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Report for Sequence Feature Glyma.05g116500

Feature Type:gene_model
Chromosome:Gm05
Start:30930427
stop:30931763
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g116500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G25150.1AT HXXXD-type acyl-transferase family protein JGI N/AIEA
GO:0016747GO-mf transferase activity, transferring acyl groups other than amino-acyl groups EnsemblGenomesN/AIEA
GO:0016747GO-mf transferase activity, transferring acyl groups other than amino-acyl groups JGI N/AIEA
PF02458PFAM Transferase family JGI N/AIEA
GN7V-44906SoyCyc9-rxn 10-deacetylbaccatin III 10-O-acetyltransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.05g116500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g116500 not represented in the dataset
Glyma.05g116500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g116500
ParalogEvidenceComments
Glyma.08g071400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.


Coding sequences of Glyma.05g116500
>Glyma.05g116500.1 sequence-type=CDS polypeptide=Glyma.05g116500.1.p locus=Glyma.05g116500 ID=Glyma.05g116500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACGCCTTCAAAGCCCACTCCTACTACCGTTCTTTCACTGTCTACCATTGACATGTTGGATAATATAAATTTATTTAGTCCATTAATCAACCTTCATGTATACCGATCGGCAAGCCACAATTCCCTTAACACTACCAAACTTGACCCTGCAAAAGTGATCAAAGAGGTCCTCTCAAAGGCTCTCTTTTACTATCATCCTCTTGCAGGAAAGCTAGTAAGACATGCTGATGGAAAACTAAGAATCAACTGCACCTCCCATCAAGGAATTCCATTCATTGAGGCTATTTGTAATTGCAACCTCTCTTCTCTTCATTACCTAGATGATGAATTTGGAAACCAATATCCTTTGGTTTTCAAGGTGACTAAATTCCTGTGTGGAGGTTTCATATTTGTAGTGGGCTGGTCTCACGCTGTTTGTGATGGAACTGGTGTATCTCAGTTCTTACGAGCCGTGGCAGAAATTGCAAGAGGAAAAACCGAGCCCTCTTTGAAACTTGTGAGGGAAAGAGAGAGACTAGTTGGCACGATCACTATTCAACCCATGAAAAATCCCATGGACAATGCCTCTCTTGCAGTTTCACCATTTCTGCTAAGCACAGATTTTTTGGATGAATACTATAAGGTGGACAGAGAGAGCATAGCAAGACTCAAGATGAGTTTGACGAAAGAAAGTGGCAATGAAGAAAGTACTGAGAAAAAAGGGTTAACAAATTTTGAAACCCTAGCTGCGTACATCTGGAGGTCAAGAACCAGAGCCTTAAAACTGAGCTACGATGGAGAAACTATGCTAGTTATCATAGTAGGGGTGAGACCACGCTTGCTGCAGGATTCTTTGCCCGGTGGATATTACGGGAATGCCATCACGCAAGCATTTGTTACGTTACACATGAATTATTTTGTTGCTCTTATAGATTAA
Predicted protein sequences of Glyma.05g116500
>Glyma.05g116500.1.p sequence-type=predicted peptide transcript=Glyma.05g116500.1 locus=Glyma.05g116500 ID=Glyma.05g116500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTPSKPTPTTVLSLSTIDMLDNINLFSPLINLHVYRSASHNSLNTTKLDPAKVIKEVLSKALFYYHPLAGKLVRHADGKLRINCTSHQGIPFIEAICNCNLSSLHYLDDEFGNQYPLVFKVTKFLCGGFIFVVGWSHAVCDGTGVSQFLRAVAEIARGKTEPSLKLVRERERLVGTITIQPMKNPMDNASLAVSPFLLSTDFLDEYYKVDRESIARLKMSLTKESGNEESTEKKGLTNFETLAAYIWRSRTRALKLSYDGETMLVIIVGVRPRLLQDSLPGGYYGNAITQAFVTLHMNYFVALID*






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