Glyma.05g127300

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Report for Sequence Feature Glyma.05g127300

Feature Type:	gene_model
Chromosome:	Gm05
Start:	32021521
stop:	32025767
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.05g127300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G64520.1	AT	regulatory particle non-ATPase 12A	JGI	N/A	IEA
GO:0006508	GO-bp	proteolysis	EnsemblGenomes	N/A	IEA
GO:0043161	GO-bp	proteasome-mediated ubiquitin-dependent protein catabolic process	EnsemblGenomes	N/A	IEA
GO:0043248	GO-bp	proteasome assembly	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0005829	GO-cc	cytosol	EnsemblGenomes	N/A	IEA
GO:0005838	GO-cc	proteasome regulatory particle	EnsemblGenomes	N/A	IEA
GO:0008541	GO-cc	proteasome regulatory particle, lid subcomplex	EnsemblGenomes	N/A	IEA
KOG3151	KOG	26S proteasome regulatory complex, subunit RPN12/PSMD8	JGI	N/A	IEA
PTHR12387	Panther	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 8	JGI	N/A	IEA
PF03399	PFAM	SAC3/GANP/Nin1/mts3/eIF-3 p25 family	JGI	N/A	IEA

Expression Patterns of Glyma.05g127300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g127300 not represented in the dataset	Glyma.05g127300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.05g127300

Paralog	Evidence	Comments
Glyma.08g082000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g127300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma05g25730	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.05g127300

Limit To All Plant Sequences

>Glyma.05g127300.2 sequence-type=transcript locus=Glyma.05g127300 ID=Glyma.05g127300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCATAATTGTTTAGGAACGTGAAAGCATAGCACCGTTCATTTCATCATCGCTGTGGTTTTTCTTTTTCTCTGTTGAGGTTGTCATTGGGAGCACTCAACCTAAACTATTCAAGTTGTGAAAGCACATCACAAGAAAATTCGCAAGCGATGGATCCGAAGCTAAAAGAGGTTTCTCAGCTCTTCGATCGCTTTAAGGCTTCGTTTATCAGGAACGACTTTGATACCTGTTCCAATCTCCTTTCTCAGCTAAAGGTGTTACTTACAGGTTTCAGAAGCCTTCCACCGTTGTTTGCAGATACACCTAATGCAGTTCATGAATTAACAATAGCAAGGGATATATACGAGCATGCTGTTGTCCTTAGTGTGAAAAATGAGGATCAAGATGCTTTTGAAAGGGATTTCTTCCAGTTGAAGCCTTATTATACAGATGCCTGCAATCGACTTCCACCATCTCCTCAGGAGTACCCAATTCTGGGTCTCAACCTGTTGAGATTACTTGTGCAGAATAGGATTGCTGAATTCCATACTGAGTTGGAATTGCTTTCATCTGCTGCTCTTGAGAATCCTTGCATTAAGCATGCTGTGGAGTTGGAACAATCTTTTATGGAAGGGGCTTACAATCGTGTCTTGAGTGCACGACAGACAGTGCCACATGATACATACGTTTATTTTATGGATCTTTTGGCAAAGACTGTCAGAGATGAAATAGCTGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAAGGATGCTAAGCAAATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATTAAAGAGGAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCCAAAAGGCAAAAGAATCTGCACCTTGCAAAGAAATACCCTCTCTGCAGCTCATCAACCAGACGCTTAGTTATGCTAGGGAGTTGGAGAGGATTGTCTGAGAAGAAATGCAATGGCGGCTTCTGTTCCCAAAATTTCTAGGTGTCTGGATAATAGTTGCTAATACTGTCTTTTGAAATTGTTCATTTCTGATTCAATGTGAAACTATAAAATTGTTCACCTCTGTATTTTGATCATTTAGGTGGCAGTATGGTTACTTTTTTTTTTTAACTTGTGCTCTGGGTTTTCCACTTTTTTATGTTGAGGATTATATGATTCATGAAGCTGTAGTCTAAATTTCAAACCCATAGAAAGGTTGGTTGATATCAGTGTTGCCAAATAGCGGCTATCATGCTATAGCATAGTGGTTTTTAGGGAAATTGCGATAGCGTCGTGTTGTGGACTCTGTGAAAATTGCAATCGCGGGCGCCTTTGTGTCGTGAAATCTCATTGTGTCGC

Coding sequences of Glyma.05g127300

Limit To All Plant Sequences

>Glyma.05g127300.1 sequence-type=CDS polypeptide=Glyma.05g127300.1.p locus=Glyma.05g127300 ID=Glyma.05g127300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCCGAAGCTAAAAGAGGTTTCTCAGCTCTTCGATCGCTTTAAGGCTTCGTTTATCAGGAACGACTTTGATACCTGTTCCAATCTCCTTTCTCAGCTAAAGGTGTTACTTACAGGTTTCAGAAGCCTTCCACCGTTGTTTGCAGATACACCTAATGCAGTTCATGAATTAACAATAGCAAGTAACATTCTTCCTCCAATCAGGGATATATACGAGCATGCTGTTGTCCTTAGTGTGAAAAATGAGGATCAAGATGCTTTTGAAAGGGATTTCTTCCAGTTGAAGCCTTATTATACAGATGCCTGCAATCGACTTCCACCATCTCCTCAGGAGTACCCAATTCTGGGTCTCAACCTGTTGAGATTACTTGTGCAGAATAGGATTGCTGAATTCCATACTGAGTTGGAATTGCTTTCATCTGCTGCTCTTGAGAATCCTTGCATTAAGCATGCTGTGGAGTTGGAACAATCTTTTATGGAAGGGGCTTACAATCGTGTCTTGAGTGCACGACAGACAGTGCCACATGATACATACGTTTATTTTATGGATCTTTTGGCAAAGACTGTCAGAGATGAAATAGCTGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAAGGATGCTAAGCAAATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATTAAAGAGGAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCCAAAAGGCAAAAGAATCTGCACCTTGCAAAGAAATACCCTCTCTGCAGCTCATCAACCAGACGCTTAGTTATGCTAGGGAGTTGGAGAGGATTGTCTGA

>Glyma.05g127300.2 sequence-type=CDS polypeptide=Glyma.05g127300.2.p locus=Glyma.05g127300 ID=Glyma.05g127300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCCGAAGCTAAAAGAGGTTTCTCAGCTCTTCGATCGCTTTAAGGCTTCGTTTATCAGGAACGACTTTGATACCTGTTCCAATCTCCTTTCTCAGCTAAAGGTGTTACTTACAGGTTTCAGAAGCCTTCCACCGTTGTTTGCAGATACACCTAATGCAGTTCATGAATTAACAATAGCAAGGGATATATACGAGCATGCTGTTGTCCTTAGTGTGAAAAATGAGGATCAAGATGCTTTTGAAAGGGATTTCTTCCAGTTGAAGCCTTATTATACAGATGCCTGCAATCGACTTCCACCATCTCCTCAGGAGTACCCAATTCTGGGTCTCAACCTGTTGAGATTACTTGTGCAGAATAGGATTGCTGAATTCCATACTGAGTTGGAATTGCTTTCATCTGCTGCTCTTGAGAATCCTTGCATTAAGCATGCTGTGGAGTTGGAACAATCTTTTATGGAAGGGGCTTACAATCGTGTCTTGAGTGCACGACAGACAGTGCCACATGATACATACGTTTATTTTATGGATCTTTTGGCAAAGACTGTCAGAGATGAAATAGCTGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAAGGATGCTAAGCAAATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATTAAAGAGGAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCCAAAAGGCAAAAGAATCTGCACCTTGCAAAGAAATACCCTCTCTGCAGCTCATCAACCAGACGCTTAGTTATGCTAGGGAGTTGGAGAGGATTGTCTGA

Predicted protein sequences of Glyma.05g127300

Limit To All Plant Sequences

>Glyma.05g127300.1.p sequence-type=predicted peptide transcript=Glyma.05g127300.1 locus=Glyma.05g127300 ID=Glyma.05g127300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDPKLKEVSQLFDRFKASFIRNDFDTCSNLLSQLKVLLTGFRSLPPLFADTPNAVHELTIASNILPPIRDIYEHAVVLSVKNEDQDAFERDFFQLKPYYTDACNRLPPSPQEYPILGLNLLRLLVQNRIAEFHTELELLSSAALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHDTYVYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAKQMLLFSSDQELLEYIKEEHPEWEIKNGSVFFQKAKESAPCKEIPSLQLINQTLSYARELERIV*

>Glyma.05g127300.2.p sequence-type=predicted peptide transcript=Glyma.05g127300.2 locus=Glyma.05g127300 ID=Glyma.05g127300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDPKLKEVSQLFDRFKASFIRNDFDTCSNLLSQLKVLLTGFRSLPPLFADTPNAVHELTIARDIYEHAVVLSVKNEDQDAFERDFFQLKPYYTDACNRLPPSPQEYPILGLNLLRLLVQNRIAEFHTELELLSSAALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHDTYVYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAKQMLLFSSDQELLEYIKEEHPEWEIKNGSVFFQKAKESAPCKEIPSLQLINQTLSYARELERIV*

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