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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G20330.1 | AT | PYRIMIDINE B | JGI | N/A | IEA |
| GO:0006207 | GO-bp | 'de novo' pyrimidine nucleobase biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0006520 | GO-bp | cellular amino acid metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0006520 | GO-bp | cellular amino acid metabolic process | JGI | N/A | IEA |
| GO:0009220 | GO-bp | pyrimidine ribonucleotide biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0004070 | GO-mf | aspartate carbamoyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016597 | GO-mf | amino acid binding | EnsemblGenomes | N/A | IEA |
| GO:0016597 | GO-mf | amino acid binding | JGI | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016743 | GO-mf | carboxyl- or carbamoyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016743 | GO-mf | carboxyl- or carbamoyltransferase activity | JGI | N/A | IEA |
| KOG1504 | KOG | Ornithine carbamoyltransferase OTC/ARG3 | JGI | N/A | IEA |
| PTHR11405 | Panther | CARBAMOYLTRANSFERASE RELATED | JGI | N/A | IEA |
| PF00185 | PFAM | Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain | JGI | N/A | IEA |
| PF02729 | PFAM | Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain | JGI | N/A | IEA |
| PWY-5686 | SoyCyc9 | UMP biosynthesis I | Plant Metabolic Network | ISS | |
| PWY-7211 | SoyCyc9 | superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis | Plant Metabolic Network | ISS | |
| PWY0-162 | SoyCyc9 | superpathway of pyrimidine ribonucleotides de novo biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-57256 | SoyCyc9-rxn | aspartate carbamoyltransferase | Plant Metabolic Network | ISS |
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Glyma.05g131400 not represented in the dataset |
Glyma.05g131400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.08g086000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma05g26170 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.05g131400.1 sequence-type=CDS polypeptide=Glyma.05g131400.1.p locus=Glyma.05g131400 ID=Glyma.05g131400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCAGCTTCTTCTTCTCTTTTCTCCTCTTCAATGCATAGGGAGATGCTTGCTCCAAAGACATCAAAGTGCCCCCAAAATTTTGTATGCTGTCATAGCAAAATTTCCTATATGGAACCTAATTATTTAAAACAAGTATGCTGTCCTAATTCGAGATTTTTAAGTATGAATATGTCATCAAAATGGGAACAAATGGATCGAAGAGATGCATTCCATTGTCGTGCTTTGAAAACTGAACGTGCACCTACCTTTTCAGTGGGGCAGAAATTTCAACTAAATGATATTATTGAAGCTCAACAGTTTGATCGAGATATTCTCAGTGCCATTTTTGAAGTTGCACAGGATATGGAGAATGTTGAAAAGGATTCGCCTGATAACCAGCTTTTAAAGGGTTATCTAATGGCTACCCTATTTTATGAGCCCTCTACTAGAACTAGACTTTCATTTGAGTCTGCCATGAGAAGACTGGGTGGAGAGGTTTTAACTACTGAAAATGCGAGAGAATTTTCATCTGCAGCTAAAGGAGAGACACTTGAAGATACAATCAGAACAATTGAGGGTTACTCTGATATAATTGTGATGCGGCATTTTGAAAGTGGTGCTGCCAGAAGAGCTGCAGCTACATCTGACATTCCAATAATCAATGCAGGGGATGGTCCTGGACAACATCCGACTCAGGCACTTTTAGATGTCTATACAATTCAAAGAGAGATTGGAAAGATTGATGGCATAAAAGTTGGGCTTGTGGGAGACCTTGCTAATGGCAGGACTGTTCGTTCATTGGCATACTTGCTTGCTAAATTCAAGGATGTGAAAATTTATTTTGTCTCTCCTGATGTGGTAAAAATGAAGGATGATATAAAAGACTATTTGACATCAAAGGGAGTGGAGTGGGAAGAATCTTCTGATTTAGTAGAAGTGGCCTCAGAGTGTGATGTTGTTTATCAAACTCGTATTCAAAAGGAAAGATTTGGCGAAAGAATCGACCTTTATGAAAAGGCTAGAGGCAAGTACGTTGTGAATCAGGGTATTCTCAATGTGATGCAGAGACATGCTGTGGTTATGCACCCTCTTCCAAGACTTGATGAAATCACTGTGGATGTTGATGCTGATCCAAGGGCTGCTTACTTTAGGCAGGCCAAATATGGTCTATATATTCGGATGGCTCTATTGAAACTCTTGCTTGTTGGGTGGTAG
>Glyma.05g131400.1.p sequence-type=predicted peptide transcript=Glyma.05g131400.1 locus=Glyma.05g131400 ID=Glyma.05g131400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAASSSLFSSSMHREMLAPKTSKCPQNFVCCHSKISYMEPNYLKQVCCPNSRFLSMNMSSKWEQMDRRDAFHCRALKTERAPTFSVGQKFQLNDIIEAQQFDRDILSAIFEVAQDMENVEKDSPDNQLLKGYLMATLFYEPSTRTRLSFESAMRRLGGEVLTTENAREFSSAAKGETLEDTIRTIEGYSDIIVMRHFESGAARRAAATSDIPIINAGDGPGQHPTQALLDVYTIQREIGKIDGIKVGLVGDLANGRTVRSLAYLLAKFKDVKIYFVSPDVVKMKDDIKDYLTSKGVEWEESSDLVEVASECDVVYQTRIQKERFGERIDLYEKARGKYVVNQGILNVMQRHAVVMHPLPRLDEITVDVDADPRAAYFRQAKYGLYIRMALLKLLLVGW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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