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Report for Sequence Feature Glyma.05g100500

Feature Type:gene_model
Chromosome:Gm05
Start:26669951
stop:26687648
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g100500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G67320.1AT WD-40 repeat family protein JGI N/AIEA
GO:0006357GO-bp regulation of transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0016575GO-bp histone deacetylation EnsemblGenomesN/AIEA
GO:1903507GO-bp negative regulation of nucleic acid-templated transcription EnsemblGenomesN/AIEA
GO:0000118GO-cc histone deacetylase complex EnsemblGenomesN/AIEA
GO:0003714GO-mf transcription corepressor activity EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG0273 KOG Beta-transducin family (WD-40 repeat) protein JGI N/AIEA
PTHR22846Panther WD40 REPEAT PROTEIN JGI N/AIEA
PTHR22846:SF2Panther F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN EBI JGI N/AIEA
PF00400PFAM WD domain, G-beta repeat JGI N/AIEA
PF08513PFAM LisH JGI N/AIEA

Expression Patterns of Glyma.05g100500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g100500
ParalogEvidenceComments
Glyma.17g165900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g100500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g21580 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.05g100500
>Glyma.05g100500.2 sequence-type=transcript locus=Glyma.05g100500 ID=Glyma.05g100500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTATGTGTATGCGTCTGTAAGATGTCGTCAATTACCTAGTTTTTCCTCACCTTCAAGAATCAGGTTTCACGCATGCTGCTTTTACTTTTGGTTATGAAGCTGGTATTAACAAATGCTCCATTGATGGAAATTTGGTGCCGTCAGGTGCTCTTGTTACATTTGTTCAGAAGGGTCTACAGTACTTTGAGATGGAAGCCAACTTGAGTAATTGTGATGCAGACCTGGAAGAAGATTTTTCATTCTTACAACCTTTGGATCTTATCACGAAAGATGTGCATGAACTTAGGCAAATGATAAGTGAAAGAAGAAAAAAACTACAGAAGGAAAGAAAGAAGGAATTTGAAAAGGAGCATGAAGGTGAACGTGTACGGGTAAGAGAAAAGGATAGACGTGAAAGGGAAAAAGAAGTTGAAAAGGAAAGACGTGAAAGGGAGAAAGAAGTTGAAAAAGATAGACGTGAAAGAGAGAAAGAAGTTGAAAAGGATAGACGTGAAAGGGAGAAAGAAGTTGAAAAGGATAGACGCGAAAAGGAGAAAGAAGTTGAAAAGGATAGACGCGAAAAGGAGAAAGAAGTTGAAAAGGATAGACGTGAAAGAGAGAAAGAAGTTGTAAAGGATAGGAAGAAGATAGAAAATGATAAAGAGCGAGAACAACAGCATGGTGATCAGACTGTCAGAGAAATGTTCGTGGATCATGAAGATAGGGTTCCTGTAAAGCTTGAAGAGAATGGAGCAGTTGGAGGGCCAGAACCAATGGACATCTCTACAACATCAACATCTCAGCTATGTGGAATTCCTAGTTCAGATGTGACAATTTTGGAAGGTCATACTTCAGAGGTGTGTGCTTGTGCATGGAGCCCTACAGGATCTCTTCTTGCATCCGGATCTGGAGATTCGACAGCTCGTATCTGGACAATAGCAGAAGGGAGATGTAAGCCTGGTTCAGAGAATGGCCCTTTGAATGTGTTGGTGTTGAAGCATGTTAGGGGTAAAACAAATGAAAAGAGTAAAGATGTTACTACACTTGACTGGAATGGGGAAGGGACACTTCTCGCAACTGGTTCATATGATGGGCAAGCAAGAATTTGGACCACCAATGGTGAACTGAAGAGTACATTAAGCAAACACAAGGGACCAATATTCTCTCTGAAGTGGAATAAGAAAGGAGATTATCTTCTGACTGGAAGTTGTGATCAAACTGCAATTGTGTGGGATGTGAAGGCAGAAGAATGGAAACAACAATTTGAATTTCATTCAGGTCCAACACTTGATGTTGATTGGCGCAACAATGTGTCTTTTGCCACAAGTTCCACAGACAATATGATACATGTTTGCAAAATTGGAGAAACCCACCCTATAAAAACTTTTACTGGGCACCAGGGTGAAGTTAATTGTGTCAAATGGGATCCCACAGGTTCATTGCTGGCCTCCTGTTCTGATGATATCACAGCAAAGATATGGAGTATGAAGCAGGATACTTATCTTCATGACTTAAGGGAGCATTCCAAGGAGATATATACCATCAGATGGAGCCCCACTGGTCCTGGTACAAATAACCCTAATCATAAACTGGTGTTGGCTAGTGCTTCATTTGACTCAACTGTAAAGCTATGGGATGTGGAACTTGGGAAACTCATCTACAGCTTGGATGGACACAGGCATCCTGTATATTCTGTTGCTTTCAGTCCCAATGGCGATTATCTAGTTAGTGGGTCTCTTGACAGATCCATGCACATATGGTCATTGAGGGACGGCAAGATTGTCAAAACATACACAGGCAATGGGGGCATTTTTGAGGTCTGCTGGAATAAGGAGGGTGACAAGATTGCTGCATGTTTTGCTAATAATACAGTTTGCGTTTTGGATTTTAGAATGTAATATCTGTGAAGCGCCAATTTCTCCTCACCAGTACATTAAATTCTTTCTTTCCCCCCCTTGAGATGAGATCGGTGGAAATGTATTTTGGGTGGGTGGATAGGTTACCCATTTTAACCATAGTTGTAGTGGACCCTGTTGTAATTTGCTAGAACATTATTAAAAAGTAGTTTGTAGGAGTGCATTCTTAATAAGCAAAAGTGTATAGATTTAGTTGGACAAAATCCTGTACAAGGATCGCTAGACTTTTTGTATCTACTTGCCTTTCTCTTGCACGATGGCTGCAAATGGCATGCATTTTCGGTCCCTTTGATCCATTAAGGCTTGTTAATGAAA
Coding sequences of Glyma.05g100500
>Glyma.05g100500.1 sequence-type=CDS polypeptide=Glyma.05g100500.1.p locus=Glyma.05g100500 ID=Glyma.05g100500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCTCCATCTCCTCCGCTGAACTCAATTACCTCGTTTATCGCTACCTTCAAGAATCAGGTTTCACGCATGCTGCTTTTACTTTTGGTTATGAAGCTGGTATTAACAAATGCTCCATTGATGGAAATTTGGTGCCGTCAGGTGCTCTTGTTACATTTGTTCAGAAGGGTCTACAGTACTTTGAGATGGAAGCCAACTTGAGTAATTGTGATGCAGACCTGGAAGAAGATTTTTCATTCTTACAACCTTTGGATCTTATCACGAAAGATGTGCATGAACTTAGGCAAATGATAAGTGAAAGAAGAAAAAAACTACAGAAGGAAAGAAAGAAGGAATTTGAAAAGGAGCATGAAGGTGAACGTGTACGGGTAAGAGAAAAGGATAGACGTGAAAGGGAAAAAGAAGTTGAAAAGGAAAGACGTGAAAGGGAGAAAGAAGTTGAAAAAGATAGACGTGAAAGAGAGAAAGAAGTTGAAAAGGATAGACGTGAAAGGGAGAAAGAAGTTGAAAAGGATAGACGCGAAAAGGAGAAAGAAGTTGAAAAGGATAGACGCGAAAAGGAGAAAGAAGTTGAAAAGGATAGACGTGAAAGAGAGAAAGAAGTTGTAAAGGATAGGAAGAAGATAGAAAATGATAAAGAGCGAGAACAACAGCATGGTGATCAGACTGTCAGAGAAATGTTCGTGGATCATGAAGATAGGGTTCCTGTAAAGCTTGAAGAGAATGGAGCAGTTGGAGGGCCAGAACCAATGGACATCTCTACAACATCAACATCTCAGCTATGTGGAATTCCTAGTTCAGATGTGACAATTTTGGAAGGTCATACTTCAGAGGTGTGTGCTTGTGCATGGAGCCCTACAGGATCTCTTCTTGCATCCGGATCTGGAGATTCGACAGCTCGTATCTGGACAATAGCAGAAGGGAGATGTAAGCCTGGTTCAGAGAATGGCCCTTTGAATGTGTTGGTGTTGAAGCATGTTAGGGGTAAAACAAATGAAAAGAGTAAAGATGTTACTACACTTGACTGGAATGGGGAAGGGACACTTCTCGCAACTGGTTCATATGATGGGCAAGCAAGAATTTGGACCACCAATGGTGAACTGAAGAGTACATTAAGCAAACACAAGGGACCAATATTCTCTCTGAAGTGGAATAAGAAAGGAGATTATCTTCTGACTGGAAGTTGTGATCAAACTGCAATTGTGTGGGATGTGAAGGCAGAAGAATGGAAACAACAATTTGAATTTCATTCAGGTCCAACACTTGATGTTGATTGGCGCAACAATGTGTCTTTTGCCACAAGTTCCACAGACAATATGATACATGTTTGCAAAATTGGAGAAACCCACCCTATAAAAACTTTTACTGGGCACCAGGGTGAAGTTAATTGTGTCAAATGGGATCCCACAGGTTCATTGCTGGCCTCCTGTTCTGATGATATCACAGCAAAGATATGGAGTATGAAGCAGGATACTTATCTTCATGACTTAAGGGAGCATTCCAAGGAGATATATACCATCAGATGGAGCCCCACTGGTCCTGGTACAAATAACCCTAATCATAAACTGGTGTTGGCTAGTGCTTCATTTGACTCAACTGTAAAGCTATGGGATGTGGAACTTGGGAAACTCATCTACAGCTTGGATGGACACAGGCATCCTGTATATTCTGTTGCTTTCAGTCCCAATGGCGATTATCTAGTTAGTGGGTCTCTTGACAGATCCATGCACATATGGTCATTGAGGGACGGCAAGATTGTCAAAACATACACAGGCAATGGGGGCATTTTTGAGGTCTGCTGGAATAAGGAGGGTGACAAGATTGCTGCATGTTTTGCTAATAATACAGTTTGCGTTTTGGATTTTAGAATGTAA

>Glyma.05g100500.2 sequence-type=CDS polypeptide=Glyma.05g100500.2.p locus=Glyma.05g100500 ID=Glyma.05g100500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGCCAACTTGAGTAATTGTGATGCAGACCTGGAAGAAGATTTTTCATTCTTACAACCTTTGGATCTTATCACGAAAGATGTGCATGAACTTAGGCAAATGATAAGTGAAAGAAGAAAAAAACTACAGAAGGAAAGAAAGAAGGAATTTGAAAAGGAGCATGAAGGTGAACGTGTACGGGTAAGAGAAAAGGATAGACGTGAAAGGGAAAAAGAAGTTGAAAAGGAAAGACGTGAAAGGGAGAAAGAAGTTGAAAAAGATAGACGTGAAAGAGAGAAAGAAGTTGAAAAGGATAGACGTGAAAGGGAGAAAGAAGTTGAAAAGGATAGACGCGAAAAGGAGAAAGAAGTTGAAAAGGATAGACGCGAAAAGGAGAAAGAAGTTGAAAAGGATAGACGTGAAAGAGAGAAAGAAGTTGTAAAGGATAGGAAGAAGATAGAAAATGATAAAGAGCGAGAACAACAGCATGGTGATCAGACTGTCAGAGAAATGTTCGTGGATCATGAAGATAGGGTTCCTGTAAAGCTTGAAGAGAATGGAGCAGTTGGAGGGCCAGAACCAATGGACATCTCTACAACATCAACATCTCAGCTATGTGGAATTCCTAGTTCAGATGTGACAATTTTGGAAGGTCATACTTCAGAGGTGTGTGCTTGTGCATGGAGCCCTACAGGATCTCTTCTTGCATCCGGATCTGGAGATTCGACAGCTCGTATCTGGACAATAGCAGAAGGGAGATGTAAGCCTGGTTCAGAGAATGGCCCTTTGAATGTGTTGGTGTTGAAGCATGTTAGGGGTAAAACAAATGAAAAGAGTAAAGATGTTACTACACTTGACTGGAATGGGGAAGGGACACTTCTCGCAACTGGTTCATATGATGGGCAAGCAAGAATTTGGACCACCAATGGTGAACTGAAGAGTACATTAAGCAAACACAAGGGACCAATATTCTCTCTGAAGTGGAATAAGAAAGGAGATTATCTTCTGACTGGAAGTTGTGATCAAACTGCAATTGTGTGGGATGTGAAGGCAGAAGAATGGAAACAACAATTTGAATTTCATTCAGGTCCAACACTTGATGTTGATTGGCGCAACAATGTGTCTTTTGCCACAAGTTCCACAGACAATATGATACATGTTTGCAAAATTGGAGAAACCCACCCTATAAAAACTTTTACTGGGCACCAGGGTGAAGTTAATTGTGTCAAATGGGATCCCACAGGTTCATTGCTGGCCTCCTGTTCTGATGATATCACAGCAAAGATATGGAGTATGAAGCAGGATACTTATCTTCATGACTTAAGGGAGCATTCCAAGGAGATATATACCATCAGATGGAGCCCCACTGGTCCTGGTACAAATAACCCTAATCATAAACTGGTGTTGGCTAGTGCTTCATTTGACTCAACTGTAAAGCTATGGGATGTGGAACTTGGGAAACTCATCTACAGCTTGGATGGACACAGGCATCCTGTATATTCTGTTGCTTTCAGTCCCAATGGCGATTATCTAGTTAGTGGGTCTCTTGACAGATCCATGCACATATGGTCATTGAGGGACGGCAAGATTGTCAAAACATACACAGGCAATGGGGGCATTTTTGAGGTCTGCTGGAATAAGGAGGGTGACAAGATTGCTGCATGTTTTGCTAATAATACAGTTTGCGTTTTGGATTTTAGAATGTAA
Predicted protein sequences of Glyma.05g100500
>Glyma.05g100500.1.p sequence-type=predicted peptide transcript=Glyma.05g100500.1 locus=Glyma.05g100500 ID=Glyma.05g100500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASISSAELNYLVYRYLQESGFTHAAFTFGYEAGINKCSIDGNLVPSGALVTFVQKGLQYFEMEANLSNCDADLEEDFSFLQPLDLITKDVHELRQMISERRKKLQKERKKEFEKEHEGERVRVREKDRREREKEVEKERREREKEVEKDRREREKEVEKDRREREKEVEKDRREKEKEVEKDRREKEKEVEKDRREREKEVVKDRKKIENDKEREQQHGDQTVREMFVDHEDRVPVKLEENGAVGGPEPMDISTTSTSQLCGIPSSDVTILEGHTSEVCACAWSPTGSLLASGSGDSTARIWTIAEGRCKPGSENGPLNVLVLKHVRGKTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWTTNGELKSTLSKHKGPIFSLKWNKKGDYLLTGSCDQTAIVWDVKAEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIHVCKIGETHPIKTFTGHQGEVNCVKWDPTGSLLASCSDDITAKIWSMKQDTYLHDLREHSKEIYTIRWSPTGPGTNNPNHKLVLASASFDSTVKLWDVELGKLIYSLDGHRHPVYSVAFSPNGDYLVSGSLDRSMHIWSLRDGKIVKTYTGNGGIFEVCWNKEGDKIAACFANNTVCVLDFRM*

>Glyma.05g100500.2.p sequence-type=predicted peptide transcript=Glyma.05g100500.2 locus=Glyma.05g100500 ID=Glyma.05g100500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEANLSNCDADLEEDFSFLQPLDLITKDVHELRQMISERRKKLQKERKKEFEKEHEGERVRVREKDRREREKEVEKERREREKEVEKDRREREKEVEKDRREREKEVEKDRREKEKEVEKDRREKEKEVEKDRREREKEVVKDRKKIENDKEREQQHGDQTVREMFVDHEDRVPVKLEENGAVGGPEPMDISTTSTSQLCGIPSSDVTILEGHTSEVCACAWSPTGSLLASGSGDSTARIWTIAEGRCKPGSENGPLNVLVLKHVRGKTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWTTNGELKSTLSKHKGPIFSLKWNKKGDYLLTGSCDQTAIVWDVKAEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIHVCKIGETHPIKTFTGHQGEVNCVKWDPTGSLLASCSDDITAKIWSMKQDTYLHDLREHSKEIYTIRWSPTGPGTNNPNHKLVLASASFDSTVKLWDVELGKLIYSLDGHRHPVYSVAFSPNGDYLVSGSLDRSMHIWSLRDGKIVKTYTGNGGIFEVCWNKEGDKIAACFANNTVCVLDFRM*






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