGATGTATTTTTTAATATGATCATTGGGGCTAATACTGAAGTTATTGCTGGAGAAGGGTTGATTGTAACAGCAGGGGCTATAGATTGTCACGTGCATTATATATGCCCTCAATTAGTAGATGAGGCCATATCAAGCGGCATCACAACATTAGTGGGAGGTGGAACCGGACCGACTGCTGGAACACGTGCCACAACTTGTACACCAGCACCATCTCAGATGAAACTAATGCTGCAATCAACTGATGACCTGCCTCTAAACTTTGGTTTCACTGGCAAAGGAAGTAGTTCCAAGCCTGATGAACTACATGACATAATCAAGGCTGGAGCAATGGGACTGAAGCTGCATGAGGACTGGGGAAGTACTCCCGCTGCAATAGACAGTTGCTTGACTGTTGCTGATCAATACGATATCCAGATTAACATACATACCGACACCCTAAATGAAGCTGGATTTGTCGAACATAGCATTGCAGCATTTAAAGGAAGAACTATTCATACTTACCACAGTGAAGGTGCAGGTGGTGGTCATGCTCCAGATATCATCAAAGTATGTGGTATGAAGAATGTTCTGCCCTCATCAACAAACCCAACACGCCCTTTAACACTCAATACTATAGATGAGCATCTTGACATGTTGATGGTCTGCCATCATCTGAATAGGGAAATTCCAGAAGACTTAGCTTTTGCATGTTCAAGGATAAGAGAAGGAACGATTGCTGCCGAAGATATTTTGCATGATATTGGGGCAATTAGCATCATATCTTCTGATTCTCAGGCTATGGGTCGAGTTGGAGAGGTGATAAGCAGAACTTGGCAAACTGCCAATAAGATGAAGGTACAACGAGGACCACTCCAGCCTGGTGAATCCGACAATGACAACTTCCGGATCAAACGATACATTGCAAAATACACTATAAATCCAGCTATAGCGAATGGTTTTTCACAATATGTTGGTTCGGTGGAGGTGGGAAAGTTAGCTGATCTTGTGATGTGGAAGCCATCTTTTTTTGGGGCAAAACCAGAAATGGTGATCAAAGGTGGGGTGGTTGCATGGGCTGATATGGGTGACCCAAATGCAAGCATCCCCACTCCTGAACCGGTGAAGATGAGGCCTATGTTTGGAACACTAGGCAAGGCTGGTGGTGCTTTATCCATAGCTTTTGTGAGCAAGGCAGCTGTAGACCAGAGAGTACATGCTCTATACGGACTGAACAAGAGGGTGGAAGCAGTAGGCAATGTGAGGAAGCTCACTAAACTAGACATGAAACTTAATGACTCTCTTCCACAAATCACTGTCGACCCAGATAACTACACTGTTACAGCAGATGGCGAGGTTCTCACCAGTTTTGCAACCACCTTTGTTCCCCTTTCTCGAAATTACTTCCTCTTTTAA
>Glyma.05g146000.1.p sequence-type=predicted peptide transcript=Glyma.05g146000.1 locus=Glyma.05g146000 ID=Glyma.05g146000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MKLSPREVEKLGLHNAGYLAQKRLARGLRLNYTEAVALIATQIMEFARDGEKTVAQLMCIGKHLLGRRQVLPEVQHLLNAVQVEATFPDGTKLVTVHDPISCEHGDLGQALFGSFLPVPSLDKFAENKEDNRIPGEIIYGDGSLVLNPGKNAVILKVVSNGDRPIQVGSHYHFIEVNPYLTFDRRKAYGMRLNIAAGTAVRFEPGDSKSVKLVRIGGNKVIRGGNGIADGQVNETNLREAMEAVCKRGFGHKEEEDASEGITGDPDSPFTTIIPREEYANKYGPTTGDKIRLGDTDLFAKIEKDFALYGDECVFGGGKVLRDGMGQSCGDPPAISLDTVITNAVIIDYSGIIKADIGIKDGLIVSIGKAGNPDIMDDVFFNMIIGANTEVIAGEGLIVTAGAIDCHVHYICPQLVDEAISSGITTLVGGGTGPTAGTRATTCTPAPSQMKLMLQSTDDLPLNFGFTGKGSSSKPDELHDIIKAGAMGLKLHEDWGSTPAAIDSCLTVADQYDIQINIHTDTLNEAGFVEHSIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGMKNVLPSSTNPTRPLTLNTIDEHLDMLMVCHHLNREIPEDLAFACSRIREGTIAAEDILHDIGAISIISSDSQAMGRVGEVISRTWQTANKMKVQRGPLQPGESDNDNFRIKRYIAKYTINPAIANGFSQYVGSVEVGKLADLVMWKPSFFGAKPEMVIKGGVVAWADMGDPNASIPTPEPVKMRPMFGTLGKAGGALSIAFVSKAAVDQRVHALYGLNKRVEAVGNVRKLTKLDMKLNDSLPQITVDPDNYTVTADGEVLTSFATTFVPLSRNYFLF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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