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Report for Sequence Feature Glyma.05g121600

Feature Type:gene_model
Chromosome:Gm05
Start:31433121
stop:31434056
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g121600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G43660.1AT Vacuolar iron transporter (VIT) family protein JGI N/AIEA
GO:0006880GO-bp intracellular sequestering of iron ion EnsemblGenomesN/AIEA
GO:0009399GO-bp nitrogen fixation EnsemblGenomesN/AIEA
GO:0009877GO-bp nodulation EnsemblGenomesN/AIEA
GO:0030026GO-bp cellular manganese ion homeostasis EnsemblGenomesN/AIEA
GO:0034755GO-bp iron ion transmembrane transport EnsemblGenomesN/AIEA
GO:0071281GO-bp cellular response to iron ion EnsemblGenomesN/AIEA
GO:0071421GO-bp manganese ion transmembrane transport EnsemblGenomesN/AIEA
GO:0005623GO-cc cell EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0005381GO-mf iron ion transmembrane transporter activity EnsemblGenomesN/AIEA
GO:0005384GO-mf manganese ion transmembrane transporter activity EnsemblGenomesN/AIEA
KOG4473 KOG Uncharacterized membrane protein JGI N/AIEA
PF01988PFAM VIT family JGI N/AIEA

Proteins Associated with Glyma.05g121600
LocusGene SymbolProtein Name
N-21 nodulin-21
VTL1a vacuole iron transporter like

Expression Patterns of Glyma.05g121600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g121600
ParalogEvidenceComments
Glyma.08g076300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g121600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g25010 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05g121600
>Glyma.05g121600.1 sequence-type=CDS polypeptide=Glyma.05g121600.1.p locus=Glyma.05g121600 ID=Glyma.05g121600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTGTTGTGTCACCGAAAATGGCTAATGCTACACCTAATGGTTCGGTGCCACATAACCATGTAGGAGCAGTACTTCTAACAATTCCCACAATCAAAATTGATGGGAAGCAAACCCTAGCCACCGAAGATCACACCAGCATTGACTATTTACAGAGGGCACAGTGGCTTCGTGCAGCGATTTTAGGAGCCAATGATGGGTTGGTTTCGGTTGCATCGTTGATGATGGGTGTAGGAGCTGTTAAAAGAGATGCAAAAGCTATGCTACTTGCTGGTTTTGCAGGGTTAGTTGCTGGGGCTTGTGGCATGGCAATAGGAGAGTTTGTTGCTGTGTACACTCAGTATGAGGTAGAGGTAGGTCAAATGAAGAGAGATATGAATATGAGTGTGGGAGGGGAGAGAGACTTGGAGATGGAGATGGAGAGAAGAACATTGCCTAATCCATTGCAAGCTACTTTGGCATCAGCACTCTGCTTTTCTATAGGTGCATTGGTGCCTCTACTTTCTGCTGCTTTCATTGAAAACTACAGGACTAGGATTATTGTGGTTGTGGCAATGTCTTGTTTGGCTTTGGTGGTGTTTGGATGGGTGGGCGCTAAGCTGGGAAAAACTCCCAAGTTAAAATCTTGTGTAAGGTTCCTTCTTGGAGGATGCATAGCCATGTCCATCACTTTTGGCTCAACTAAATTACTTGGTGCTAGCGCATTATAA
Predicted protein sequences of Glyma.05g121600
>Glyma.05g121600.1.p sequence-type=predicted peptide transcript=Glyma.05g121600.1 locus=Glyma.05g121600 ID=Glyma.05g121600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVVVSPKMANATPNGSVPHNHVGAVLLTIPTIKIDGKQTLATEDHTSIDYLQRAQWLRAAILGANDGLVSVASLMMGVGAVKRDAKAMLLAGFAGLVAGACGMAIGEFVAVYTQYEVEVGQMKRDMNMSVGGERDLEMEMERRTLPNPLQATLASALCFSIGALVPLLSAAFIENYRTRIIVVVAMSCLALVVFGWVGAKLGKTPKLKSCVRFLLGGCIAMSITFGSTKLLGASAL*






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