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Report for Sequence Feature Glyma.05g127900

Feature Type:gene_model
Chromosome:Gm05
Start:32139620
stop:32141770
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g127900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G48870.1AT Small nuclear ribonucleoprotein family protein JGI N/AIEA
GO:0000398GO-bp mRNA splicing, via spliceosome EnsemblGenomesN/AIEA
GO:0000956GO-bp nuclear-transcribed mRNA catabolic process EnsemblGenomesN/AIEA
GO:0005688GO-cc U6 snRNP EnsemblGenomesN/AIEA
GO:0046540GO-cc U4/U6 x U5 tri-snRNP complex EnsemblGenomesN/AIEA
GO:1990726GO-cc Lsm1-7-Pat1 complex EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
KOG1775 KOG U6 snRNA-associated Sm-like protein JGI N/AIEA
PTHR20971Panther U6 SNRNA-ASSOCIATED PROTEIN JGI N/AIEA
PF01423PFAM LSM domain JGI N/AIEA

Expression Patterns of Glyma.05g127900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g127900
ParalogEvidenceComments
Glyma.08g082700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g127900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g25800 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.05g127900
>Glyma.05g127900.2 sequence-type=transcript locus=Glyma.05g127900 ID=Glyma.05g127900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAAAATTGTGGGGAACTCAAATTGATTGAAATCAAACCTCAGCACCACTAGGTCAAGCTTCTGTCTCAGTCACTGTTTCTCCGGCCTCGCTTCTTCTCTCAGATTCAGATACCAATTCGGTTTCTTCTGAACCAAACTTGGTTTGAGAAATTCGGCCGTTAATTTTCCATGGCCAACAATCCATCACAGCTTCTCCCATCAGAGTTGATTGACCGGTGTATAGGTTCAAAAATTTGGGTGATAATGAAGGGTGACAAGGAGCTTGTTGGTACTCTTAGAGGCTTTGATGTTTATGCCAACATGGTCCTTGAAGATGTCACTGAATACTTTCCCAGGGGGCTCCTTCTTTTTCTTTTTGGTTTAAGAAGACTGAAATATCTGGTGTAAATTCGTTGGAGGAACTTTGCAGCATTTCTGATTATCAACTTGATTATTTGAATTTGTACTTACAGAGGACTCTTAGTTATCTTGGCATGATTTGTACTAGCTTTTGCTTATGTGATAAGTATGTCCATATATGTATGAACATACATGGGTTTGTTATATTCATACAACAGTGAAATCACTGCTGAAGGGAGACGGATAACCAAGCTTGATCAGATTTTACTCAATGGAAACAACATTGCCATTTTGGTACCCGGTGGTTCTCCTGAGTCAGAATGAATAGGGCTACTTGGTACCAATATTAACTCTCCAATGTTGCTCTAGGCACGTAATTCCTATATTTTAACGAGGATTCTGAGGCCATTAGGTTTTTACTTCCTTAAGTTGGTTTTTATGATACACATGGTTGTGGTGTAATGCCTATTCAACTTTTATCATCATGTTGAACTGTGGATCGGCCAGGGTAACAAGTAATGCTACTGAGTGACAATTAGTTGTGCGCCTTTATATTCCTGTTCCTACTTCCGTTACTATCTGTTTTCACTTTCTGCATGAACTTATCGAGTCAAGTCTTAATTGAAAATTTTATCACCTTAACTCTTTT
Coding sequences of Glyma.05g127900
>Glyma.05g127900.1 sequence-type=CDS polypeptide=Glyma.05g127900.1.p locus=Glyma.05g127900 ID=Glyma.05g127900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCAACAATCCATCACAGCTTCTCCCATCAGAGTTGATTGACCGGTGTATAGGTTCAAAAATTTGGGTGATAATGAAGGGTGACAAGGAGCTTGTTGGTACTCTTAGAGGCTTTGATGTTTATGCCAACATGGTCCTTGAAGATGTCACTGAATATGAAATCACTGCTGAAGGGAGACGGATAACCAAGCTTGATCAGATTTTACTCAATGGAAACAACATTGCCATTTTGGTACCCGGTGGTTCTCCTGAGTCAGAATGA

>Glyma.05g127900.2 sequence-type=CDS polypeptide=Glyma.05g127900.2.p locus=Glyma.05g127900 ID=Glyma.05g127900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCAACAATCCATCACAGCTTCTCCCATCAGAGTTGATTGACCGGTGTATAGGTTCAAAAATTTGGGTGATAATGAAGGGTGACAAGGAGCTTGTTGGTACTCTTAGAGGCTTTGATGTTTATGCCAACATGGTCCTTGAAGATGTCACTGAATACTTTCCCAGGGGGCTCCTTCTTTTTCTTTTTGGTTTAAGAAGACTGAAATATCTGGTGTAA
Predicted protein sequences of Glyma.05g127900
>Glyma.05g127900.1.p sequence-type=predicted peptide transcript=Glyma.05g127900.1 locus=Glyma.05g127900 ID=Glyma.05g127900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYANMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPESE*

>Glyma.05g127900.2.p sequence-type=predicted peptide transcript=Glyma.05g127900.2 locus=Glyma.05g127900 ID=Glyma.05g127900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYANMVLEDVTEYFPRGLLLFLFGLRRLKYLV*






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