SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.05g108200

Feature Type:gene_model
Chromosome:Gm05
Start:28696301
stop:28697693
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g108200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G49760.1AT basic leucine-zipper 5 JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0003700GO-mf DNA binding transcription factor activity EnsemblGenomesN/AIEA
GO:0003700GO-mf sequence-specific DNA binding transcription factor activity JGI N/AIEA
GO:0043565GO-mf sequence-specific DNA binding JGI N/AIEA
PTHR22952Panther CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED JGI N/AIEA
PTHR22952:SF60Panther JGI N/AIEA
PF00170PFAM bZIP transcription factor JGI N/AIEA

Proteins Associated with Glyma.05g108200
LocusGene SymbolProtein Name
BZIP72 bZIP transcription factor bZIP72
bZIP41 Basic leucine zipper transcription factor-like protein gene 41

Expression Patterns of Glyma.05g108200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g108200
ParalogEvidenceComments
Glyma.17g158900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g108200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g22860 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05g108200
>Glyma.05g108200.1 sequence-type=CDS polypeptide=Glyma.05g108200.1.p locus=Glyma.05g108200 ID=Glyma.05g108200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTCTCCGCCCTCACTCCTTCCGACCCCTTCTCTCCCTTCTCCCCCTTCTCCGCCGGCTTCACGCCGTGGGATGACAACGACGATTCCCACGCCCTCTTCTCCCCCAAACCGGTCTCTGCTTCTAGCTCCGCCTCTGACTATAAATCCGAACCGAACCCAACCGAACACGTATGCGCCTCGTCCTCGGTGATGATGGACGAGCGGAAACGGCGCCGCATGATATCGAACCGGGAATCGGCCCGCAGGTCCAGGATGCGGAAACAGAGACACCTGGAGAATCTTCGGAACCAGTTGAACAAGTGCAGGGTCGAAAACCGGGAACTCGGTAACCGGTTGCAGTTCTTCCTGCACCACCTGAACCGCCTCCGAACCGAAAACGAATGGCTCCGCTCCGAGCGAACCCTGCTACGCCAAAAAGTCGCCAATTTAACACAAATTTTGATTTTCCAACAATTCCAAACCACCTTCTCCCCTGCTGCATGGACCACATGCACCAACAACAACACCACCTCGCTCATGACAATTAATCAAGTTAATTAA
Predicted protein sequences of Glyma.05g108200
>Glyma.05g108200.1.p sequence-type=predicted peptide transcript=Glyma.05g108200.1 locus=Glyma.05g108200 ID=Glyma.05g108200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLSALTPSDPFSPFSPFSAGFTPWDDNDDSHALFSPKPVSASSSASDYKSEPNPTEHVCASSSVMMDERKRRRMISNRESARRSRMRKQRHLENLRNQLNKCRVENRELGNRLQFFLHHLNRLRTENEWLRSERTLLRQKVANLTQILIFQQFQTTFSPAAWTTCTNNNTTSLMTINQVN*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo