Glyma.05g130200

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Report for Sequence Feature Glyma.05g130200

Feature Type:	gene_model
Chromosome:	Gm05
Start:	32313163
stop:	32315844
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.05g130200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G18260.1	AT	Cytochrome b561/ferric reductase transmembrane protein family	JGI	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	EnsemblGenomes	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	JGI	N/A	IEA
PTHR23130	Panther	FAMILY NOT NAMED	JGI	N/A	IEA
PTHR23130:SF18	Panther		JGI	N/A	IEA
PF03188	PFAM	Eukaryotic cytochrome b561	JGI	N/A	IEA

Expression Patterns of Glyma.05g130200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g130200 not represented in the dataset	Glyma.05g130200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.05g130200

Paralog	Evidence	Comments
Glyma.08g085000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g130200 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma05g26030	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.05g130200

Limit To All Plant Sequences

>Glyma.05g130200.2 sequence-type=transcript locus=Glyma.05g130200 ID=Glyma.05g130200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTCATCCCTTTGTAAATCTTCTTTATACAAAAAGTAGATTAAGTCCTTCACCACACTTTAAAAGCCCCCTTAGCCATCCCAAAAAATAATCATATCCTAAAGCATCATTGGCTTCAAAACTCATagagagagagaggagagagagCTTAAGGGTAGTCGTTTGTATGTTTTTATTTTCCCTCTTGTTAGGTTGGGAGAATGCCTATCCTTTGCAAACCAGTGTACATTGTTGTGACTTCATTTTATGTTTATGTTCTTCAATTCAGTGACTGTTTGGCCTATGAGGAGGAACATCACTCTAGTAGTCACAAAAGCACTAATAACAAAGTTTACAAGGTAAATCAGCAGAAGACATCTGATATTGCAGTACATGGATTGCTCCTTTGGGCTTCAACAGGGTTTTTGATGCCTCTTGGAATACTTATCATCAAAGGGTCCATTAAAGCAGAACCTGGATCTAGAAGGAGTAAAGTCCTCTTCTATCTCCATATGCTTTCAGTGCTTCTTGCCACAGTTGGAGCTGCAATGTCCCTGAAGAAGTTTGAGAATTCATTTGATAACAGCCATCAAAAACTAGGCCTAGCACTTTATGGTGCTATATTGGTGCAAGGCTTGATTGGATTTTTCAGACCACACAGAGGAAAGAAGGAGAGGAGTTATTGGTACTTACTACATTGGATACTAGGGACTATAGTTTCTCTTGTGGGGATCATCAATATTTACACTGGATTAAAAGCCTACCATAAGAGAACCTTAAAAAGCACAGCCCTTTGGACTATCCTTTTCACTGTGGAAGTCTCTTTCATTGGATTAGTTTACCTCTTCCAAGACAAATTGGAATATATGAAAAAGCAAGGAGTGATTATAGGAAGTGAGTCGTCAATTGTGTCGTCTAACCAAGATATTCCTCAAAGCCAAACTCAAAAGGAGTTGTTGCCAGTTGCATGTGGAAGAAAGAGAAATGCACTTGAGAATTTGTTTGACTAATCTCTCTCTTTAGATTACATTTTTTAGAGCTTGTTTTCACTTTAGTTTTTGGTGCCTGCACTTTATGCAAGTAGGAGTTGGATTTTATGAAAGGTTGGTTGATTGAGTGCATTCATCAAAAGGTGAAGTTTGATTGGTGTATGTTATCTCTTTTCTTTTCTTTTTTTTATGCATATTCTTTCACATGTATTACGAATATTATAAGTGTGCGTGTGGATACTGACCACAGAATGTATAGACAATTGTGGGAGCAGTTTGTGAATTTATAATTTTCATTGAAAATATAGTATGATTTTTGGAATATATTATAATGTATGTATATGTCTTTAG

Coding sequences of Glyma.05g130200

Limit To All Plant Sequences

>Glyma.05g130200.1 sequence-type=CDS polypeptide=Glyma.05g130200.1.p locus=Glyma.05g130200 ID=Glyma.05g130200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCTATCCTTTGCAAACCAGTGTACATTGTTGTGACTTCATTTTATGTTTATGTTCTTCAATTCAGTGACTGTTTGGCCTATGAGGAGGAACATCACTCTAGTAGTCACAAAAGCACTAATAACAAAGTTTACAAGGTAAATCAGCAGAAGACATCTGATATTGCAGTACATGGATTGCTCCTTTGGGCTTCAACAGGGTTTTTGATGCCTCTTGGAATACTTATCATCAAAGGGTCCATTAAAGCAGAACCTGGATCTAGAAGGAGTAAAGTCCTCTTCTATCTCCATGTTGGTTTTCAGATGCTTTCAGTGCTTCTTGCCACAGTTGGAGCTGCAATGTCCCTGAAGAAGTTTGAGAATTCATTTGATAACAGCCATCAAAAACTAGGCCTAGCACTTTATGGTGCTATATTGGTGCAAGGCTTGATTGGATTTTTCAGACCACACAGAGGAAAGAAGGAGAGGAGTTATTGGTACTTACTACATTGGATACTAGGGACTATAGTTTCTCTTGTGGGGATCATCAATATTTACACTGGATTAAAAGCCTACCATAAGAGAACCTTAAAAAGCACAGCCCTTTGGACTATCCTTTTCACTGTGGAAGTCTCTTTCATTGGATTAGTTTACCTCTTCCAAGACAAATTGGAATATATGAAAAAGCAAGGAGTGATTATAGGAAGTGAGTCGTCAATTGTGTCGTCTAACCAAGATATTCCTCAAAGCCAAACTCAAAAGGAGTTGTTGCCAGTTGCATGTGGAAGAAAGAGAAATGCACTTGAGAATTTGTTTGACTAA

>Glyma.05g130200.2 sequence-type=CDS polypeptide=Glyma.05g130200.2.p locus=Glyma.05g130200 ID=Glyma.05g130200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCTATCCTTTGCAAACCAGTGTACATTGTTGTGACTTCATTTTATGTTTATGTTCTTCAATTCAGTGACTGTTTGGCCTATGAGGAGGAACATCACTCTAGTAGTCACAAAAGCACTAATAACAAAGTTTACAAGGTAAATCAGCAGAAGACATCTGATATTGCAGTACATGGATTGCTCCTTTGGGCTTCAACAGGGTTTTTGATGCCTCTTGGAATACTTATCATCAAAGGGTCCATTAAAGCAGAACCTGGATCTAGAAGGAGTAAAGTCCTCTTCTATCTCCATATGCTTTCAGTGCTTCTTGCCACAGTTGGAGCTGCAATGTCCCTGAAGAAGTTTGAGAATTCATTTGATAACAGCCATCAAAAACTAGGCCTAGCACTTTATGGTGCTATATTGGTGCAAGGCTTGATTGGATTTTTCAGACCACACAGAGGAAAGAAGGAGAGGAGTTATTGGTACTTACTACATTGGATACTAGGGACTATAGTTTCTCTTGTGGGGATCATCAATATTTACACTGGATTAAAAGCCTACCATAAGAGAACCTTAAAAAGCACAGCCCTTTGGACTATCCTTTTCACTGTGGAAGTCTCTTTCATTGGATTAGTTTACCTCTTCCAAGACAAATTGGAATATATGAAAAAGCAAGGAGTGATTATAGGAAGTGAGTCGTCAATTGTGTCGTCTAACCAAGATATTCCTCAAAGCCAAACTCAAAAGGAGTTGTTGCCAGTTGCATGTGGAAGAAAGAGAAATGCACTTGAGAATTTGTTTGACTAA

Predicted protein sequences of Glyma.05g130200

Limit To All Plant Sequences

>Glyma.05g130200.1.p sequence-type=predicted peptide transcript=Glyma.05g130200.1 locus=Glyma.05g130200 ID=Glyma.05g130200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPILCKPVYIVVTSFYVYVLQFSDCLAYEEEHHSSSHKSTNNKVYKVNQQKTSDIAVHGLLLWASTGFLMPLGILIIKGSIKAEPGSRRSKVLFYLHVGFQMLSVLLATVGAAMSLKKFENSFDNSHQKLGLALYGAILVQGLIGFFRPHRGKKERSYWYLLHWILGTIVSLVGIINIYTGLKAYHKRTLKSTALWTILFTVEVSFIGLVYLFQDKLEYMKKQGVIIGSESSIVSSNQDIPQSQTQKELLPVACGRKRNALENLFD*

>Glyma.05g130200.2.p sequence-type=predicted peptide transcript=Glyma.05g130200.2 locus=Glyma.05g130200 ID=Glyma.05g130200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPILCKPVYIVVTSFYVYVLQFSDCLAYEEEHHSSSHKSTNNKVYKVNQQKTSDIAVHGLLLWASTGFLMPLGILIIKGSIKAEPGSRRSKVLFYLHMLSVLLATVGAAMSLKKFENSFDNSHQKLGLALYGAILVQGLIGFFRPHRGKKERSYWYLLHWILGTIVSLVGIINIYTGLKAYHKRTLKSTALWTILFTVEVSFIGLVYLFQDKLEYMKKQGVIIGSESSIVSSNQDIPQSQTQKELLPVACGRKRNALENLFD*

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