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Report for Sequence Feature Glyma.05g138400

Feature Type:gene_model
Chromosome:Gm05
Start:33079962
stop:33085524
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g138400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G14700.1AT purple acid phosphatase 3 JGI N/AIEA
AT2G01890.1AT purple acid phosphatase 8 JGI N/AIEA
GO:0016311GO-bp dephosphorylation EnsemblGenomesN/AIEA
GO:0003993GO-mf acid phosphatase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity JGI N/AIEA
KOG2679 KOG Purple (tartrate-resistant) acid phosphatase JGI N/AIEA
PTHR10161Panther TARTRATE-RESISTANT ACID PHOSPHATASE TYPE 5 JGI N/AIEA
PF00149PFAM Calcineurin-like phosphoesterase JGI N/AIEA
PWY-6348SoyCyc9 phosphate acquisition Plant Metabolic Network ISS
GN7V-40570SoyCyc9-rxn acid phosphatase Plant Metabolic Network ISS

Expression Patterns of Glyma.05g138400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g138400
ParalogEvidenceComments
Glyma.08g093600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g138400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g26930 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.05g138400
>Glyma.05g138400.2 sequence-type=transcript locus=Glyma.05g138400 ID=Glyma.05g138400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCATTTCTCTAAGATCTTATTAAGAAATTGAGACGCTAATGTACTCCATCTTACATTTACATTCTTCTACATTATTCACAAAAGAAAATCTATTATTTCCTCACATTTAGATGTGGCAGCTCCTGCTTTGTATCATGTTTAAGCTCGAGGGTTTAACATTGAACGGTTAATAGCGCATTTGACTCCAAAAATGTTGTATGCACATCTACTATAAAATGGGAATTGTGGGAGAGAAACTAGACATAGATTTTGTGATCTCCACTGGTGACAATTTTTACGAAGATGGACTAAAAGGGGTTGATGATCCAGCATTCTACCAATCATTCGTCGACATGTACACTGCCCCAAGCTTGCAAAAGACATGGTACACTGTTCTGGGTAACCATGACTACAGAGGTGATGTTGGGGCACAACTAAGTCCAATTCTAAAACAAAAAGATAGCAGATGGCTTTGCATGAGATCTTTTATTCTCGATGGAGAAATTGTGGAATTTTTCTTTGTGGACACCACTCCATTTGTAGAAGAGTACTTCACGGACCCAGGAGAGCATACCTATGACTGGGAAGGCGTTCTTCCTCGCCTAGCTTACCTTTCAGAACTCTTGAAGGATGTTGATTTAGCTTTGGCTCAATCAAAAGCAAAATGGAAGATGGTGGTGGGTCATCATACCATCAACAGTGCTGGGCATCATGGTAACACCGAAGAGCTTAAACAGCTACTTGTTCCCATCTTAGAGGCGAACGATGTTGATGCATACATAAATGGACATGACCACTGCTTGCAGCATATAATTGACAATAATAGTGGAATTCACTTTATAACAAGTGGAGGTGGATCAAAGGCATGGTCGGGCGATGTCAAGCCATGGAAACTGGAAGAACTGAAGTTGTATTATGATGGGCAAGGATTCATGTCTATGCAGATCACCAAAAGCAAAGCAGATATCATATTTTATGATGCCTTTGGCAAAGTTTTGCATACATGGAGCATATCCAAAGACCGTAACGTAGCAGCCTGGATATAATAAGCTAAAGTACACACATTACCGGCTCTATGTTATGAAAATGGAGGTCCCTCTGGCTGACAATTAGGGCAACTTAAAAATGTACTATTTGTAACAAAGAAAAGAAGAAAAAAGAACGTTTAGAGAAATTCTAATGTCCTTGCAGTAGCTGTAGTATGCACCCTAACTCGTGCTATAGAAGTTTCAGAAACAAAGGCATACACTACTTTGTAGTATTTGTAAGTACTTCTGTAAGtgatcattgagccttgaggcttgccctgaccctggtgagcccttgGGACCCAATCACATAAACTTTTCATTATCAAAAAAAAAAAAATGATGGATGGTCTGATTGTTCTACACATAACACATTGATAGTTTTCATCAATCAAATCTACTAAACTTATAATTATCTCTTTGTTCTCATGAATCTCTTCTTTTAAAAATAATAATAATATCTAACACTGGAAAAAGGATTCTCTCCATTGGATAAAGTGGAAAACTAAATTTCTAGTTAGTTTT
Coding sequences of Glyma.05g138400
>Glyma.05g138400.1 sequence-type=CDS polypeptide=Glyma.05g138400.1.p locus=Glyma.05g138400 ID=Glyma.05g138400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCATCTTTAAACCAACGCATGTTATTCCCTCTTATGTTCGTAATTGGTATGTTCTGCTTAATGGTAACTCCTTCTATTGCGGAACTTCCCATATTCAAACACCCTCCAAAAAAACAACAATCTCTTAATATATTGGTCCTTGGAGATTGGGGAAGAAAAGGAACCTACAATCAATCTTTGGTCGCCAATCAGATGGGAATTGTGGGAGAGAAACTAGACATAGATTTTGTGATCTCCACTGGTGACAATTTTTACGAAGATGGACTAAAAGGGGTTGATGATCCAGCATTCTACCAATCATTCGTCGACATGTACACTGCCCCAAGCTTGCAAAAGACATGGTACACTGTTCTGGGTAACCATGACTACAGAGGTGATGTTGGGGCACAACTAAGTCCAATTCTAAAACAAAAAGATAGCAGATGGCTTTGCATGAGATCTTTTATTCTCGATGGAGAAATTGTGGAATTTTTCTTTGTGGACACCACTCCATTTGTAGAAGAGTACTTCACGGACCCAGGAGAGCATACCTATGACTGGGAAGGCGTTCTTCCTCGCCTAGCTTACCTTTCAGAACTCTTGAAGGATGTTGATTTAGCTTTGGCTCAATCAAAAGCAAAATGGAAGATGGTGGTGGGTCATCATACCATCAACAGTGCTGGGCATCATGGTAACACCGAAGAGCTTAAACAGCTACTTGTTCCCATCTTAGAGGCGAACGATGTTGATGCATACATAAATGGACATGACCACTGCTTGCAGCATATAATTGACAATAATAGTGGAATTCACTTTATAACAAGTGGAGGTGGATCAAAGGCATGGTCGGGCGATGTCAAGCCATGGAAACTGGAAGAACTGAAGTTGTATTATGATGGGCAAGGATTCATGTCTATGCAGATCACCAAAAGCAAAGCAGATATCATATTTTATGATGCCTTTGGCAAAGTTTTGCATACATGGAGCATATCCAAAGACCGTAACGTAGCAGCCTGGATATAA

>Glyma.05g138400.2 sequence-type=CDS polypeptide=Glyma.05g138400.2.p locus=Glyma.05g138400 ID=Glyma.05g138400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCACATCTACTATAAAATGGGAATTGTGGGAGAGAAACTAGACATAGATTTTGTGATCTCCACTGGTGACAATTTTTACGAAGATGGACTAAAAGGGGTTGATGATCCAGCATTCTACCAATCATTCGTCGACATGTACACTGCCCCAAGCTTGCAAAAGACATGGTACACTGTTCTGGGTAACCATGACTACAGAGGTGATGTTGGGGCACAACTAAGTCCAATTCTAAAACAAAAAGATAGCAGATGGCTTTGCATGAGATCTTTTATTCTCGATGGAGAAATTGTGGAATTTTTCTTTGTGGACACCACTCCATTTGTAGAAGAGTACTTCACGGACCCAGGAGAGCATACCTATGACTGGGAAGGCGTTCTTCCTCGCCTAGCTTACCTTTCAGAACTCTTGAAGGATGTTGATTTAGCTTTGGCTCAATCAAAAGCAAAATGGAAGATGGTGGTGGGTCATCATACCATCAACAGTGCTGGGCATCATGGTAACACCGAAGAGCTTAAACAGCTACTTGTTCCCATCTTAGAGGCGAACGATGTTGATGCATACATAAATGGACATGACCACTGCTTGCAGCATATAATTGACAATAATAGTGGAATTCACTTTATAACAAGTGGAGGTGGATCAAAGGCATGGTCGGGCGATGTCAAGCCATGGAAACTGGAAGAACTGAAGTTGTATTATGATGGGCAAGGATTCATGTCTATGCAGATCACCAAAAGCAAAGCAGATATCATATTTTATGATGCCTTTGGCAAAGTTTTGCATACATGGAGCATATCCAAAGACCGTAACGTAGCAGCCTGGATATAA
Predicted protein sequences of Glyma.05g138400
>Glyma.05g138400.1.p sequence-type=predicted peptide transcript=Glyma.05g138400.1 locus=Glyma.05g138400 ID=Glyma.05g138400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASSLNQRMLFPLMFVIGMFCLMVTPSIAELPIFKHPPKKQQSLNILVLGDWGRKGTYNQSLVANQMGIVGEKLDIDFVISTGDNFYEDGLKGVDDPAFYQSFVDMYTAPSLQKTWYTVLGNHDYRGDVGAQLSPILKQKDSRWLCMRSFILDGEIVEFFFVDTTPFVEEYFTDPGEHTYDWEGVLPRLAYLSELLKDVDLALAQSKAKWKMVVGHHTINSAGHHGNTEELKQLLVPILEANDVDAYINGHDHCLQHIIDNNSGIHFITSGGGSKAWSGDVKPWKLEELKLYYDGQGFMSMQITKSKADIIFYDAFGKVLHTWSISKDRNVAAWI*

>Glyma.05g138400.2.p sequence-type=predicted peptide transcript=Glyma.05g138400.2 locus=Glyma.05g138400 ID=Glyma.05g138400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MHIYYKMGIVGEKLDIDFVISTGDNFYEDGLKGVDDPAFYQSFVDMYTAPSLQKTWYTVLGNHDYRGDVGAQLSPILKQKDSRWLCMRSFILDGEIVEFFFVDTTPFVEEYFTDPGEHTYDWEGVLPRLAYLSELLKDVDLALAQSKAKWKMVVGHHTINSAGHHGNTEELKQLLVPILEANDVDAYINGHDHCLQHIIDNNSGIHFITSGGGSKAWSGDVKPWKLEELKLYYDGQGFMSMQITKSKADIIFYDAFGKVLHTWSISKDRNVAAWI*






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