SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.05g115100

Feature Type:gene_model
Chromosome:Gm05
Start:30553684
stop:30559517
Source:JGI
Version:Wm82.a4.v1
High confidence:yes



Annotations for Glyma.05g115100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G56510.1AT JGI N/AIEA
K14785KEGG Ribosome biogenesis JGI N/AIEA
KOG3152 KOG TBP-binding protein, activator of basal transcription (contains rrm motif) JGI N/AIEA
PTHR12311PantherFam ACTIVATOR OF BASAL TRANSCRIPTION 1 JGI N/AIEA
PTHR12311:SF7PantherFam ACTIVATOR OF BASAL TRANSCRIPTION 1 JGI N/AIEA
PF14259Pfam JGI N/AIEA

Gene model name correspondences to Glyma.05g115100 Gene Call Version Wm82.a4.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g24130 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05g115100
>Glyma.05g115100.1 sequence-type=CDS polypeptide=Glyma.05g115100.1.p locus=Glyma.05g115100 id=Glyma.05g115100.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGAATGCTTCAGACTCAGAGAAAGAAGACACAGAAATTGAAGTAATAGCAATTACACCCAATGAAGAAAACTCGAAATTGATGAAGAAAGAGAAGAAAAAGAAGAAGAAAGTTTCGTTGAAAGATGCAGAGAAGAAGGGCGGCGTGTGTTATATGAGTCGAATCCCCCCTCATATGGACCACGTCAAGCTTCGCCACATTCTCTCTCAGTTCGGCGATATTCAAAGAATTTTTCTCGCTCCTCAAGATTCTTCTGTCCAAGTGCCTGCTAAGAGGTCACGTGGATCCCGAGACCAAGCATATTCAGAAGGATGGGTCGAATTCGGTAATAAAAGTGTTGCTAAGAGGGTTGCCAATATGTTAAATGGTGAACAAATAGGGGGTAAGAAGAGGTCATCATTCTACTATGACCTTTGGAATATTAAGTACTTAAGTAAGTTCAAGTGGGATGATCTGACTGAAGAACTAGCCTTAAAGAAAGCTATTCGGGAGCAAAAGCTGGCTGTAGAACTTTCTGCTGCCAAGAGAGAGAGGGATTTCTATCTTTCCAAAGTTGATCAATCACGTGCTTTGAGTGCTATAGAGGAGCGACTAAAGAAGAAGCAGAAGATCCAAAAAGACTCAGGACCAGTGGAAAAAGTGATTCGCCATTTCCCTCAAACAAAGCCTATAGTTGCTGATGCCAAAAAAAATAAACCTGAGCTCTCTGATGATATATTGGATGCTGTATTTGGTGGCTCGCAAGTCATGTATTGA
Predicted protein sequences of Glyma.05g115100
>Glyma.05g115100.1.p sequence-type=predicted peptide transcript=Glyma.05g115100.1 locus=Glyma.05g115100 id=Glyma.05g115100.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MNASDSEKEDTEIEVIAITPNEENSKLMKKEKKKKKKVSLKDAEKKGGVCYMSRIPPHMDHVKLRHILSQFGDIQRIFLAPQDSSVQVPAKRSRGSRDQAYSEGWVEFGNKSVAKRVANMLNGEQIGGKKRSSFYYDLWNIKYLSKFKWDDLTEELALKKAIREQKLAVELSAAKRERDFYLSKVDQSRALSAIEERLKKKQKIQKDSGPVEKVIRHFPQTKPIVADAKKNKPELSDDILDAVFGGSQVMY*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo