Glyma.05g101100

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Report for Sequence Feature Glyma.05g101100

Feature Type:	gene_model
Chromosome:	Gm05
Start:	26836881
stop:	26839332
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.05g101100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G36630.1	AT	Vacuolar sorting protein 39	JGI	N/A	IEA
GO:0006886	GO-bp	intracellular protein transport	EnsemblGenomes	N/A	IEA
GO:0006886	GO-bp	intracellular protein transport	JGI	N/A	IEA
GO:0016192	GO-bp	vesicle-mediated transport	EnsemblGenomes	N/A	IEA
GO:0016192	GO-bp	vesicle-mediated transport	JGI	N/A	IEA
GO:0005622	GO-cc	intracellular	EnsemblGenomes	N/A	IEA
PTHR12894	Panther	CNH DOMAIN CONTAINING	JGI	N/A	IEA
PTHR12894:SF5	Panther	SUBFAMILY NOT NAMED	JGI	N/A	IEA
PF00637	PFAM	Region in Clathrin and VPS	JGI	N/A	IEA
PF10367	PFAM	Vacuolar sorting protein 39 domain 2	JGI	N/A	IEA

Expression Patterns of Glyma.05g101100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g101100 not represented in the dataset	Glyma.05g101100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.05g101100 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma05g21641	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.05g101100

Limit To All Plant Sequences

>Glyma.05g101100.2 sequence-type=transcript locus=Glyma.05g101100 ID=Glyma.05g101100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACATCCAACAAGAAAGTAGATAAACTCCAAGATGAGGTAGGTTCCATGCAAGTAGATATTACATCATTCACATTATTACTGGAAGGATTGTCAAAAACTGACACTGCTAAATACACTGATGATTATGACGTCAAGCCTTATGATTTCAGTCACTTGCCTAGTATTCCACTATGTGGGACGAACCCCATAATTGTTCTAAAGTTCTCCATGCTTGTTCTTGAAAGTTGTCCATCTCAAACTATAGACCTCTTTCTGTCTGGAAATATTCCAACAGATATGGTGAGCTCATATTTGAAGAAGCATTCTCCAAACATGCAAGCTAGGTACTTAGAGCTCATGCTTGCAATGAATGAGAATGCAGTATTTAGAAATTTGCATAATGAAATGGGGGCTGAAAGATCATTCCCAACAAGGAAAAAATTATTGACTGCCTTAGAGAGTATAGCAAGATACAATCCAGAGGCTTTGCTAAAACATCTGCCACTAGATGCATTGTATGAAGAATGTGCAATATTGTTGGGGAAAATGAACCAACATGATCTGGCATTATCTTTGTATGTTCATAAGCTTAATGCTCTAGAACTGGCATTGTCTTATTGTGATCGGGTCTATGAGTGTATGCATCAACCATCTTCAAAAAATTCCAACAACATATACCTTGTACTTCTGCAAATTTATTTGAATCCTCGAAGGACCATAGCAGGTTTTGAAAACATAATTAAAAATCTATTATCCCCACAGAATAAAACCATTCCAAAACTTACTCCTACCCCATCCATAAAAAGTAGAGGCCAAGGGTTAAAGAAAATTGTTGCAATAGAGGGTGCAAAGGACACAAAAGTTAGTTTAAGCAGCACTGACAATGGCAGGAGTCATGGTGATGCAGATGAGTATAATGAGGGTGGTTCTACCATCATGCTTGATGAGGTCGTTGATTTGTTGAGCCATAGGTGGGATAGAATTAATGGAGCTCAGGCCCTTAAACTTTTACCAAAAGAGACGAAATTACAGACCTACTTTCGTTTCTTGGACCCCTTCTGA

Coding sequences of Glyma.05g101100

Limit To All Plant Sequences

>Glyma.05g101100.1 sequence-type=CDS polypeptide=Glyma.05g101100.1.p locus=Glyma.05g101100 ID=Glyma.05g101100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACATCCAACAAGAAAGTAGATAAACTCCAAGATGAGGTAGGTTCCATGCAAGTAGATATTACATCATTCACATTATTACTGGAAGGATTGTCAAAAACTGACACTGCTAAATACACTGATGATTATGACGTCAAGCCTTATGATTTCAGTCACTTGCCTAGTATTCCACTATGTGGGACGAACCCCATAATTGTTCTAAAGTTCTCCATGCTTGTTCTTGAAAGTTGTCCATCTCAAACTATAGACCTCTTTCTGTCTGGAAATATTCCAACAGATATGGTGAGCTCATATTTGAAGAAGCATTCTCCAAACATGCAAGCTAGGTACTTAGAGCTCATGCTTGCAATGAATGAGAATGCAGTATTTAGAAATTTGCATAATGAAATGGGGGCTGAAAGATCATTCCCAACAAGGAAAAAATTATTGACTGCCTTAGAGAGTATAGCAAGATACAATCCAGAGGCTTTGCTAAAACATCTGCCACTAGATGCATTGTATGAAGAATGTGCAATATTGTTGGGGAAAATGAACCAACATGATCTGGCATTATCTTTGTATGTTCATAAGCTTAATGCTCTAGAACTGGCATTGTCTTATTGTGATCGGGTCTATGAGTGTATGCATCAACCATCTTCAAAAAATTCCAACAACATATACCTTGTACTTCTGCAAATTTATTTGAATCCTCGAAGGACCATAGCAGGTTTTGAAAACATAATTAAAAATCTATTATCCCCACAGAATAAAACCATTCCAAAACTTACTCCTACCCCATCCATAAAAAGTAGAGGCCAAGGGTTAAAGAAAATTGTTGCAATAGAGGGTGCAAAGGACACAAAAGTTAGTTTAAGCAGCACTGACAATGGCAGGAGTCATGGTGATGCAGATGAGTATAATGAGGGTGGTTCTACCATCATGCTTGATGAGGTCGTTGATTTGTTGAGCCATAGGTGGGATAGAATTAATGGAGCTCAGGCCCTTAAACTTTTACCAAAAGAGACGAAATTACAGAAATGTGTCTATAATCTGCAAGACCTACTTTCGTTTCTTGGACCCCTTCTGAGAAAATCTAATGAAATGTACCGAAATTGTTCAGTGATAAAGAGCTTGAGACAAAGTGAGAACCTTCATCATGATTCAATTTGTTTTGAACACGTGAAAGACAAACTCTATAGTCAGAGGAAAGCAATTGTGAAGATAACCGGTGATAGCATGTGTTCTCTGTGCCATAAGAAAATAGGGACAAGTGTTTTTGCAGTCTACCCAAATGGTAGCACACTCGTGCACTTTGTTTGTTTAAGAGATTCTCAAAATATGAAAGCAGTGGGCAAAGGGTCTCAATTGAGGAAGCAACTATGA

>Glyma.05g101100.2 sequence-type=CDS polypeptide=Glyma.05g101100.2.p locus=Glyma.05g101100 ID=Glyma.05g101100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACATCCAACAAGAAAGTAGATAAACTCCAAGATGAGGTAGGTTCCATGCAAGTAGATATTACATCATTCACATTATTACTGGAAGGATTGTCAAAAACTGACACTGCTAAATACACTGATGATTATGACGTCAAGCCTTATGATTTCAGTCACTTGCCTAGTATTCCACTATGTGGGACGAACCCCATAATTGTTCTAAAGTTCTCCATGCTTGTTCTTGAAAGTTGTCCATCTCAAACTATAGACCTCTTTCTGTCTGGAAATATTCCAACAGATATGGTGAGCTCATATTTGAAGAAGCATTCTCCAAACATGCAAGCTAGGTACTTAGAGCTCATGCTTGCAATGAATGAGAATGCAGTATTTAGAAATTTGCATAATGAAATGGGGGCTGAAAGATCATTCCCAACAAGGAAAAAATTATTGACTGCCTTAGAGAGTATAGCAAGATACAATCCAGAGGCTTTGCTAAAACATCTGCCACTAGATGCATTGTATGAAGAATGTGCAATATTGTTGGGGAAAATGAACCAACATGATCTGGCATTATCTTTGTATGTTCATAAGCTTAATGCTCTAGAACTGGCATTGTCTTATTGTGATCGGGTCTATGAGTGTATGCATCAACCATCTTCAAAAAATTCCAACAACATATACCTTGTACTTCTGCAAATTTATTTGAATCCTCGAAGGACCATAGCAGGTTTTGAAAACATAATTAAAAATCTATTATCCCCACAGAATAAAACCATTCCAAAACTTACTCCTACCCCATCCATAAAAAGTAGAGGCCAAGGGTTAAAGAAAATTGTTGCAATAGAGGGTGCAAAGGACACAAAAGTTAGTTTAAGCAGCACTGACAATGGCAGGAGTCATGGTGATGCAGATGAGTATAATGAGGGTGGTTCTACCATCATGCTTGATGAGGTCGTTGATTTGTTGAGCCATAGGTGGGATAGAATTAATGGAGCTCAGGCCCTTAAACTTTTACCAAAAGAGACGAAATTACAGACCTACTTTCGTTTCTTGGACCCCTTCTGA

Predicted protein sequences of Glyma.05g101100

Limit To All Plant Sequences

>Glyma.05g101100.1.p sequence-type=predicted peptide transcript=Glyma.05g101100.1 locus=Glyma.05g101100 ID=Glyma.05g101100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTSNKKVDKLQDEVGSMQVDITSFTLLLEGLSKTDTAKYTDDYDVKPYDFSHLPSIPLCGTNPIIVLKFSMLVLESCPSQTIDLFLSGNIPTDMVSSYLKKHSPNMQARYLELMLAMNENAVFRNLHNEMGAERSFPTRKKLLTALESIARYNPEALLKHLPLDALYEECAILLGKMNQHDLALSLYVHKLNALELALSYCDRVYECMHQPSSKNSNNIYLVLLQIYLNPRRTIAGFENIIKNLLSPQNKTIPKLTPTPSIKSRGQGLKKIVAIEGAKDTKVSLSSTDNGRSHGDADEYNEGGSTIMLDEVVDLLSHRWDRINGAQALKLLPKETKLQKCVYNLQDLLSFLGPLLRKSNEMYRNCSVIKSLRQSENLHHDSICFEHVKDKLYSQRKAIVKITGDSMCSLCHKKIGTSVFAVYPNGSTLVHFVCLRDSQNMKAVGKGSQLRKQL*

>Glyma.05g101100.2.p sequence-type=predicted peptide transcript=Glyma.05g101100.2 locus=Glyma.05g101100 ID=Glyma.05g101100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTSNKKVDKLQDEVGSMQVDITSFTLLLEGLSKTDTAKYTDDYDVKPYDFSHLPSIPLCGTNPIIVLKFSMLVLESCPSQTIDLFLSGNIPTDMVSSYLKKHSPNMQARYLELMLAMNENAVFRNLHNEMGAERSFPTRKKLLTALESIARYNPEALLKHLPLDALYEECAILLGKMNQHDLALSLYVHKLNALELALSYCDRVYECMHQPSSKNSNNIYLVLLQIYLNPRRTIAGFENIIKNLLSPQNKTIPKLTPTPSIKSRGQGLKKIVAIEGAKDTKVSLSSTDNGRSHGDADEYNEGGSTIMLDEVVDLLSHRWDRINGAQALKLLPKETKLQTYFRFLDPF*

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