SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.05g127900

Feature Type:gene_model
Chromosome:Gm05
Start:32180050
stop:32182210
Source:JGI
Version:Wm82.a4.v1
High confidence:yes



Annotations for Glyma.05g127900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G48870.1AT SAD1 JGI N/AIEA
K12624KEGG Spliceosome JGI N/AIEA
KOG1775 KOG U6 snRNA-associated Sm-like protein JGI N/AIEA
PTHR20971PantherFam U6 SNRNA-ASSOCIATED PROTEIN JGI N/AIEA
PTHR20971:SF0PantherFam U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5 JGI N/AIEA
PF01423Pfam LSM domain JGI N/AIEA

Gene model name correspondences to Glyma.05g127900 Gene Call Version Wm82.a4.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g25800 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05g127900
>Glyma.05g127900.1 sequence-type=CDS polypeptide=Glyma.05g127900.1.p locus=Glyma.05g127900 id=Glyma.05g127900.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGGCCAACAATCCATCACAGCTTCTCCCATCAGAGTTGATTGACCGGTGTATAGGTTCAAAAATTTGGGTGATAATGAAGGGTGACAAGGAGCTTGTTGGTACTCTTAGAGGCTTTGATGTTTATGCCAACATGGTCCTTGAAGATGTCACTGAATATGAAATCACTGCTGAAGGGAGACGGATAACCAAGCTTGATCAGATTTTACTCAATGGAAACAACATTGCCATTTTGGTACCCGGTGGTTCTCCTGAGTCAGAATGA
Predicted protein sequences of Glyma.05g127900
>Glyma.05g127900.1.p sequence-type=predicted peptide transcript=Glyma.05g127900.1 locus=Glyma.05g127900 id=Glyma.05g127900.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYANMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPESE*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo