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Report for Sequence Feature Glyma.05g127200

Feature Type:gene_model
Chromosome:Gm05
Start:32014213
stop:32017922
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g127200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G29790.1AT S-adenosyl-L-methionine-dependent methyltransferases superfamily protein JGI N/AIEA
GO:0032259GO-bp methylation EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0008168GO-mf methyltransferase activity EnsemblGenomesN/AIEA
GO:0008168GO-mf methyltransferase activity JGI N/AIEA
GO:0008757GO-mf S-adenosylmethionine-dependent methyltransferase activity EnsemblGenomesN/AIEA
PTHR10108Panther METHYLTRANSFERASE JGI N/AIEA
PTHR10108:SF434Panther JGI N/AIEA
PF03141PFAM Putative S-adenosyl-L-methionine-dependent methyltransferase JGI N/AIEA

Expression Patterns of Glyma.05g127200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g127200
ParalogEvidenceComments
Glyma.08g081900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g127200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g25720 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05g127200
>Glyma.05g127200.1 sequence-type=CDS polypeptide=Glyma.05g127200.1.p locus=Glyma.05g127200 ID=Glyma.05g127200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTTTCACCTTCAGCACCATGACCCTCAACCTGGTCCTCCTAATGGCCATGGTTGCCACCAACATCCTCTCCCTCTACCACCTCTCCTCCACCCTCCAATCCCCCAAATCCCCCAAACCACCCCCACCAGTCCCCGACCAACTCCTCCACCAGCTCCACACCATACGCGCCACCATCAGTCACCTCACTCGCCTCCAGAACACCCACAACCCAGCACAAAAATCCACCATCCCCTCAGATCTACTCTTATACTCCCACCTCTCCCCAATAGCCTCTTCTTGCCACAACCACCCCGAACTCCTCCACAAGTACATGACTTACATTCCCTTCTCTCTCTGCCCCTCCGATTCTGACCTCGCCGAATCCCTAATCCTACGCGGTTGTCACCCCCTCCCCCGCCGCCGCTGCTTCTCCAAAACCCCGCAAAAACCCCCCGTTTCCCTTCCTGAAAACCCCTTCCCCTCCTCCCTCCCTGACAACGCCGTAATTTGGGACCATTACTCTTGCAAATCCTTCGATTGCTTGAACAAACAAAACCCCAACCTCGGTTTTGAACCTTCTCGGGATATTTCGAGGTTCAATTCGTATAAGACCGATTTGGATCTCCCGATCCAGCAGTTGTTACAGATCGCGGCGGCCGCGAAGTCGGCGCTGCGCCTCGGCCTCGACGTCGGCGGCGGCACCGGCTCCTTTGCCGCCTCGATGAGGCTCCGCAACGTGACCGTGGTGACCACGACCATGAACGTGGCGGTGCCGAACAGCGAGGCCGTCGCACTGCGGGGGCTCGTGCCGCTGCACGTGCCCCTGCAGCAGCGGCTGCCGCTGTTCGACGGCGTCGTGGATCTGGTGCGGTGCGGGCGCGCCGTGAACCGGTGGATTCCTTTGACGGTGATGGAGTTTCTGCTGCTGGATGTGGACAGGGTGCTGAGGGGCGGAGGGTACCTTTGGGTGGACCATTTTTTCAGCAAAGTGGTGGACCTTGAGAAGGTGTATGCGCCGTTGATTGGGAAATTAGGGTACAAGAAGGTGAAGTGGGCGACGGGGAATAAGACCGATGCCAGTGGCGTCAAGAATGGAGAAGTTTACTTGACTGCGTTGCTGCAGAAGCCTGTGTCCAGATGA
Predicted protein sequences of Glyma.05g127200
>Glyma.05g127200.1.p sequence-type=predicted peptide transcript=Glyma.05g127200.1 locus=Glyma.05g127200 ID=Glyma.05g127200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGFTFSTMTLNLVLLMAMVATNILSLYHLSSTLQSPKSPKPPPPVPDQLLHQLHTIRATISHLTRLQNTHNPAQKSTIPSDLLLYSHLSPIASSCHNHPELLHKYMTYIPFSLCPSDSDLAESLILRGCHPLPRRRCFSKTPQKPPVSLPENPFPSSLPDNAVIWDHYSCKSFDCLNKQNPNLGFEPSRDISRFNSYKTDLDLPIQQLLQIAAAAKSALRLGLDVGGGTGSFAASMRLRNVTVVTTTMNVAVPNSEAVALRGLVPLHVPLQQRLPLFDGVVDLVRCGRAVNRWIPLTVMEFLLLDVDRVLRGGGYLWVDHFFSKVVDLEKVYAPLIGKLGYKKVKWATGNKTDASGVKNGEVYLTALLQKPVSR*






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