Glyma.05g140800

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Report for Sequence Feature Glyma.05g140800

Feature Type:	gene_model
Chromosome:	Gm05
Start:	33369730
stop:	33378540
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.05g140800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G46210.1	AT	cullin4	JGI	N/A	IEA
GO:0006511	GO-bp	ubiquitin-dependent protein catabolic process	EnsemblGenomes	N/A	IEA
GO:0006511	GO-bp	ubiquitin-dependent protein catabolic process	JGI	N/A	IEA
GO:0016567	GO-bp	protein ubiquitination	EnsemblGenomes	N/A	IEA
GO:0031461	GO-cc	cullin-RING ubiquitin ligase complex	EnsemblGenomes	N/A	IEA
GO:0031461	GO-cc	cullin-RING ubiquitin ligase complex	JGI	N/A	IEA
GO:0080008	GO-cc	Cul4-RING E3 ubiquitin ligase complex	EnsemblGenomes	N/A	IEA
GO:0031625	GO-mf	ubiquitin protein ligase binding	EnsemblGenomes	N/A	IEA
GO:0031625	GO-mf	ubiquitin protein ligase binding	JGI	N/A	IEA
GO:0061630	GO-mf	ubiquitin protein ligase activity	EnsemblGenomes	N/A	IEA
KOG2167	KOG	Cullins	JGI	N/A	IEA
PTHR11932	Panther	CULLIN	JGI	N/A	IEA
PTHR11932:SF53	Panther		JGI	N/A	IEA
PF00888	PFAM	Cullin family	JGI	N/A	IEA
PF10557	PFAM	Cullin protein neddylation domain	JGI	N/A	IEA

Expression Patterns of Glyma.05g140800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g140800 not represented in the dataset	Glyma.05g140800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.05g140800

Paralog	Evidence	Comments
Glyma.08g096100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g140800 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma05g27240	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.05g140800

Limit To All Plant Sequences

>Glyma.05g140800.2 sequence-type=transcript locus=Glyma.05g140800 ID=Glyma.05g140800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
gtgagttggaggccatggtttctaatcttggaaacagcgtcccctcttgaggtagttaggctgcatgtgtccatcttccctagaccTCACTTGGTATACCAACATTGCCCCCAAATTTTGAGGAGGATACATGGGCAAAATTGAAGTCAGCTATTGGTGCTATATTCTTGAAGCAACCTGTTTCTTGTGACTTGGAGAATCTTTATCAGGCTGTGAATGATCTTTGCCTTTACAAAATGGGGGGAAATCTTTATCAACGAATTGAAAAGGAGTGTGAAGCACATATATCTGCAGCACTGCAGTCTTTAGTTGGCCAAAGCCCAGATTTGATTGTTTTTCTATCGCTAGTTGAGAGATGTTGGCAGGATCTTTGTGACCAAATGTTGATGATTCGTGGTATAGCCTTGTTTCTGGATAGGACGTATGTGAAACAAACAACAAATGTACAGTCATTATGGGACATGGGTTTGCAACTTTTCTGCAAATATCTTTCTCTATCTCCAGAAGTAGAACATAAAACTGTTACTGGTCTTCTTCGTATGATCGGAAGTGAAAGATCAGGTGAATCAGTGGATAGAACTCTTCTAAATCATCTTTTGAAGATGTTTACTGCTCTGGGAATTTATGCAGAAACCTTTGAGAAGCCATTCCTTGAGTGCACATCCGAATTTTATGCTGCTGAAGGTATGAAATACATGCAGCAATCAGATGCTCCAGATTACTTGAAGCATGTTGAGACAAGATTGCAAGAGGAACATGAAAGATGTTTGTTGTACTTGGATGCAAGTACTAGGAAACCATTGATAGCAACTGCGGAAAAGCAACTTCTTGAACGTCATATACCTGCCATTCTTGATAAGGGTTTTACTGTGCTTATGGATGGGAATCGTATTGAAGACCTTCAGAGAATGCACTCGCTCTTTTCAAGGGTCAATGCTCTTGAATCACTGAAGCAGGCCCTTAGTTCATACATCAGGAGAACTGGGCAGGGCATTGTTATGGATGAGGAGAAAGATAAAGATATGGTCTCATCCCTTCTTGAATTTAAGGCTTCTCTTGACACAATATGGGAAGAAAGCTTTTTCAAGAATGAAGCTTTCAGCAATTCAATTAAAGATGCATTTGAGTATCTTATCAATCTTCGTCAGAACCGACCTGCAGAGTTGATTGCCAAGTTTTTGGATGAGAAGCTTCGTGCAGGTAATAAGGGTACTTCTGAAGAGGAACTGGAGGCTACACTTGATAAAGTCCTGGTGTTATTCAGGTTCATTCAGGGCAAGGATGTATTTGAAGCATTCTATAAGAAAGATCTTGCTAAAAGACTGCTTTTAGGAAAGAGTGCTTCTATTGACGCTGAGAAATCTATGATCTCCAAGTTGAAGACTGAGTGTGGCAGCCAGTTCACAAACAAACTGGAAGGAATGTTTAAGGACATTGAATTATCAAAAGAAATAAATGATTCATTCAAACAGTCATCACAGGCGAGGTCAAAACTTGCATCAGGGATTGAAATGAGTGTTCATGTTTTAACTACAGGGCACTGGCCAACATATCCGCCCATGGATGTTAGACTTCCTCATGAATTGAATGTTTACCAGGATATTTTCAAAGAGTTCTATCTAAGCAAATACAGTGGAAGACGTCTGATGTGGCAAAATTCACTAGGTCATTGTGTCTTGAAGGCAGAGTTTCCCAAAGGAAGAAAGGAGTTGGCTGTGTCCCTATTTCAGACTGTTGTTCTAATGTTATTCAATGATGCTGAGAAGCTAAGTCTTCAAGATATCAAAGATGCTACTGGTATTGAGGACAAGGAACTCAGAAGGACTCTGCAATCACTAGCTTGTGGTAAAGTTCGTGTCCTACAAAAGATGCCCAAAGGAAGAGATGTGGAGGACGATGACTTATTTGTTTTTAATGATGGGTTTACAGCTCCTCTTTACCGTATAAAGGTGAATGCAATTCAATTGAAGGAGACAGTCGAGGAGAACACAAGCACCACCGAAAGAGTTTTCCATGACCGTCAATATCAGATTGATGCTGCTATTGTGAGGATAATGAAGACTAGAAAAGTGCTTAGTCACACCCTTCTTATTACTGAACTCTTCCAACAGCTGAAATTCCCAATAAAACCAGCTGATTTGAAAAAAAGGATTGAAAGCCTCATTGACAGGGAGTATCTAGAGAGGGACAAGAGCAATCCTCAAATATACAATTACCTCGCATAACATTTTCTGCTTTATTTTACATTTAAATTTTCTTTTGTAAATGACATGGGAGAGGGTTTGATGTTTAATCCCTTGTCATATGTACAGTAAGCATGAATGATTCCTTTTTTGATATTTTCCACCCTTTCATTGACGGGAACTGTACTGTAATTATAAAACATGTTTATTCTCTTTTAAGTTTTACTATTTTCTTCCAATTAGAAGTTACTGACCCAAACCCATACACAAACATTTGGATAAAATTTAATGATAAATATTAGAAGTTATTAGTCACATTACCACTT

Coding sequences of Glyma.05g140800

Limit To All Plant Sequences

>Glyma.05g140800.1 sequence-type=CDS polypeptide=Glyma.05g140800.1.p locus=Glyma.05g140800 ID=Glyma.05g140800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTAATACGAAACTGTCACCGCCTATGAAGAAGGCGAAATCTATCGACTCCAAGAACGACGACGCCGTTTTGAAATCCCCCGCCGCCGCTTCCGATGACCCCAATGCGCCCGCTCTCGTCGCCGCCAATCTGTCTCGCAAAAAAGCCACTCCTCCCCATCCCCCCAAGAAGCTCCTCATTAAGTTCCACAAAGGTATACCAACATTGCCCCCAAATTTTGAGGAGGATACATGGGCAAAATTGAAGTCAGCTATTGGTGCTATATTCTTGAAGCAACCTGTTTCTTGTGACTTGGAGAATCTTTATCAGGCTGTGAATGATCTTTGCCTTTACAAAATGGGGGGAAATCTTTATCAACGAATTGAAAAGGAGTGTGAAGCACATATATCTGCAGCACTGCAGTCTTTAGTTGGCCAAAGCCCAGATTTGATTGTTTTTCTATCGCTAGTTGAGAGATGTTGGCAGGATCTTTGTGACCAAATGTTGATGATTCGTGGTATAGCCTTGTTTCTGGATAGGACGTATGTGAAACAAACAACAAATGTACAGTCATTATGGGACATGGGTTTGCAACTTTTCTGCAAATATCTTTCTCTATCTCCAGAAGTAGAACATAAAACTGTTACTGGTCTTCTTCGTATGATCGGAAGTGAAAGATCAGGTGAATCAGTGGATAGAACTCTTCTAAATCATCTTTTGAAGATGTTTACTGCTCTGGGAATTTATGCAGAAACCTTTGAGAAGCCATTCCTTGAGTGCACATCCGAATTTTATGCTGCTGAAGGTATGAAATACATGCAGCAATCAGATGCTCCAGATTACTTGAAGCATGTTGAGACAAGATTGCAAGAGGAACATGAAAGATGTTTGTTGTACTTGGATGCAAGTACTAGGAAACCATTGATAGCAACTGCGGAAAAGCAACTTCTTGAACGTCATATACCTGCCATTCTTGATAAGGGTTTTACTGTGCTTATGGATGGGAATCGTATTGAAGACCTTCAGAGAATGCACTCGCTCTTTTCAAGGGTCAATGCTCTTGAATCACTGAAGCAGGCCCTTAGTTCATACATCAGGAGAACTGGGCAGGGCATTGTTATGGATGAGGAGAAAGATAAAGATATGGTCTCATCCCTTCTTGAATTTAAGGCTTCTCTTGACACAATATGGGAAGAAAGCTTTTTCAAGAATGAAGCTTTCAGCAATTCAATTAAAGATGCATTTGAGTATCTTATCAATCTTCGTCAGAACCGACCTGCAGAGTTGATTGCCAAGTTTTTGGATGAGAAGCTTCGTGCAGGTAATAAGGGTACTTCTGAAGAGGAACTGGAGGCTACACTTGATAAAGTCCTGGTGTTATTCAGGTTCATTCAGGGCAAGGATGTATTTGAAGCATTCTATAAGAAAGATCTTGCTAAAAGACTGCTTTTAGGAAAGAGTGCTTCTATTGACGCTGAGAAATCTATGATCTCCAAGTTGAAGACTGAGTGTGGCAGCCAGTTCACAAACAAACTGGAAGGAATGTTTAAGGACATTGAATTATCAAAAGAAATAAATGATTCATTCAAACAGTCATCACAGGCGAGGTCAAAACTTGCATCAGGGATTGAAATGAGTGTTCATGTTTTAACTACAGGGCACTGGCCAACATATCCGCCCATGGATGTTAGACTTCCTCATGAATTGAATGTTTACCAGGATATTTTCAAAGAGTTCTATCTAAGCAAATACAGTGGAAGACGTCTGATGTGGCAAAATTCACTAGGTCATTGTGTCTTGAAGGCAGAGTTTCCCAAAGGAAGAAAGGAGTTGGCTGTGTCCCTATTTCAGACTGTTGTTCTAATGTTATTCAATGATGCTGAGAAGCTAAGTCTTCAAGATATCAAAGATGCTACTGGTATTGAGGACAAGGAACTCAGAAGGACTCTGCAATCACTAGCTTGTGGTAAAGTTCGTGTCCTACAAAAGATGCCCAAAGGAAGAGATGTGGAGGACGATGACTTATTTGTTTTTAATGATGGGTTTACAGCTCCTCTTTACCGTATAAAGGTGAATGCAATTCAATTGAAGGAGACAGTCGAGGAGAACACAAGCACCACCGAAAGAGTTTTCCATGACCGTCAATATCAGATTGATGCTGCTATTGTGAGGATAATGAAGACTAGAAAAGTGCTTAGTCACACCCTTCTTATTACTGAACTCTTCCAACAGCTGAAATTCCCAATAAAACCAGCTGATTTGAAAAAAAGGATTGAAAGCCTCATTGACAGGGAGTATCTAGAGAGGGACAAGAGCAATCCTCAAATATACAATTACCTCGCATAA

>Glyma.05g140800.2 sequence-type=CDS polypeptide=Glyma.05g140800.2.p locus=Glyma.05g140800 ID=Glyma.05g140800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGGGAAATCTTTATCAACGAATTGAAAAGGAGTGTGAAGCACATATATCTGCAGCACTGCAGTCTTTAGTTGGCCAAAGCCCAGATTTGATTGTTTTTCTATCGCTAGTTGAGAGATGTTGGCAGGATCTTTGTGACCAAATGTTGATGATTCGTGGTATAGCCTTGTTTCTGGATAGGACGTATGTGAAACAAACAACAAATGTACAGTCATTATGGGACATGGGTTTGCAACTTTTCTGCAAATATCTTTCTCTATCTCCAGAAGTAGAACATAAAACTGTTACTGGTCTTCTTCGTATGATCGGAAGTGAAAGATCAGGTGAATCAGTGGATAGAACTCTTCTAAATCATCTTTTGAAGATGTTTACTGCTCTGGGAATTTATGCAGAAACCTTTGAGAAGCCATTCCTTGAGTGCACATCCGAATTTTATGCTGCTGAAGGTATGAAATACATGCAGCAATCAGATGCTCCAGATTACTTGAAGCATGTTGAGACAAGATTGCAAGAGGAACATGAAAGATGTTTGTTGTACTTGGATGCAAGTACTAGGAAACCATTGATAGCAACTGCGGAAAAGCAACTTCTTGAACGTCATATACCTGCCATTCTTGATAAGGGTTTTACTGTGCTTATGGATGGGAATCGTATTGAAGACCTTCAGAGAATGCACTCGCTCTTTTCAAGGGTCAATGCTCTTGAATCACTGAAGCAGGCCCTTAGTTCATACATCAGGAGAACTGGGCAGGGCATTGTTATGGATGAGGAGAAAGATAAAGATATGGTCTCATCCCTTCTTGAATTTAAGGCTTCTCTTGACACAATATGGGAAGAAAGCTTTTTCAAGAATGAAGCTTTCAGCAATTCAATTAAAGATGCATTTGAGTATCTTATCAATCTTCGTCAGAACCGACCTGCAGAGTTGATTGCCAAGTTTTTGGATGAGAAGCTTCGTGCAGGTAATAAGGGTACTTCTGAAGAGGAACTGGAGGCTACACTTGATAAAGTCCTGGTGTTATTCAGGTTCATTCAGGGCAAGGATGTATTTGAAGCATTCTATAAGAAAGATCTTGCTAAAAGACTGCTTTTAGGAAAGAGTGCTTCTATTGACGCTGAGAAATCTATGATCTCCAAGTTGAAGACTGAGTGTGGCAGCCAGTTCACAAACAAACTGGAAGGAATGTTTAAGGACATTGAATTATCAAAAGAAATAAATGATTCATTCAAACAGTCATCACAGGCGAGGTCAAAACTTGCATCAGGGATTGAAATGAGTGTTCATGTTTTAACTACAGGGCACTGGCCAACATATCCGCCCATGGATGTTAGACTTCCTCATGAATTGAATGTTTACCAGGATATTTTCAAAGAGTTCTATCTAAGCAAATACAGTGGAAGACGTCTGATGTGGCAAAATTCACTAGGTCATTGTGTCTTGAAGGCAGAGTTTCCCAAAGGAAGAAAGGAGTTGGCTGTGTCCCTATTTCAGACTGTTGTTCTAATGTTATTCAATGATGCTGAGAAGCTAAGTCTTCAAGATATCAAAGATGCTACTGGTATTGAGGACAAGGAACTCAGAAGGACTCTGCAATCACTAGCTTGTGGTAAAGTTCGTGTCCTACAAAAGATGCCCAAAGGAAGAGATGTGGAGGACGATGACTTATTTGTTTTTAATGATGGGTTTACAGCTCCTCTTTACCGTATAAAGGTGAATGCAATTCAATTGAAGGAGACAGTCGAGGAGAACACAAGCACCACCGAAAGAGTTTTCCATGACCGTCAATATCAGATTGATGCTGCTATTGTGAGGATAATGAAGACTAGAAAAGTGCTTAGTCACACCCTTCTTATTACTGAACTCTTCCAACAGCTGAAATTCCCAATAAAACCAGCTGATTTGAAAAAAAGGATTGAAAGCCTCATTGACAGGGAGTATCTAGAGAGGGACAAGAGCAATCCTCAAATATACAATTACCTCGCATAA

Predicted protein sequences of Glyma.05g140800

Limit To All Plant Sequences

>Glyma.05g140800.1.p sequence-type=predicted peptide transcript=Glyma.05g140800.1 locus=Glyma.05g140800 ID=Glyma.05g140800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSNTKLSPPMKKAKSIDSKNDDAVLKSPAAASDDPNAPALVAANLSRKKATPPHPPKKLLIKFHKGIPTLPPNFEEDTWAKLKSAIGAIFLKQPVSCDLENLYQAVNDLCLYKMGGNLYQRIEKECEAHISAALQSLVGQSPDLIVFLSLVERCWQDLCDQMLMIRGIALFLDRTYVKQTTNVQSLWDMGLQLFCKYLSLSPEVEHKTVTGLLRMIGSERSGESVDRTLLNHLLKMFTALGIYAETFEKPFLECTSEFYAAEGMKYMQQSDAPDYLKHVETRLQEEHERCLLYLDASTRKPLIATAEKQLLERHIPAILDKGFTVLMDGNRIEDLQRMHSLFSRVNALESLKQALSSYIRRTGQGIVMDEEKDKDMVSSLLEFKASLDTIWEESFFKNEAFSNSIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEATLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINDSFKQSSQARSKLASGIEMSVHVLTTGHWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGRKELAVSLFQTVVLMLFNDAEKLSLQDIKDATGIEDKELRRTLQSLACGKVRVLQKMPKGRDVEDDDLFVFNDGFTAPLYRIKVNAIQLKETVEENTSTTERVFHDRQYQIDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKSNPQIYNYLA*

>Glyma.05g140800.2.p sequence-type=predicted peptide transcript=Glyma.05g140800.2 locus=Glyma.05g140800 ID=Glyma.05g140800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGGNLYQRIEKECEAHISAALQSLVGQSPDLIVFLSLVERCWQDLCDQMLMIRGIALFLDRTYVKQTTNVQSLWDMGLQLFCKYLSLSPEVEHKTVTGLLRMIGSERSGESVDRTLLNHLLKMFTALGIYAETFEKPFLECTSEFYAAEGMKYMQQSDAPDYLKHVETRLQEEHERCLLYLDASTRKPLIATAEKQLLERHIPAILDKGFTVLMDGNRIEDLQRMHSLFSRVNALESLKQALSSYIRRTGQGIVMDEEKDKDMVSSLLEFKASLDTIWEESFFKNEAFSNSIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEATLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINDSFKQSSQARSKLASGIEMSVHVLTTGHWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGRKELAVSLFQTVVLMLFNDAEKLSLQDIKDATGIEDKELRRTLQSLACGKVRVLQKMPKGRDVEDDDLFVFNDGFTAPLYRIKVNAIQLKETVEENTSTTERVFHDRQYQIDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKSNPQIYNYLA*

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