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Report for Sequence Feature Glyma.05g103300

Feature Type:gene_model
Chromosome:Gm05
Start:27423781
stop:27425313
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g103300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G37540.1AT LOB domain-containing protein 39 JGI N/AIEA
PF03195PFAM Protein of unknown function DUF260 JGI N/AIEA

Proteins Associated with Glyma.05g103300
LocusGene SymbolProtein Name
LBD23 LBD domain-containing transcription factor

Expression Patterns of Glyma.05g103300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g103300 not represented in the dataset
Glyma.05g103300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.05g103300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g22120 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05g103300
>Glyma.05g103300.1 sequence-type=CDS polypeptide=Glyma.05g103300.1.p locus=Glyma.05g103300 ID=Glyma.05g103300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTTGCAACGGGTGCCGCGTTCTTCGAAAGGGATGCAGCGAGTCCTGTATGTTGCGCCCTTGTTTGCAGTGGATCGAAACCGCCCAAGCTCAAGGCCACGCCACTGTCTTCGTCGCCAAATTCTTCGGCCGTGCCGGCCTCATGTCCTTCATTTCCAACGTTCCAGAAAATCAAAGACCCGCGCTGTTTCAGTCGCTGCTCTTCGAAGCGTGCGGGAGAACGGTGAACCCCGTGAACGGCGCCGTGGGACTTCTCTGGACCGGGAACTGGCACGTTTGCCAGGCCGCGGTGGAGACGGTGCTCCGCGGTGGCACGCTGAGGCCCATGCCGGAGCTCATGGGCCTCGACGCTCCCGCCGCCGCGGCCACCGATGAAGCATCGGAGGCCGAAGTGGCCTGCACCGACACGTGGAGGATCCGAAACCCGAACCCGAATTGCCGGTTCACAAGCTCGCGGTCCTCCGGCTGCGGCGGCGGCGGCAAACGCAAGCGGTCGGAGGAGCTGGCAAAGCTTCAGGCGCAGCCGAATCTCGATCTCCGGCTGACGCCGGTTTTTTCGCAGAAGGTTGAGAGCCGCCGGCCGGAATCTCCGTCGATGACATCGGTGGAATCCGGAACGACGACGGAGAACAGATTTGGGGATCAGTGGGGTCACCGGAAAGTTCTCAACCTTTTCATTTGA
Predicted protein sequences of Glyma.05g103300
>Glyma.05g103300.1.p sequence-type=predicted peptide transcript=Glyma.05g103300.1 locus=Glyma.05g103300 ID=Glyma.05g103300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSCNGCRVLRKGCSESCMLRPCLQWIETAQAQGHATVFVAKFFGRAGLMSFISNVPENQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPMPELMGLDAPAAAATDEASEAEVACTDTWRIRNPNPNCRFTSSRSSGCGGGGKRKRSEELAKLQAQPNLDLRLTPVFSQKVESRRPESPSMTSVESGTTTENRFGDQWGHRKVLNLFI*






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