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Report for Sequence Feature Glyma.05g120500

Feature Type:gene_model
Chromosome:Gm05
Start:31355106
stop:31357014
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g120500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G64530.1AT xylem NAC domain 1 JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
PF02365PFAM No apical meristem (NAM) protein JGI N/AIEA

Expression Patterns of Glyma.05g120500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g120500 not represented in the dataset
Glyma.05g120500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g120500
ParalogEvidenceComments
Glyma.08g075300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g120500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g24910 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05g120500
>Glyma.05g120500.1 sequence-type=CDS polypeptide=Glyma.05g120500.1.p locus=Glyma.05g120500 ID=Glyma.05g120500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAGATAACAATGTCAACCTCCCACCCGGGTTTCGCTTCTACCCCACAGATGAAGAGCTTGTTGTTCATTTCCTTCAAAGAAAGGCAAACCTTCTTCCTTGCCATCCAGATGTCATCCCTGATCTTGAACTCTACCCATATGATCCTTGGGAACTTCATGGTAGAGCTTTGGCAGAGGGAAAGCAATGGTACTACTACAGCAGAAGGACACAAAATAGGGTCACTGGCAATGGTTATTGGATGCCAATGGGAATGGAAGAGCCAGTGGTTTCAAGCTCAAGCAATAAGAGAGTTGGCATGAAGAAATATTATGTGTTCCATTTGGGAGAAGCCCCTGATGGTAACACAACCAATTGGATAATGCAAGAGTATCGTCTATTAGATTCTGATTCCTCTAGCAGATCATCTAAAAGAAGATCACAACCTAAACCGGACCATAATAAATGGGTGATATGTCAAGTTTATGAACAGGATAACGATGATGATGGTGATGGTACAGAACTCTCTTGTTTGGATGAAGTTTTCTTGTCATTGGATGATCTTGAAGAAATAAGTTTGCCAAATTAG
Predicted protein sequences of Glyma.05g120500
>Glyma.05g120500.1.p sequence-type=predicted peptide transcript=Glyma.05g120500.1 locus=Glyma.05g120500 ID=Glyma.05g120500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGDNNVNLPPGFRFYPTDEELVVHFLQRKANLLPCHPDVIPDLELYPYDPWELHGRALAEGKQWYYYSRRTQNRVTGNGYWMPMGMEEPVVSSSSNKRVGMKKYYVFHLGEAPDGNTTNWIMQEYRLLDSDSSSRSSKRRSQPKPDHNKWVICQVYEQDNDDDGDGTELSCLDEVFLSLDDLEEISLPN*






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