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Report for Sequence Feature Glyma.05g136100

Feature Type:gene_model
Chromosome:Gm05
Start:32845863
stop:32848516
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g136100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G02010.1AT glutamate decarboxylase 4 JGI N/AIEA
GO:0006536GO-bp glutamate metabolic process EnsemblGenomesN/AIEA
GO:0019752GO-bp carboxylic acid metabolic process EnsemblGenomesN/AIEA
GO:0019752GO-bp carboxylic acid metabolic process JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0004351GO-mf glutamate decarboxylase activity EnsemblGenomesN/AIEA
GO:0016829GO-mf lyase activity EnsemblGenomesN/AIEA
GO:0016831GO-mf carboxy-lyase activity EnsemblGenomesN/AIEA
GO:0016831GO-mf carboxy-lyase activity JGI N/AIEA
GO:0030170GO-mf pyridoxal phosphate binding EnsemblGenomesN/AIEA
GO:0030170GO-mf pyridoxal phosphate binding JGI N/AIEA
KOG1383 KOG Glutamate decarboxylase/sphingosine phosphate lyase JGI N/AIEA
PTHR11999Panther GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE JGI N/AIEA
PTHR11999:SF1Panther GLUTAMATE DECARBOXYLASE JGI N/AIEA
PF00282PFAM Pyridoxal-dependent decarboxylase conserved domain JGI N/AIEA
PWY-4321SoyCyc9 L-glutamate degradation IV Plant Metabolic Network ISS
GN7V-57590SoyCyc9-rxn glutamate decarboxylase Plant Metabolic Network ISS

Expression Patterns of Glyma.05g136100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g136100
ParalogEvidenceComments
Glyma.08g091500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g136100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g26660 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.05g136100
>Glyma.05g136100.2 sequence-type=transcript locus=Glyma.05g136100 ID=Glyma.05g136100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
aacatccaaacaaacctcaaaacaaacatcaTTAATTCTTTCTTTGCTGTCTTTAAGGTCAACAACAGATTATAACACATACCTCACAATGGTTTTTCCAAAACCCTCTTCTGAGTCTGACCTCTTTCTTTATTCCAACTTTGCTTCTCGCTATGCCAGGGACTCTCTTCCCAGGTTCAGCATGCCAGAAAACTCCATGCCAAAGGAGGCTGCGTACCAGAACATACACGATGAGTTGCAGCTTGATGCAATTCCAAAGCTGAACTTGGCTTCCTTTGTGACCACTTCCATGGAAGAAGAGTGCAACAAGCTCATCATGGAATCCATCAACAAGAACTATGTTGACATGGACGAGTATCCTGCCACCACCGACCTTCACAATCGGTGTGTGAACATGATTGCACGTATGTTCCATGCTGAAATTGGAGAAAATGAGAATGCAATTGGAGCAGGAACCGTGGGATCATCAGAGGCCATAATGTTGGCAGGGCTTGCATTCAAGAAGAAGTGGCAGAACAAGCGCAAGGCAGAGGGCAAGCCTTATGATAAGCCCAATTTGGTGACCGGTTCCAATGTGCAAGTATGTTGGGAGAAATTTGCAAGGTATTTTGAGGTGGAGTTAAGGGAAGTTGAGGTGAGAGAAGGCTACTATGTGATGGACCCTGTCAAAGCTGTTGAACTGGTTGATGAAAACACTATTTGTGTTGCTGCAATCTTAGGGTCAACTTACAATGGAGAGTTCGAAGATGTCAAGCTCTTGAATGACCAGCTGCTTGAAAAAAACAAGCAAACTGGATGGGATACACCTATTCATGTGGATGCTGCTAGTGGTGGCTTTATTGCTCCTTTCCTTTACCCAGAGCTAGAATGGGATTTTAGACTCCCATTGGTGAAGAGCATAAATGTAAGTGGCCACAAGTATGGGCTTGTTTATGCTGGCATTGGTTGGGTTATATGGAGAACCAAGGATGACTTGCCAGAAGACCTTGTCTTCCATATTAACTACCTTGGAGCTGACCAACCCACCTTCACCCTCAACTTCTCTAAAGGTTCTAGTCAGATCATTGCTCAATACTATCAGCTAATTCGCCTTGGCCATGAGGAGCATAATGGAGAACTGCAGAGACAATGCAATGGTGCTGAAGGAAAGTTTGGAGAAGAGTGGGCACTTTAACATACTCTCAAAAGACAATGGTGTTCCTGTGGTGGCATTTTCTCTCAAAGACAGAAGCCGGTACGATGAGTTCAAGATATCGGAGATGTTGCGCCGCCATGGTTGGATCGTGCCGGCATATCCAATGCCACCTGCTGCTCAACACATCAATGTGCTCCGTGTGGTCGTCAGGGCTGAGTTTTCACGCACCCTTGCTGAACGCCTTGTGTTTGACATATACAATGTGCTGCATGAACTTGAAAAACTACACCCCCCAAAAGTGACCAAAAACACAAAGGAAGAGAACAAGGCCATGGTTGAAAATGGGGTGAAGAACACTGCATTGGATGCACACAGGGAAATCATTGCTCAAGAATCCAACAAGCGTCAGAAAATTATGGCTGCCTAGCTCTCTATGCCAATTAAATAAGGAGCCAGAGCCTTCACCATATTTGTTCTAACTCCATTTAAAATCCACCCTTAACTATATTTACTTTATTCTTTTCCGAAAATTTTGGGCATATCATTTAGCTAGCTTACTCCATTATTAGTTTGTTTTCCTATAATCTGATGTCAATTGAGACATGTAATTCAACATTGATGTATTGTTTTTAATTGTTCCACCACATTGATTTTTTAGTGAAAGTTCAGTTGTTACGATTAAGTGCATTTATATATGTGTTACTCTTG
Coding sequences of Glyma.05g136100
>Glyma.05g136100.1 sequence-type=CDS polypeptide=Glyma.05g136100.1.p locus=Glyma.05g136100 ID=Glyma.05g136100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTTTTCCAAAACCCTCTTCTGAGTCTGACCTCTTTCTTTATTCCAACTTTGCTTCTCGCTATGCCAGGGACTCTCTTCCCAGGTTCAGCATGCCAGAAAACTCCATGCCAAAGGAGGCTGCGTACCAGAACATACACGATGAGTTGCAGCTTGATGCAATTCCAAAGCTGAACTTGGCTTCCTTTGTGACCACTTCCATGGAAGAAGAGTGCAACAAGCTCATCATGGAATCCATCAACAAGAACTATGTTGACATGGACGAGTATCCTGCCACCACCGACCTTCACAATCGGTGTGTGAACATGATTGCACGTATGTTCCATGCTGAAATTGGAGAAAATGAGAATGCAATTGGAGCAGGAACCGTGGGATCATCAGAGGCCATAATGTTGGCAGGGCTTGCATTCAAGAAGAAGTGGCAGAACAAGCGCAAGGCAGAGGGCAAGCCTTATGATAAGCCCAATTTGGTGACCGGTTCCAATGTGCAAGTATGTTGGGAGAAATTTGCAAGGTATTTTGAGGTGGAGTTAAGGGAAGTTGAGGTGAGAGAAGGCTACTATGTGATGGACCCTGTCAAAGCTGTTGAACTGGTTGATGAAAACACTATTTGTGTTGCTGCAATCTTAGGGTCAACTTACAATGGAGAGTTCGAAGATGTCAAGCTCTTGAATGACCAGCTGCTTGAAAAAAACAAGCAAACTGGATGGGATACACCTATTCATGTGGATGCTGCTAGTGGTGGCTTTATTGCTCCTTTCCTTTACCCAGAGCTAGAATGGGATTTTAGACTCCCATTGGTGAAGAGCATAAATGTAAGTGGCCACAAGTATGGGCTTGTTTATGCTGGCATTGGTTGGGTTATATGGAGAACCAAGGATGACTTGCCAGAAGACCTTGTCTTCCATATTAACTACCTTGGAGCTGACCAACCCACCTTCACCCTCAACTTCTCTAAAGGTTCTAGTCAGATCATTGCTCAATACTATCAGCTAATTCGCCTTGGCCATGAGGGATACAGGAGCATAATGGAGAACTGCAGAGACAATGCAATGGTGCTGAAGGAAAGTTTGGAGAAGAGTGGGCACTTTAACATACTCTCAAAAGACAATGGTGTTCCTGTGGTGGCATTTTCTCTCAAAGACAGAAGCCGGTACGATGAGTTCAAGATATCGGAGATGTTGCGCCGCCATGGTTGGATCGTGCCGGCATATCCAATGCCACCTGCTGCTCAACACATCAATGTGCTCCGTGTGGTCGTCAGGGCTGAGTTTTCACGCACCCTTGCTGAACGCCTTGTGTTTGACATATACAATGTGCTGCATGAACTTGAAAAACTACACCCCCCAAAAGTGACCAAAAACACAAAGGAAGAGAACAAGGCCATGGTTGAAAATGGGGTGAAGAACACTGCATTGGATGCACACAGGGAAATCATTGCTCAAGAATCCAACAAGCGTCAGAAAATTATGGCTGCCTAG

>Glyma.05g136100.2 sequence-type=CDS polypeptide=Glyma.05g136100.2.p locus=Glyma.05g136100 ID=Glyma.05g136100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTTTTCCAAAACCCTCTTCTGAGTCTGACCTCTTTCTTTATTCCAACTTTGCTTCTCGCTATGCCAGGGACTCTCTTCCCAGGTTCAGCATGCCAGAAAACTCCATGCCAAAGGAGGCTGCGTACCAGAACATACACGATGAGTTGCAGCTTGATGCAATTCCAAAGCTGAACTTGGCTTCCTTTGTGACCACTTCCATGGAAGAAGAGTGCAACAAGCTCATCATGGAATCCATCAACAAGAACTATGTTGACATGGACGAGTATCCTGCCACCACCGACCTTCACAATCGGTGTGTGAACATGATTGCACGTATGTTCCATGCTGAAATTGGAGAAAATGAGAATGCAATTGGAGCAGGAACCGTGGGATCATCAGAGGCCATAATGTTGGCAGGGCTTGCATTCAAGAAGAAGTGGCAGAACAAGCGCAAGGCAGAGGGCAAGCCTTATGATAAGCCCAATTTGGTGACCGGTTCCAATGTGCAAGTATGTTGGGAGAAATTTGCAAGGTATTTTGAGGTGGAGTTAAGGGAAGTTGAGGTGAGAGAAGGCTACTATGTGATGGACCCTGTCAAAGCTGTTGAACTGGTTGATGAAAACACTATTTGTGTTGCTGCAATCTTAGGGTCAACTTACAATGGAGAGTTCGAAGATGTCAAGCTCTTGAATGACCAGCTGCTTGAAAAAAACAAGCAAACTGGATGGGATACACCTATTCATGTGGATGCTGCTAGTGGTGGCTTTATTGCTCCTTTCCTTTACCCAGAGCTAGAATGGGATTTTAGACTCCCATTGGTGAAGAGCATAAATGTAAGTGGCCACAAGTATGGGCTTGTTTATGCTGGCATTGGTTGGGTTATATGGAGAACCAAGGATGACTTGCCAGAAGACCTTGTCTTCCATATTAACTACCTTGGAGCTGACCAACCCACCTTCACCCTCAACTTCTCTAAAGGTTCTAGTCAGATCATTGCTCAATACTATCAGCTAATTCGCCTTGGCCATGAGGAGCATAATGGAGAACTGCAGAGACAATGCAATGGTGCTGAAGGAAAGTTTGGAGAAGAGTGGGCACTTTAA
Predicted protein sequences of Glyma.05g136100
>Glyma.05g136100.1.p sequence-type=predicted peptide transcript=Glyma.05g136100.1 locus=Glyma.05g136100 ID=Glyma.05g136100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVFPKPSSESDLFLYSNFASRYARDSLPRFSMPENSMPKEAAYQNIHDELQLDAIPKLNLASFVTTSMEEECNKLIMESINKNYVDMDEYPATTDLHNRCVNMIARMFHAEIGENENAIGAGTVGSSEAIMLAGLAFKKKWQNKRKAEGKPYDKPNLVTGSNVQVCWEKFARYFEVELREVEVREGYYVMDPVKAVELVDENTICVAAILGSTYNGEFEDVKLLNDQLLEKNKQTGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKDDLPEDLVFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGHEGYRSIMENCRDNAMVLKESLEKSGHFNILSKDNGVPVVAFSLKDRSRYDEFKISEMLRRHGWIVPAYPMPPAAQHINVLRVVVRAEFSRTLAERLVFDIYNVLHELEKLHPPKVTKNTKEENKAMVENGVKNTALDAHREIIAQESNKRQKIMAA*

>Glyma.05g136100.2.p sequence-type=predicted peptide transcript=Glyma.05g136100.2 locus=Glyma.05g136100 ID=Glyma.05g136100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVFPKPSSESDLFLYSNFASRYARDSLPRFSMPENSMPKEAAYQNIHDELQLDAIPKLNLASFVTTSMEEECNKLIMESINKNYVDMDEYPATTDLHNRCVNMIARMFHAEIGENENAIGAGTVGSSEAIMLAGLAFKKKWQNKRKAEGKPYDKPNLVTGSNVQVCWEKFARYFEVELREVEVREGYYVMDPVKAVELVDENTICVAAILGSTYNGEFEDVKLLNDQLLEKNKQTGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKDDLPEDLVFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGHEEHNGELQRQCNGAEGKFGEEWAL*






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