Glyma.05g139300

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Report for Sequence Feature Glyma.05g139300

Feature Type:	gene_model
Chromosome:	Gm05
Start:	33182337
stop:	33186879
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.05g139300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G18270.1	AT	cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene	JGI	N/A	IEA
GO:0046872	GO-mf	metal ion binding	EnsemblGenomes	N/A	IEA
PTHR13794	Panther	ENOLASE SUPERFAMILY, MANDELATE RACEMASE	JGI	N/A	IEA
PTHR13794:SF13	Panther	SUBFAMILY NOT NAMED	JGI	N/A	IEA
PF01188	PFAM	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain	JGI	N/A	IEA
PF02746	PFAM	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain	JGI	N/A	IEA
GN7V-67585	SoyCyc9-rxn	L-Ala-D/L-Glu epimerase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.05g139300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g139300 not represented in the dataset	Glyma.05g139300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.05g139300

Paralog	Evidence	Comments
Glyma.08g094600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g139300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma05g27030	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.05g139300

Limit To All Plant Sequences

>Glyma.05g139300.2 sequence-type=transcript locus=Glyma.05g139300 ID=Glyma.05g139300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAAGAAAAGACAACAACATAGCAGTCTTAGGATCCAACATGTCTCAAACACTAAGCTGCAGAAGACTACACCCAATGGACTCAACTTTGATGAAGTCAATGTCCCACAATCCAAAAAAGTCCTATTCTACCGCATTCACAAGGCACTTTGCCAAAAAATCTGGTTTTTTGATCAAGATCATGGCTTCTGCTACACCTACAGCAGCTGCTATCACCTTTGGATTCAAGAATTTGTTGGAAACATTCACTGTTGATGTGCATAGAGCAGAGAACAGGCCACTGAATGTGCCCCTAATAGCACCTTTTACCATTGCTACCTCTAGATTGGACAAGGTGGAGAACGTGGCCATAAGGGTTGAGTTGAGCAACGGTGCGGTGGGGTGGGGTGAGGCACCAATTTTGCCTTTTGTTACTGCAGAGGACCAAACCACTGCCATGGTCAAGGCTTCTGAGGCATGTGCCTTCTTGAGGAAATGTCCAGCACTCACTTTGGGTTCCATGTTGGGGGAGATTGCTGGTATTCTTCCAGGGCATCAATTTGCTTCAGCTAGGGCCGGGATTGAGATGGCAATAATTGATGCTGTTGCAAATAGTATTCGTGTGCCACTGTGGAGGCTTTTTGGTGGGGCTTCAAATACCATAACCACTGATATTACAATCCCAATTGTTTCTCCAGCTGAAGCAGCTGAATTGGCTTCTAAGTACTATAAAGAAGGATTTAAGACTTTAAAGCTGAAAGTGGGCAAGAATCTGAATGCAGATATAGAAGTGCTTCAAGCTATACGTGTTGCACACCCTAAGTGTCAGTTTATTCTTGATGCTAATGAGGGGTATAACTCTGAGGAAGCAGTGGATGTTCTTGAGAAACTACATGATATGGGGTTGACTCCTGTTCTATTTGAGCAACCAGTTCATAGAGATGATTGGGATGGTCTTCGGTATGTCGGTAATATAGCAAGAGAGAGATATGGAGTATCTGTTGCAGCTGATGAGAGTTGCAGAAGTATAATTGATGTTTACAAAATTGTGGAAGGGAATGTTTTAGATGTCATTAACATTAAGCTTGCCAAAGTTGGGGTTATGGGTGCCCTTGAAATTATTGAAAAGGCAAAAGCAGCAGGATTAGATTTGATGATTGGTGGTATGGTTGAGACTAGACTTGCTATGGGTTTTGCTGGCCAACTTGCTGCTGGCCTTGGCTGTTTTAAGTTCATTGACTTAGACACACCACTTCTGCTGTCAGATGATCCAGTTCTTGAAGGCTATGAAGTTTCAGGTGCCACTTATAAGTTCACAAACGCTAGGGGACATGGTGGATTTCTTCACTGGGACAACCTTGCTTAATGCTAGAGATGTTTATGACAACACAAGAATCTGGAAAAGCATAAATGGACAAGTTGGTTAAAAAATTGCCTAATTAAGGTGTGAAACTATGGTTACAACAACAACCATACATGAAGATTTCTTGTCCGGAATGAGTAGCCAGTACCTATCCACAATTGCTATGTATTTAACTTTTTCGATTCCTCACCATATATTCTGTAAAAGAAACTGCCTTCGAGGTCTTGCACCAAATAGTAACTAGTTGCTACTTGCTAAAAGCTAGGAACCGCatatgatatgagatatggatataatatgatatgGACATGGAAATATAGCAAAAAAATTTAAAAAATAGGCTTAATTATTGAACTTTTGGTTTCTAC

>Glyma.05g139300.3 sequence-type=transcript locus=Glyma.05g139300 ID=Glyma.05g139300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAAGAAAAGACAACAACATAGCAGCTAACATTAACATAGACTTGTTCACAACAACCCAATCATATGCTGCCAGTCTTAGGATCCAACATGTCTCAAACACTAAGCTGCAGAAGACTACACCCAATGGACTCAACTTTGATGAAGTCAATGTCCCACAATCCAAAAAAGTCCTATTCTACCGCATTCACAAGGCACTTTGCCAAAAAATCTGGTTTTTTGATCAAGATCATGGCTTCTGCTACACCTACAGCAGCTGCTATCACCTTTGGATTCAAGAATTTGTTGGAAACATTCACTGTTGATGTGCATAGAGCAGAGAACAGGCCACTGAATGTGCCCCTAATAGCACCTTTTACCATTGCTACCTCTAGATTGGACAAGGTGGAGAACGTGGCCATAAGGGTTGAGTTGAGCAACGGTGCGGTGGGGTGGGGTGAGGCACCAATTTTGCCTTTTGTTACTGCAGAGGACCAAACCACTGCCATGGTCAAGGCTTCTGAGGCATGTGCCTTCTTGAGGAAATGTCCAGCACTCACTTTGGGTTCCATGTTGGGGGAGATTGCTGGTATTCTTCCAGGGCATCAATTTGCTTCAGCTAGGGCCGGGATTGAGATGGCAATAATTGATGCTGTTGCAAATAGTATTCGTGTGCCACTGTGGAGGCTTTTTGGTGGGGCTTCAAATACCATAACCACTGATATTACAATCCCAATTGTTTCTCCAGCTGAAGCAGCTGAATTGGCTTCTAAGTACTATAAAGAAGGATTTAAGACTTTAAAGCTGAAAGTGGGCAAGAATCTGAATGCAGATATAGAAGTGCTTCAAGCTATACGTGTTGCACACCCTAAGTGTCAGTTTATTCTTGATGCTAATGAGGGGTATAACTCTGAGGAAGCAGTGGATGTTCTTGAGAAACTACATGATATGGGGTTGACTCCTGTTCTATTTGAGCAACCAGTTCATAGAGATGATTGGGATGGTCTTCGGTATGTCGGTAATATAGCAAGAGAGAGATATGGAGTATCTGTTGCAGCTGATGAGAGTTGCAGAAGTATAATTGATGTTTACAAAATTGTGGAAGGGAATGTTTTAGATGTCATTAACATTAAGCTTGCCAAAGTTGGGGTTATGGGTGCCCTTGAAATTATTGAAAAGGCAAAAGCAGCAGGATTAGATTTGATGATTGGTGGTATGGTTGAGACTAGACTTGCTATGGGTTTTGCTGGCCAACTTGCTGCTGGCCTTGGCTGTTTTAAGTTCATTGACTTAGACACACCACTTCTGCTGTCAGATGATCCAGTTCTTGAAGGCTATGAAGTTTCAGGTGCCACTTATAAGTTCACAAACGCTAGGGGACATGGTGGATTTCTTCACTGGGACAACCTTGCTTAATGCTAGAGATGTTTATGACAACACAAGAATCTGGAAAAGCATAAATGGACAAGTTGGTTAAAAAATTGCCTAATTAAGGTGTGAAACTATGGTTACAACAACAACCATACATGAAGATTTCTTGTCCGGAATGAGTAGCCAGTACCTATCCACAATTGCTATGTATTTAACTTTTTCGATTCCTCACCATATATTCTGTAAAAGAAACTGCCTTCGAGGTCTTGCACCAAATAGTAACTAGTTGCTACTTGCTAAAAGCTAGGAACCGCatatgatatgagatatggatataatatgatatgGACATGGAAATATAGCAAAAAAATTTAAAAAATAGGCTTAATTATTGAACTTTTGGTTTCTAC

Coding sequences of Glyma.05g139300

Limit To All Plant Sequences

>Glyma.05g139300.1 sequence-type=CDS polypeptide=Glyma.05g139300.1.p locus=Glyma.05g139300 ID=Glyma.05g139300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTGCCAGTCTTAGGATCCAACATGTCTCAAACACTAAGCTGCAGAAGACTACACCCAATGGACTCAACTTTGATGAAGTCAATGTCCCACAATCCAAAAAAGTCCTATTCTACCGCATTCACAAGGCACTTTGCCAAAAAATCTGGTTTTTTGATCAAGATCATGGCTTCTGCTACACCTACAGCAGCTGCTATCACCTTTGGATTCAAGAATTTGTTGGAAACATTCACTGTTGATGTGCATAGAGCAGAGAACAGGCCACTGAATGTGCCCCTAATAGCACCTTTTACCATTGCTACCTCTAGATTGGACAAGGTGGAGAACGTGGCCATAAGGGTTGAGTTGAGCAACGGTGCGGTGGGGTGGGGTGAGGCACCAATTTTGCCTTTTGTTACTGCAGAGGACCAAACCACTGCCATGGTCAAGGCTTCTGAGGCATGTGCCTTCTTGAGGAAATGTCCAGCACTCACTTTGGGTTCCATGTTGGGGGAGATTGCTGGTATTCTTCCAGGGCATCAATTTGCTTCAGCTAGGGCCGGGATTGAGATGGCAATAATTGATGCTGTTGCAAATAGTATTCGTGTGCCACTGTGGAGGCTTTTTGGTGGGGCTTCAAATACCATAACCACTGATATTACAATCCCAATTGTTTCTCCAGCTGAAGCAGCTGAATTGGCTTCTAAGTACTATAAAGAAGGATTTAAGACTTTAAAGCTGAAAGTGGGCAAGAATCTGAATGCAGATATAGAAGTGCTTCAAGCTATACGTGTTGCACACCCTAAGTGTCAGTTTATTCTTGATGCTAATGAGGGGTATAACTCTGAGGAAGCAGTGGATGTTCTTGAGAAACTACATGATATGGGGTTGACTCCTGTTCTATTTGAGCAACCAGTTCATAGAGATGATTGGGATGGTCTTCGGTATGTCGGTAATATAGCAAGAGAGAGATATGGAGTATCTGTTGCAGCTGATGAGAGTTGCAGAAGTATAATTGATGTTTACAAAATTGTGGAAGGGAATGTTTTAGATGTCATTAACATTAAGCTTGCCAAAGTTGGGGTTATGGGTGCCCTTGAAATTATTGAAAAGGCAAAAGCAGCAGGATTAGATTTGATGATTGGTGGTATGGTTGAGACTAGACTTGCTATGGGTTTTGCTGGCCAACTTGCTGCTGGCCTTGGCTGTTTTAAGTTCATTGACTTAGACACACCACTTCTGCTGTCAGATGATCCAGTTCTTGAAGGCTATGAAGTTTCAGGTGCCACTTATAAGTTCACAAACGCTAGGGGACATGGTGGATTTCTTCACTGGGACAACCTTGCTTAA

>Glyma.05g139300.2 sequence-type=CDS polypeptide=Glyma.05g139300.2.p locus=Glyma.05g139300 ID=Glyma.05g139300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTCAAACACTAAGCTGCAGAAGACTACACCCAATGGACTCAACTTTGATGAAGTCAATGTCCCACAATCCAAAAAAGTCCTATTCTACCGCATTCACAAGGCACTTTGCCAAAAAATCTGGTTTTTTGATCAAGATCATGGCTTCTGCTACACCTACAGCAGCTGCTATCACCTTTGGATTCAAGAATTTGTTGGAAACATTCACTGTTGATGTGCATAGAGCAGAGAACAGGCCACTGAATGTGCCCCTAATAGCACCTTTTACCATTGCTACCTCTAGATTGGACAAGGTGGAGAACGTGGCCATAAGGGTTGAGTTGAGCAACGGTGCGGTGGGGTGGGGTGAGGCACCAATTTTGCCTTTTGTTACTGCAGAGGACCAAACCACTGCCATGGTCAAGGCTTCTGAGGCATGTGCCTTCTTGAGGAAATGTCCAGCACTCACTTTGGGTTCCATGTTGGGGGAGATTGCTGGTATTCTTCCAGGGCATCAATTTGCTTCAGCTAGGGCCGGGATTGAGATGGCAATAATTGATGCTGTTGCAAATAGTATTCGTGTGCCACTGTGGAGGCTTTTTGGTGGGGCTTCAAATACCATAACCACTGATATTACAATCCCAATTGTTTCTCCAGCTGAAGCAGCTGAATTGGCTTCTAAGTACTATAAAGAAGGATTTAAGACTTTAAAGCTGAAAGTGGGCAAGAATCTGAATGCAGATATAGAAGTGCTTCAAGCTATACGTGTTGCACACCCTAAGTGTCAGTTTATTCTTGATGCTAATGAGGGGTATAACTCTGAGGAAGCAGTGGATGTTCTTGAGAAACTACATGATATGGGGTTGACTCCTGTTCTATTTGAGCAACCAGTTCATAGAGATGATTGGGATGGTCTTCGGTATGTCGGTAATATAGCAAGAGAGAGATATGGAGTATCTGTTGCAGCTGATGAGAGTTGCAGAAGTATAATTGATGTTTACAAAATTGTGGAAGGGAATGTTTTAGATGTCATTAACATTAAGCTTGCCAAAGTTGGGGTTATGGGTGCCCTTGAAATTATTGAAAAGGCAAAAGCAGCAGGATTAGATTTGATGATTGGTGGTATGGTTGAGACTAGACTTGCTATGGGTTTTGCTGGCCAACTTGCTGCTGGCCTTGGCTGTTTTAAGTTCATTGACTTAGACACACCACTTCTGCTGTCAGATGATCCAGTTCTTGAAGGCTATGAAGTTTCAGGTGCCACTTATAAGTTCACAAACGCTAGGGGACATGGTGGATTTCTTCACTGGGACAACCTTGCTTAA

>Glyma.05g139300.3 sequence-type=CDS polypeptide=Glyma.05g139300.3.p locus=Glyma.05g139300 ID=Glyma.05g139300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTGCCAGTCTTAGGATCCAACATGTCTCAAACACTAAGCTGCAGAAGACTACACCCAATGGACTCAACTTTGATGAAGTCAATGTCCCACAATCCAAAAAAGTCCTATTCTACCGCATTCACAAGGCACTTTGCCAAAAAATCTGGTTTTTTGATCAAGATCATGGCTTCTGCTACACCTACAGCAGCTGCTATCACCTTTGGATTCAAGAATTTGTTGGAAACATTCACTGTTGATGTGCATAGAGCAGAGAACAGGCCACTGAATGTGCCCCTAATAGCACCTTTTACCATTGCTACCTCTAGATTGGACAAGGTGGAGAACGTGGCCATAAGGGTTGAGTTGAGCAACGGTGCGGTGGGGTGGGGTGAGGCACCAATTTTGCCTTTTGTTACTGCAGAGGACCAAACCACTGCCATGGTCAAGGCTTCTGAGGCATGTGCCTTCTTGAGGAAATGTCCAGCACTCACTTTGGGTTCCATGTTGGGGGAGATTGCTGGTATTCTTCCAGGGCATCAATTTGCTTCAGCTAGGGCCGGGATTGAGATGGCAATAATTGATGCTGTTGCAAATAGTATTCGTGTGCCACTGTGGAGGCTTTTTGGTGGGGCTTCAAATACCATAACCACTGATATTACAATCCCAATTGTTTCTCCAGCTGAAGCAGCTGAATTGGCTTCTAAGTACTATAAAGAAGGATTTAAGACTTTAAAGCTGAAAGTGGGCAAGAATCTGAATGCAGATATAGAAGTGCTTCAAGCTATACGTGTTGCACACCCTAAGTGTCAGTTTATTCTTGATGCTAATGAGGGGTATAACTCTGAGGAAGCAGTGGATGTTCTTGAGAAACTACATGATATGGGGTTGACTCCTGTTCTATTTGAGCAACCAGTTCATAGAGATGATTGGGATGGTCTTCGGTATGTCGGTAATATAGCAAGAGAGAGATATGGAGTATCTGTTGCAGCTGATGAGAGTTGCAGAAGTATAATTGATGTTTACAAAATTGTGGAAGGGAATGTTTTAGATGTCATTAACATTAAGCTTGCCAAAGTTGGGGTTATGGGTGCCCTTGAAATTATTGAAAAGGCAAAAGCAGCAGGATTAGATTTGATGATTGGTGGTATGGTTGAGACTAGACTTGCTATGGGTTTTGCTGGCCAACTTGCTGCTGGCCTTGGCTGTTTTAAGTTCATTGACTTAGACACACCACTTCTGCTGTCAGATGATCCAGTTCTTGAAGGCTATGAAGTTTCAGGTGCCACTTATAAGTTCACAAACGCTAGGGGACATGGTGGATTTCTTCACTGGGACAACCTTGCTTAA

Predicted protein sequences of Glyma.05g139300

Limit To All Plant Sequences

>Glyma.05g139300.1.p sequence-type=predicted peptide transcript=Glyma.05g139300.1 locus=Glyma.05g139300 ID=Glyma.05g139300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLPVLGSNMSQTLSCRRLHPMDSTLMKSMSHNPKKSYSTAFTRHFAKKSGFLIKIMASATPTAAAITFGFKNLLETFTVDVHRAENRPLNVPLIAPFTIATSRLDKVENVAIRVELSNGAVGWGEAPILPFVTAEDQTTAMVKASEACAFLRKCPALTLGSMLGEIAGILPGHQFASARAGIEMAIIDAVANSIRVPLWRLFGGASNTITTDITIPIVSPAEAAELASKYYKEGFKTLKLKVGKNLNADIEVLQAIRVAHPKCQFILDANEGYNSEEAVDVLEKLHDMGLTPVLFEQPVHRDDWDGLRYVGNIARERYGVSVAADESCRSIIDVYKIVEGNVLDVINIKLAKVGVMGALEIIEKAKAAGLDLMIGGMVETRLAMGFAGQLAAGLGCFKFIDLDTPLLLSDDPVLEGYEVSGATYKFTNARGHGGFLHWDNLA*

>Glyma.05g139300.2.p sequence-type=predicted peptide transcript=Glyma.05g139300.2 locus=Glyma.05g139300 ID=Glyma.05g139300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSQTLSCRRLHPMDSTLMKSMSHNPKKSYSTAFTRHFAKKSGFLIKIMASATPTAAAITFGFKNLLETFTVDVHRAENRPLNVPLIAPFTIATSRLDKVENVAIRVELSNGAVGWGEAPILPFVTAEDQTTAMVKASEACAFLRKCPALTLGSMLGEIAGILPGHQFASARAGIEMAIIDAVANSIRVPLWRLFGGASNTITTDITIPIVSPAEAAELASKYYKEGFKTLKLKVGKNLNADIEVLQAIRVAHPKCQFILDANEGYNSEEAVDVLEKLHDMGLTPVLFEQPVHRDDWDGLRYVGNIARERYGVSVAADESCRSIIDVYKIVEGNVLDVINIKLAKVGVMGALEIIEKAKAAGLDLMIGGMVETRLAMGFAGQLAAGLGCFKFIDLDTPLLLSDDPVLEGYEVSGATYKFTNARGHGGFLHWDNLA*

>Glyma.05g139300.3.p sequence-type=predicted peptide transcript=Glyma.05g139300.3 locus=Glyma.05g139300 ID=Glyma.05g139300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLPVLGSNMSQTLSCRRLHPMDSTLMKSMSHNPKKSYSTAFTRHFAKKSGFLIKIMASATPTAAAITFGFKNLLETFTVDVHRAENRPLNVPLIAPFTIATSRLDKVENVAIRVELSNGAVGWGEAPILPFVTAEDQTTAMVKASEACAFLRKCPALTLGSMLGEIAGILPGHQFASARAGIEMAIIDAVANSIRVPLWRLFGGASNTITTDITIPIVSPAEAAELASKYYKEGFKTLKLKVGKNLNADIEVLQAIRVAHPKCQFILDANEGYNSEEAVDVLEKLHDMGLTPVLFEQPVHRDDWDGLRYVGNIARERYGVSVAADESCRSIIDVYKIVEGNVLDVINIKLAKVGVMGALEIIEKAKAAGLDLMIGGMVETRLAMGFAGQLAAGLGCFKFIDLDTPLLLSDDPVLEGYEVSGATYKFTNARGHGGFLHWDNLA*

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