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Report for Sequence Feature Glyma.05g111400

Feature Type:gene_model
Chromosome:Gm05
Start:29639409
stop:29640756
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g111400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G17810.1AT C2H2 and C2HC zinc fingers superfamily protein JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA

Expression Patterns of Glyma.05g111400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g111400
ParalogEvidenceComments
Glyma.17g155600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g111400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g23620 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05g111400
>Glyma.05g111400.1 sequence-type=CDS polypeptide=Glyma.05g111400.1.p locus=Glyma.05g111400 ID=Glyma.05g111400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGGAATCCTAGGGACCAATATCATCATCAGGACCAAGATCAAGATGAGTCGTGGGAAGTCAGAGCCTTCGCAGAAGACACCAGTAACATCATGGGCACCACCTGGCCTCCTAGGTCCTACTCCTGCACCTTCTGTAGAAAGGAGTTCCGTTCAGCACAAGCCCTCGGCGGCCACATGAACGTTCACCGCCGCGACCGCGCCCGCCTCCACCAAGCCTCAGTACCCCACAACAACCCCTCTTTTTCTCCCACACCCTCTTTTCTTAACATCTCTCATCAGGAGCCTTTTGTTGCAAATGGGGGTTTGTGCCTCTTGTACCCCTTTCCAAGCCCTAATAACAATGCTCCATTTTCCTCTCTAGGCCACAACAATAATGCATGTGGTGACTCACCTTCCACTGCTTTTTCAGTTTCTTCTTCTCATTCCCTTCAGTACCCTCCAATGAGGGTGCCTAGTTGCTCAGCTTCTACTTCCTTTGATTTCTCTGTGGCTCAGCCTGCTCCTCCTGCTGTAGGGAGGAATAATAATGGTGCACCTGGAGCAGCAATTTGGTTGGAAGAGATGGTGAAGAAGAGAAAGGAGAAAGGTGCACCTAGGACAGTGAAGAAGAGGAAGAAGAAGACAAGCCATATGTGA
Predicted protein sequences of Glyma.05g111400
>Glyma.05g111400.1.p sequence-type=predicted peptide transcript=Glyma.05g111400.1 locus=Glyma.05g111400 ID=Glyma.05g111400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MWNPRDQYHHQDQDQDESWEVRAFAEDTSNIMGTTWPPRSYSCTFCRKEFRSAQALGGHMNVHRRDRARLHQASVPHNNPSFSPTPSFLNISHQEPFVANGGLCLLYPFPSPNNNAPFSSLGHNNNACGDSPSTAFSVSSSHSLQYPPMRVPSCSASTSFDFSVAQPAPPAVGRNNNGAPGAAIWLEEMVKKRKEKGAPRTVKKRKKKTSHM*






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