Report for Sequence Feature Glyma.05g117600
| Feature Type: | gene_model |
| Chromosome: | Gm05 |
| Start: | 31102302 |
| stop: | 31106298 |
| Source: | JGI |
| Version: | Wm82.a4.v1 |
| High confidence: | yes |
| 
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Annotations for Glyma.05g117600
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|
| AT5G64200.1 | AT |
ATSC35,SC35 |
JGI | N/A | IEA |
| GO:0003676 | GO-mf |
nucleic acid binding |
JGI | N/A | IEA |
| K12891 | KEGG |
Spliceosome |
JGI | N/A | IEA |
| KOG4207 |
KOG |
Predicted splicing factor, SR protein superfamily |
JGI | N/A | IEA |
| PTHR23147 | PantherFam |
SERINE/ARGININE RICH SPLICING FACTOR |
JGI | N/A | IEA |
| PF00076 | Pfam |
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
JGI | N/A | IEA |
Proteins Associated with Glyma.05g117600
| Locus | Gene Symbol | Protein Name |
|---|
| | SF | serine/arginine-rich splicing factor |
Gene model name correspondences to Glyma.05g117600 Gene Call Version Wm82.a4.v1
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Glyma05g24540 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
Coding sequences of Glyma.05g117600
>Glyma.05g117600.1 sequence-type=CDS polypeptide=Glyma.05g117600.1.p locus=Glyma.05g117600 id=Glyma.05g117600.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGTCTCACTTCGGACGTTCGGGTCCCCCAGACATTTCCGACACTTACTCTCTTCTCGTTCTGAACATCACCTTCCGTACCACCGCCGACGACCTATTCCCTCTCTTCGACAAGTATGGGAAGGTCGTCGACATCTTCATCCCCAAGGATCGAAGGACTGGTGAATCGAGGGGTTTTGCGTTCGTGCGTTACAAGTATGCTGATGAGGCTCAGAAGGCCGTTGAGAGGCTCGACGGGAGAATGGTTGATGGTCGCGAAATAACGGTCCAGTTTGCGAAATATGGGCCTAATGCTGAAAGGATTCACAAAGGAAGGATTATTGAAACATCCCCAAGATCAAGGCGATCAAGGAGCCGTAGCCCAAGGAAAAGGCATCGTGATGATTACAGAGACAGAGATTATAGGAGAAGAAGTCGCAGCAGAAGTTATGATAGGTATGAACGTGACAGGCATCGTGGGAGAGACAAAGATTATCGTCGCAGAAGTAGGAGCCGTAGTGCCAGTCTTGATTACAAGGGTCGTGGTAGAGGACGCTATGATGATGAGCGTAATAGTAGAAGCCGGAGCAGATCAGTTGATAGCCGCTCCCCTGCACGACGCAGTCCTAGTCCTCGAAGGAGTCCCTCCCCTCAGAGGAGCACTTCCCCTCAAAGGAGTACTTCCCCTAGGAAGAGTCCACGGGGTGAAAGTCCTGCAAATCGTAGCCGTGAGGAACGTTCCCCTACCCCTCGCAGTGTCTCACCACGCGGTCGCCCTGATGCTTCACGAAGTCCTTCCCCTCGAAATTCAAACGGGGATGAATAA
>Glyma.05g117600.2 sequence-type=CDS polypeptide=Glyma.05g117600.2.p locus=Glyma.05g117600 id=Glyma.05g117600.2.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGTCTCACTTCGGACGTTCGGGTCCCCCAGACATTTCCGACACTTACTCTCTTCTCGTTCTGAACATCACCTTCCGTACCACCGCCGACGACCTATTCCCTCTCTTCGACAAGTATGGGAAGGTCGTCGACATCTTCATCCCCAAGGATCGAAGGACTGGTGAATCGAGGGGTTTTGCGTTCGTGCGTTACAAGTATGCTGATGAGGCTCAGAAGGCCGTTGAGAGGCTCGACGGGAGAATGGTTGATGGTCGCGAAATAACGGTCCAGTTTGCGAAATATGGGCCTAATGCTGAAAGGATTCACAAAGGAAGGATTATTGAAACATCCCCAAGATCAAGGCGATCAAGGAGCCGTAGCCCAAGGAAAAGGCATCGTGATGATTACAGAGACAGAGATTATAGGAGAAGAAGTCGCAGCAGAAGTTATGATAGGTATGAACGTGACAGGCATCGTGGGAGAGACAAAGATTATCGTCGCAGAAGTAGGAGCCGTAGTGCCAGTCTTGATTACAAGGGTCGTGGTAGAGGACGCTATGATGATGAGCGTAATAGTAGAAGCCGGAGCAGATCAGTTGATAGCCGCTCCCCTGCACGACGCAGTCCTAGTCCTCGAAGGAGTCCCTCCCCTCAGAGGAGCACTTCCCCTCAAAGGAGTACTTCCCCTAGGAAGAGTCCACGGGGTGAAAGTCCTGCAAATCGTAGCCGTGAGGAACGTTCCCCTACCCCTCGCAGTGTCTCACCACGCGGTCGCCCTGATGCTTCACGAAGTCCTTCCCCTCGAAATTCAAACGGGGATGAATAA
>Glyma.05g117600.4 sequence-type=CDS polypeptide=Glyma.05g117600.4.p locus=Glyma.05g117600 id=Glyma.05g117600.4.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGTCTCACTTCGGACGTTCGGGTCCCCCAGACATTTCCGACACTTACTCTCTTCTCGTTCTGAACATCACCTTCCGTACCACCGCCGACGACCTATTCCCTCTCTTCGACAAGTATGGGAAGGTCGTCGACATCTTCATCCCCAAGGATCGAAGGACTGGTGAATCGAGGGGTTTTGCGTTCGTGCGTTACAAGTATGCTGATGAGGCTCAGAAGGCCGTTGAGAGGCTCGACGGGAGAATGGTTGATGGTCGCGAAATAACGGTCCAGTTTGCGAAATATGGGCCTAATGCTGAAAGGATTTTTTCAAATTGCAGTCACAAAGGAAGGATTATTGAAACATCCCCAAGATCAAGGCGATCAAGGAGCCGTAGCCCAAGGAAAAGGCATCGTGATGATTACAGAGACAGAGATTATAGGAGAAGAAGTCGCAGCAGAAGTTATGATAGGTATGAACGTGACAGGCATCGTGGGAGAGACAAAGATTATCGTCGCAGAAGTAGGAGCCGTAGTGCCAGTCTTGATTACAAGGGTCGTGGTAGAGGACGCTATGATGATGAGCGTAATAGTAGAAGCCGGAGCAGATCAGTTGATAGCCGCTCCCCTGCACGACGCAGTCCTAGTCCTCGAAGGAGTCCCTCCCCTCAGAGGAGCACTTCCCCTCAAAGGAGTACTTCCCCTAGGAAGAGTCCACGGGGTGAAAGTCCTGCAAATCGTAGCCGTGAGGAACGTTCCCCTACCCCTCGCAGTGTCTCACCACGCGGTCGCCCTGATGCTTCACGAAGTCCTTCCCCTCGAAATTCAAACGGGGATGAATAA
Predicted protein sequences of Glyma.05g117600
>Glyma.05g117600.1.p sequence-type=predicted peptide transcript=Glyma.05g117600.1 locus=Glyma.05g117600 id=Glyma.05g117600.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEAQKAVERLDGRMVDGREITVQFAKYGPNAERIHKGRIIETSPRSRRSRSRSPRKRHRDDYRDRDYRRRSRSRSYDRYERDRHRGRDKDYRRRSRSRSASLDYKGRGRGRYDDERNSRSRSRSVDSRSPARRSPSPRRSPSPQRSTSPQRSTSPRKSPRGESPANRSREERSPTPRSVSPRGRPDASRSPSPRNSNGDE*
>Glyma.05g117600.2.p sequence-type=predicted peptide transcript=Glyma.05g117600.2 locus=Glyma.05g117600 id=Glyma.05g117600.2.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEAQKAVERLDGRMVDGREITVQFAKYGPNAERIHKGRIIETSPRSRRSRSRSPRKRHRDDYRDRDYRRRSRSRSYDRYERDRHRGRDKDYRRRSRSRSASLDYKGRGRGRYDDERNSRSRSRSVDSRSPARRSPSPRRSPSPQRSTSPQRSTSPRKSPRGESPANRSREERSPTPRSVSPRGRPDASRSPSPRNSNGDE*
>Glyma.05g117600.4.p sequence-type=predicted peptide transcript=Glyma.05g117600.4 locus=Glyma.05g117600 id=Glyma.05g117600.4.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEAQKAVERLDGRMVDGREITVQFAKYGPNAERIFSNCSHKGRIIETSPRSRRSRSRSPRKRHRDDYRDRDYRRRSRSRSYDRYERDRHRGRDKDYRRRSRSRSASLDYKGRGRGRYDDERNSRSRSRSVDSRSPARRSPSPRRSPSPQRSTSPQRSTSPRKSPRGESPANRSREERSPTPRSVSPRGRPDASRSPSPRNSNGDE*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
