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Report for Sequence Feature Glyma.05g106100

Feature Type:gene_model
Chromosome:Gm05
Start:28170704
stop:28175400
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g106100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G67590.1AT NADH-ubiquinone oxidoreductase-related JGI N/AIEA
GO:0022900GO-bp electron transport chain EnsemblGenomesN/AIEA
GO:0022900GO-bp electron transport chain JGI N/AIEA
GO:0016651GO-mf oxidoreductase activity, acting on NAD(P)H EnsemblGenomesN/AIEA
GO:0016651GO-mf oxidoreductase activity, acting on NAD(P)H JGI N/AIEA
KOG3389 KOG NADH:ubiquinone oxidoreductase, NDUFS4/18 kDa subunit JGI N/AIEA
PTHR12219Panther NADH-UBIQUINONE OXIDOREDUCTASE JGI N/AIEA
PTHR12219:SF8Panther NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 4, MITOCHONDRIAL JGI N/AIEA
PF04800PFAM ETC complex I subunit conserved region JGI N/AIEA
PWY-3781SoyCyc9 aerobic respiration I (cytochrome c) Plant Metabolic Network ISS
PWY-4302SoyCyc9 aerobic respiration III (alternative oxidase pathway) Plant Metabolic Network ISS
PWY-5083SoyCyc9 NAD/NADH phosphorylation and dephosphorylation Plant Metabolic Network ISS
GN7V-44991SoyCyc9-rxn NADH:ubiquinone reductase (H+-translocating) Plant Metabolic Network ISS

Expression Patterns of Glyma.05g106100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g106100
ParalogEvidenceComments
Glyma.17g160400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g106100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g22510 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.05g106100
>Glyma.05g106100.2 sequence-type=transcript locus=Glyma.05g106100 ID=Glyma.05g106100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTATTTACTGTCTTTAAAGTTTACAAATAATTGATGCATCACTAGATCCCTTATTGCTAACCATTGTAAGTTTGTAACTCAATTTGCCCTTTTGCTTTGTACCTACACTGCAATGCAGGTTGTAATTTACTCTCCTGCTAGAACTGCATCTCAACAGGGATCTGGGAAGGTTGGAAAATGGAAGATCAACTTCTTATCTACCCAAAAGTGGGAAAATCCACTGATGGGCTGGACATCCACTGGGGACCCCTACTCTCATGTTGGTGATTCTGCCTTGACTTTTGATAGTGAAGAAGCAGCAAAAGCATTTGCAGAGAAACATGGTTGGGAGTATTCGGTGAAGAAGCCCCACACACCATTGCTGAAGGTTAAATCATATGCGGACAACTTCAAATGGAAGGGACCACCCAAATCTGGTGAAGAGTGATTTGTTGGTTTGTATTCATGTTAATGCATTCCGTCTTCTGGAGTTTAACGTGCAGCAGTTTTCTCTGCATCTTTTCTTGGAAAAAAGAAAGTTTTAATGTGAATTACTGATTGGAAATAAAAGGGACTGATCTGCCATTTATTTAGTTTTCTTCTATGATGTAGATACTGCATCTGTTTATAATCGATTTGGCCTACCATCTTAACTGAACGCTGTAATGAACAATTGGTTGCAGGACAAACTGATCCAATAATAGCTGCTGACTCTGGGCAACAGTTTTTAT
Coding sequences of Glyma.05g106100
>Glyma.05g106100.1 sequence-type=CDS polypeptide=Glyma.05g106100.1.p locus=Glyma.05g106100 ID=Glyma.05g106100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGAATACCCTACAACGCGCCCTACGCGCCACCATGGCCCGGCGGTTCTCCACCGACGCATTGGCCGAAATTAAACGAGGCGAGATCGGAATGGTTTCTGGAATTCCTCAAGAGCACCTTCGTAGGAGGGTTGTAATTTACTCTCCTGCTAGAACTGCATCTCAACAGGGATCTGGGAAGGTTGGAAAATGGAAGATCAACTTCTTATCTACCCAAAAGTGGGAAAATCCACTGATGGGCTGGACATCCACTGGGGACCCCTACTCTCATGTTGGTGATTCTGCCTTGACTTTTGATAGTGAAGAAGCAGCAAAAGCATTTGCAGAGAAACATGGTTGGGAGTATTCGGTGAAGAAGCCCCACACACCATTGCTGAAGGTTAAATCATATGCGGACAACTTCAAATGGAAGGGACCACCCAAATCTGGTGAAGAGTGA

>Glyma.05g106100.2 sequence-type=CDS polypeptide=Glyma.05g106100.2.p locus=Glyma.05g106100 ID=Glyma.05g106100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGGTTGTAATTTACTCTCCTGCTAGAACTGCATCTCAACAGGGATCTGGGAAGGTTGGAAAATGGAAGATCAACTTCTTATCTACCCAAAAGTGGGAAAATCCACTGATGGGCTGGACATCCACTGGGGACCCCTACTCTCATGTTGGTGATTCTGCCTTGACTTTTGATAGTGAAGAAGCAGCAAAAGCATTTGCAGAGAAACATGGTTGGGAGTATTCGGTGAAGAAGCCCCACACACCATTGCTGAAGGTTAAATCATATGCGGACAACTTCAAATGGAAGGGACCACCCAAATCTGGTGAAGAGTGA
Predicted protein sequences of Glyma.05g106100
>Glyma.05g106100.1.p sequence-type=predicted peptide transcript=Glyma.05g106100.1 locus=Glyma.05g106100 ID=Glyma.05g106100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MANTLQRALRATMARRFSTDALAEIKRGEIGMVSGIPQEHLRRRVVIYSPARTASQQGSGKVGKWKINFLSTQKWENPLMGWTSTGDPYSHVGDSALTFDSEEAAKAFAEKHGWEYSVKKPHTPLLKVKSYADNFKWKGPPKSGEE*

>Glyma.05g106100.2.p sequence-type=predicted peptide transcript=Glyma.05g106100.2 locus=Glyma.05g106100 ID=Glyma.05g106100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQVVIYSPARTASQQGSGKVGKWKINFLSTQKWENPLMGWTSTGDPYSHVGDSALTFDSEEAAKAFAEKHGWEYSVKKPHTPLLKVKSYADNFKWKGPPKSGEE*






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