Report for Sequence Feature Glyma.05g130300
Feature Type: gene_model
Chromosome: Gm05
Start: 32322265
stop: 32326970
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.05g130300
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G59180.1 AT
DNA-directed RNA polymerase II
JGI N/A IEA
GO:0000291 GO-bp
nuclear-transcribed mRNA catabolic process, exonucleolytic
EnsemblGenomes N/A IEA
GO:0006351 GO-bp
transcription, DNA-templated
EnsemblGenomes N/A IEA
GO:0006351 GO-bp
transcription, DNA-templated
JGI N/A IEA
GO:0006367 GO-bp
transcription initiation from RNA polymerase II promoter
EnsemblGenomes N/A IEA
GO:0045948 GO-bp
positive regulation of translational initiation
EnsemblGenomes N/A IEA
GO:0060213 GO-bp
positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
EnsemblGenomes N/A IEA
GO:0000932 GO-cc
P-body
EnsemblGenomes N/A IEA
GO:0005634 GO-cc
nucleus
EnsemblGenomes N/A IEA
GO:0005665 GO-cc
DNA-directed RNA polymerase II, core complex
EnsemblGenomes N/A IEA
GO:0003676 GO-mf
nucleic acid binding
EnsemblGenomes N/A IEA
GO:0003697 GO-mf
single-stranded DNA binding
EnsemblGenomes N/A IEA
GO:0003723 GO-mf
RNA binding
JGI N/A IEA
GO:0003727 GO-mf
single-stranded RNA binding
EnsemblGenomes N/A IEA
GO:0003899 GO-mf
DNA-directed 5'-3' RNA polymerase activity
EnsemblGenomes N/A IEA
GO:0003899 GO-mf
DNA-directed RNA polymerase activity
JGI N/A IEA
GO:0031369 GO-mf
translation initiation factor binding
EnsemblGenomes N/A IEA
KOG3298
KOG
DNA-directed RNA polymerase subunit E'
JGI N/A IEA
PTHR12709 Panther
DNA-DIRECTED RNA POLYMERASE II, III
JGI N/A IEA
PF00575 PFAM
S1 RNA binding domain
JGI N/A IEA
PF03876 PFAM
SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397
JGI N/A IEA
Expression Patterns of Glyma.05g130300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.05g130300
Paralog Evidence Comments
Glyma.08g085100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.05g130300 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma05g26040 Wm82.a1.v1.1 IGC As supplied by JGI
Transcripts of Glyma.05g130300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.05g130300.2 sequence-type=transcript locus=Glyma.05g130300 ID=Glyma.05g130300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAAAGCTTCCTGCGCGAGATAGAGACTGAAGATTGAAGAACAGTCGTCGGCTCCTCGCTCGCCCTTCGCTGCTGCGCCATCACCGTGCCCTTCTCAAAGCGATTTTAACCTAACCGCGTTCTTTTTTTCTTCAGAAATCGAGCATAAGGATTTGaggattgaagtattgaacaccaaatcctttatacttGTTGGGCAAGAAGGGAGGGAAAAAGGAGAAACACAAAAATGTTTTTCCACATAGTGCTGGAGCGAAATATGCAGCTGCATCCACGCTACTTTGGTCGCAACCTTCGTGATAATCTCGTTTCCAAGCTAATGAAAGATGTGGAAGGCACTTGCAGCGGCCGACATGGATTTGTGGTGGCAGTTACAGGGATAGAAAACATAGGGAAAGGGCTAATTCGTGATGGAACAGGGTTTGTGACATTTCCGGTTAAGTACCAATGTGTTGTCTTCAGACCATTTAAGGGAGAGATCCTGGAAGCTGTTGTTACTATGGTGAACAAGATGGGATTTTTTGCTGAAGCTGGACCTGTCCAAATCTTTGTTTCAAACCATTTGATTCCGGATGATATGGAGTTCCAGTCTGGAGACATGCCAAATTACACTACATCAGATGGATCAGTTAAGATTCAAAAAGATAGTGAAGTGAGACTAAAGATAATTGGGACTCGAGTGGATGCTACTGAAATTTTCTGCATAGGTACCATAAAAGATGATTTCTTGGGTGTGATCAACGACCCTGCAACAGTTTAAATACCCCTTTCTGTACTCGTGTATCGTATATAGTTTGCATGACTTGGATTTTTACACCGTAATCCTCTTCAGATATTATGTTGTCTTACTCGATCATTGAAAGTACTAAGTCGTTGAGTTTTTGGTTCCAGAATTAATTTTCAACTCCCACAAGTAATTTTGGGTAATTCCATCAAGCAAGATGAGCCAGTACTATTCCAATAAAATTGTTCGTTGCCAGTAAAATATAAAAAGCTGTTGACGTAGTATAAATGAGACTGGATGCAGAATTTTCGATATAGATTGTATATACTTTAATCAAATGATACAGATAAAATGGGAATTACTCGTTTTTGTCTAACAAAATA
>Glyma.05g130300.3 sequence-type=transcript locus=Glyma.05g130300 ID=Glyma.05g130300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCGCGAGATAGAGACTGAAGATTGAAGAACAGTCGTCGGCTCCTCGCTCGCCCTTCGCTGCTGCGCCATCACCGTGCCCTTCTCAAAGCGATTTTAACCTAACCGCGTTCTTTTTTTCTTCAGAAATCGAGCATAAGGATTTGaggattgaagtattgaacaccaaatcctttatacttTGACTGTCCAGGTTGGGCAAGAAGGGAGGGAAAAAGGAGAAACACAAAAATGTTTTTCCACATAGTGCTGGAGCGAAATATGCAGCTGCATCCACGCTACTTTGGTCGCAACCTTCGTGATAATCTCGTTTCCAAGCTAATGAAAGATGTGGAAGGCACTTGCAGCGGCCGACATGGATTTGTGGTGGCAGTTACAGGGATAGAAAACATAGGGAAAGGGCTAATTCGTGATGGAACAGGGTTTGTGACATTTCCGGTTAAGTACCAATGTGTTGTCTTCAGACCATTTAAGGGAGAGATCCTGGAAGCTGTTGTTACTATGGTGAACAAGATGGGATTTTTTGCTGAAGCTGGACCTGTCCAAATCTTTGTTTCAAACCATTTGATTCCGGATGATATGGAGTTCCAGTCTGGAGACATGCCAAATTACACTACATCAGATGGATCAGTTAAGATTCAAAAAGATAGTGAAGTGAGACTAAAGATAATTGGGACTCGAGTGGATGCTACTGAAATTTTCTGCATAGGTACCATAAAAGATGATTTCTTGGGTGTGATCAACGACCCTGCAACAGTTTAAATACCCCTTTCTGTACTCGTGTATCGTATATAGTTTGCATGACTTGGATTTTTACACCGTAATCCTCTTCAGATATTATGTTGTCTTACTCGATCATTGAAAGTACTAAGTCGTTGAGTTTTTGGTTCCAGAATTAATTTTCAACTCCCACAAGTAATTTTGGGTAATTCCATCAAGCAAGATGAGCCAGTACTATTCCAATAAAATTGTTCGTTGCCAGTAAAATATAAAAAGCTGTTGACGTAGTATAAATGAGACTGGATGCAGAATTTTCGATATAGATTGTATATACTTTAATCAAATGATACAGATAAAATGGGAATTACTCGTTTTTGTCTAACAAAATA
>Glyma.05g130300.4 sequence-type=transcript locus=Glyma.05g130300 ID=Glyma.05g130300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCGCGAGATAGAGACTGAAGATTGAAGAACAGTCGTCGGCTCCTCGCTCGCCCTTCGCTGCTGCGCCATCACCGTGCCCTTCTCAAAGCGATTTTAACCTAACCGCGTTCTTTTTTTCTTCAGAAATCGAGCATAAGGATTTGaggattgaagtattgaacaccaaatcctttatacttgtgagtttttgttgcgtcaaattcttcaattgaaaactttgttattaggaattagaatcacactgcgtTCCTCACTGATTGTGTGACCGTAGTGTTCTACATAAATTTTTAGGGCCATATATCACGTTGTCTCTCACTTCGGCTAAATTTCACCATTTCACACACTAACCACACTTTTCTTTTGCATCTCCAACTCCACTCCACCCGTTGCCCTAGCTGAGTTTCGCGTTGGTATACGCAGTGTTATTGATCCTATTCTTGGGGTAACAATGCAAGCTCTATATTGGTCCTGTTGCTGGCATTTAGTGTAACAATCTCTGTAACTCTGTTTGGAACTGTATTGAGGAATATTGAACATAAACTCCATTGGGTTCTCCATTTGTCGGTTCTCGTGTAATTATATGCGACAAtttttctcattttattctctttatcttttcttcttttgtgttttGTGGCCCGGAGTGACTGTCCAGGTTGGGCAAGAAGGGAGGGAAAAAGGAGAAACACAAAAATGTTTTTCCACATAGTGCTGGAGCGAAATATGCAGCTGCATCCACGCTACTTTGGTCGCAACCTTCGTGATAATCTCGTTTCCAAGCTAATGAAAGATGTGGAAGGCACTTGCAGCGGCCGACATGGATTTGTGGTGGCAGTTACAGGGATAGAAAACATAGGGAAAGGGCTAATTCGTGATGGAACAGGGTTTGTGACATTTCCGGTTAAGTACCAATGTGTTGTCTTCAGACCATTTAAGGGAGAGATCCTGGAAGCTGTTGTTACTATGGTGAACAAGATGGGATTTTTTGCTGAAGCTGGACCTGTCCAAATCTTTGTTTCAAACCATTTGATTCCGGATGATATGGAGTTCCAGTCTGGAGACATGCCAAATTACACTACATCAGATGGATCAGTTAAGATTCAAAAAGATAGTGAAGTGAGACTAAAGATAATTGGGACTCGAGTGGATGCTACTGAAATTTTCTGCATAGGTACCATAAAAGATGATTTCTTGGGTGTGATCAACGACCCTGCAACAGTTTAAATACCCCTTTCTGTACTCGTGTATCGTATATAGTTTGCATGACTTGGATTTTTACACCGTAATCCTCTTCAGATATTATGTTGTCTTACTCGATCATTGAAAGTACTAAGTCGTTGAGTTTTTGGTTCCAGAATTAATTTTCAACTCCCACAAGTAATTTTGGGTAATTCCATCAAGCAAGATGAGCCAGTACTATTCCAATAAAATTGTTCGTTGCCAGTAAAATATAAAAAGCTGTTGACGTAGTATAAATGAGACTGGATGCAGAATTTTCGATATAGATTGTATATACTTTAATCAAATGATACAGATAAAATGGGAATTACTCGTTTTTGTCTAACAAAATA
Coding sequences of Glyma.05g130300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.05g130300.1 sequence-type=CDS polypeptide=Glyma.05g130300.1.p locus=Glyma.05g130300 ID=Glyma.05g130300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTTTTCCACATAGTGCTGGAGCGAAATATGCAGCTGCATCCACGCTACTTTGGTCGCAACCTTCGTGATAATCTCGTTTCCAAGCTAATGAAAGATGTGGAAGGCACTTGCAGCGGCCGACATGGATTTGTGGTGGCAGTTACAGGGATAGAAAACATAGGGAAAGGGCTAATTCGTGATGGAACAGGGTTTGTGACATTTCCGGTTAAGTACCAATGTGTTGTCTTCAGACCATTTAAGGGAGAGATCCTGGAAGCTGTTGTTACTATGGTGAACAAGATGGGATTTTTTGCTGAAGCTGGACCTGTCCAAATCTTTGTTTCAAACCATTTGATTCCGGATGATATGGAGTTCCAGTCTGGAGACATGCCAAATTACACTACATCAGATGGATCAGTTAAGATTCAAAAAGATAGTGAAGTGAGACTAAAGATAATTGGGACTCGAGTGGATGCTACTGAAATTGTATGCCTATATATATTATGCCTTTTACTTCATTTTGTTGAATGCTGTTTAGTTAAGCTCCATCAGCGTTATGCTAAATTCTGCTTTAAGAAATTTAAATTAATAATAGGAAAGCAATTAGATATAGCTTTTGTTTCCCTGCAGATTTCTTCACTATTACAAATGCCTCTGAAAAGAGCCTGTTAG
>Glyma.05g130300.2 sequence-type=CDS polypeptide=Glyma.05g130300.2.p locus=Glyma.05g130300 ID=Glyma.05g130300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTTTTCCACATAGTGCTGGAGCGAAATATGCAGCTGCATCCACGCTACTTTGGTCGCAACCTTCGTGATAATCTCGTTTCCAAGCTAATGAAAGATGTGGAAGGCACTTGCAGCGGCCGACATGGATTTGTGGTGGCAGTTACAGGGATAGAAAACATAGGGAAAGGGCTAATTCGTGATGGAACAGGGTTTGTGACATTTCCGGTTAAGTACCAATGTGTTGTCTTCAGACCATTTAAGGGAGAGATCCTGGAAGCTGTTGTTACTATGGTGAACAAGATGGGATTTTTTGCTGAAGCTGGACCTGTCCAAATCTTTGTTTCAAACCATTTGATTCCGGATGATATGGAGTTCCAGTCTGGAGACATGCCAAATTACACTACATCAGATGGATCAGTTAAGATTCAAAAAGATAGTGAAGTGAGACTAAAGATAATTGGGACTCGAGTGGATGCTACTGAAATTTTCTGCATAGGTACCATAAAAGATGATTTCTTGGGTGTGATCAACGACCCTGCAACAGTTTAA
>Glyma.05g130300.3 sequence-type=CDS polypeptide=Glyma.05g130300.3.p locus=Glyma.05g130300 ID=Glyma.05g130300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTTTTCCACATAGTGCTGGAGCGAAATATGCAGCTGCATCCACGCTACTTTGGTCGCAACCTTCGTGATAATCTCGTTTCCAAGCTAATGAAAGATGTGGAAGGCACTTGCAGCGGCCGACATGGATTTGTGGTGGCAGTTACAGGGATAGAAAACATAGGGAAAGGGCTAATTCGTGATGGAACAGGGTTTGTGACATTTCCGGTTAAGTACCAATGTGTTGTCTTCAGACCATTTAAGGGAGAGATCCTGGAAGCTGTTGTTACTATGGTGAACAAGATGGGATTTTTTGCTGAAGCTGGACCTGTCCAAATCTTTGTTTCAAACCATTTGATTCCGGATGATATGGAGTTCCAGTCTGGAGACATGCCAAATTACACTACATCAGATGGATCAGTTAAGATTCAAAAAGATAGTGAAGTGAGACTAAAGATAATTGGGACTCGAGTGGATGCTACTGAAATTTTCTGCATAGGTACCATAAAAGATGATTTCTTGGGTGTGATCAACGACCCTGCAACAGTTTAA
>Glyma.05g130300.4 sequence-type=CDS polypeptide=Glyma.05g130300.4.p locus=Glyma.05g130300 ID=Glyma.05g130300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTTTTCCACATAGTGCTGGAGCGAAATATGCAGCTGCATCCACGCTACTTTGGTCGCAACCTTCGTGATAATCTCGTTTCCAAGCTAATGAAAGATGTGGAAGGCACTTGCAGCGGCCGACATGGATTTGTGGTGGCAGTTACAGGGATAGAAAACATAGGGAAAGGGCTAATTCGTGATGGAACAGGGTTTGTGACATTTCCGGTTAAGTACCAATGTGTTGTCTTCAGACCATTTAAGGGAGAGATCCTGGAAGCTGTTGTTACTATGGTGAACAAGATGGGATTTTTTGCTGAAGCTGGACCTGTCCAAATCTTTGTTTCAAACCATTTGATTCCGGATGATATGGAGTTCCAGTCTGGAGACATGCCAAATTACACTACATCAGATGGATCAGTTAAGATTCAAAAAGATAGTGAAGTGAGACTAAAGATAATTGGGACTCGAGTGGATGCTACTGAAATTTTCTGCATAGGTACCATAAAAGATGATTTCTTGGGTGTGATCAACGACCCTGCAACAGTTTAA
Predicted protein sequences of Glyma.05g130300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.05g130300.1.p sequence-type=predicted peptide transcript=Glyma.05g130300.1 locus=Glyma.05g130300 ID=Glyma.05g130300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIVCLYILCLLLHFVECCLVKLHQRYAKFCFKKFKLIIGKQLDIAFVSLQISSLLQMPLKRAC*
>Glyma.05g130300.2.p sequence-type=predicted peptide transcript=Glyma.05g130300.2 locus=Glyma.05g130300 ID=Glyma.05g130300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATV*
>Glyma.05g130300.3.p sequence-type=predicted peptide transcript=Glyma.05g130300.3 locus=Glyma.05g130300 ID=Glyma.05g130300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATV*
>Glyma.05g130300.4.p sequence-type=predicted peptide transcript=Glyma.05g130300.4 locus=Glyma.05g130300 ID=Glyma.05g130300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATV*