Glyma.05g099000

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Report for Sequence Feature Glyma.05g099000

Feature Type:	gene_model
Chromosome:	Gm05
Start:	26265440
stop:	26273641
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.05g099000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G37280.1	AT	MRG family protein	JGI	N/A	IEA
GO:0006325	GO-bp	chromatin organization	EnsemblGenomes	N/A	IEA
GO:0006338	GO-bp	chromatin remodeling	EnsemblGenomes	N/A	IEA
GO:0006351	GO-bp	transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0006355	GO-bp	regulation of transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0016569	GO-bp	covalent chromatin modification	EnsemblGenomes	N/A	IEA
GO:0016573	GO-bp	histone acetylation	EnsemblGenomes	N/A	IEA
GO:0000123	GO-cc	histone acetyltransferase complex	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
KOG3001	KOG	Dosage compensation regulatory complex/histone acetyltransferase complex, subunit MSL-3/MRG15/EAF3, and related CHROMO domain-containing proteins	JGI	N/A	IEA
PTHR10880	Panther	MORTALITY FACTOR 4-LIKE PROTEIN	JGI	N/A	IEA
PF05712	PFAM	MRG	JGI	N/A	IEA
PF11717	PFAM	RNA binding activity-knot of a chromodomain	JGI	N/A	IEA

Expression Patterns of Glyma.05g099000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g099000 not represented in the dataset	Glyma.05g099000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.05g099000

Paralog	Evidence	Comments
Glyma.17g166700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g099000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma05g21320	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.05g099000

Limit To All Plant Sequences

>Glyma.05g099000.2 sequence-type=transcript locus=Glyma.05g099000 ID=Glyma.05g099000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAAAAACCCAAAAAACGGTCCAAATTCTGTATCTCGTAGGCACTCACTCACTCTCTTCCCAAACACAGCGTGTTGTTTTCCCGGTTCCCGCCCATAGTTCCATTTTCGCTCTCTCGGTCGCTCTCACTCCATCACCCATGGGAAATTCATCCAAGGACAACGACTccgccacctccgccgacgcctccgccggcgacgTTCAGCCCTCCAATTCCGCCGTCTACTCCGAGGGCGAGAAAGTCCTCGCCTACCACGGCCCTCGCATCTACGAAGCAAAGGTGCAAAAAGCCGAGATCAGAAAGAGTGAATGGAAATATTTTGTTCACTACCTTGGCTGGAGTAAAAATTGGGACGAATGGGTAGGTGAGGAACGTTTGATGAAACATACTGAAGAGAATGTAATGAAACAACAGGCCCTAGACAAAAAGCAAAATGTAGACAAGAATGTTAAGTCTGGGCGTTCATCTCAAGGAAAGGCCAAAAGTTCTACCGATGCCAAAATGGATAAAGAGGATGTCAAGAATAATGTGTCAAAAGGGAAGAAACGAAAGCATGATGCGGGAGTTGAGAAGGGCAGCGGGACTGTTGAAAAGCTTGTCAAGATTCAAATTCCTGCAACATTAAAGAAACAACTTGTTGATGATTGGGACTCTGTTACTCAGCAAGATAAGCTTGTAAAACTTCCCCGTTCACCAACTGTTGATGAAATTCTGACAAAGTACCTTGAATACAAATCAAAGAAGGATGGCATTGCTCCTGATTCAATAGGAGAAATTTTGAAAGGAATAAGGTGTTATTTTGATAAAGCATTGCCTATGATGCTCTTGTACAAAAAAGAACGCAAGCAATATAATGATGCAATTGTGGATAATGTGTCTCCATCAACCATATATGGTGCTGAACATTTATTACGCCTCTTTGTTAAGTTACCTGAGCTTTTGGCATATGTTACTATTGAGGAAGAAACATTGAATCGCTTGCAGCAGAAATTACTTGACTTTCTCAAGTTTTTGCAGAAAAATCAAAGTACCTTCTTTCTTTCAGCATATGATGGCACCAAAGTCTCTgaaggaaaagTTCCAAGAAGAGGAAGAGTCTTGTAGCCTATGTCTGGGTTAGGTGCAACGGAAGAACAATTGCAAGTTTTCTTTGTCCTTTGAAATGGATTGATTGTAACTAGTCAAGATTCATTTTTTGATTGTAACAACACATTTCAATATTTTTTATTTAAATTTTT

>Glyma.05g099000.3 sequence-type=transcript locus=Glyma.05g099000 ID=Glyma.05g099000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CGAACATCGAAAACTGAAAAACCCAAAAAACGGTCCAAATTCTGTATCTCGTAGGCACTCACTCACTCTCTTCCCAAACACAGCGTGTTGTTTTCCCGGTTCCCGCCCATAGTTCCATTTTCGCTCTCTCGGTCGCTCTCACTCCATCACCCATGGGAAATTCATCCAAGGACAACGACTccgccacctccgccgacgcctccgccggcgacgTTCAGCCCTCCAATTCCGCCGTCTACTCCGAGGGCGAGAAAGTCCTCGCCTACCACGGCCCTCGCATCTACGAAGCAAAGGTGCAAAAAGCCGAGATCAGAAAGAGTGAATGGAAATATTTTGTTCACTACCTTGGCTGGAGTAAAAATTGGGACGAATGGGTAGGTGAGGAACGTTTGATGAAACATACTGAAGAGAATGTAATGAAACAACAGGCCCTAGACAAAAAGCAAAATGTAGACAAGAATGTTAAGTCTGGGCGTTCATCTCAAGGAAAGGCCAAAAGTTCTACCGATGCCAAAATGGATAAAGAGGATGTCAAGAATAATGTGTCAAAAGGGAAGAAACGAAAGCATGATGCGGGAGTTGAGAAGGGCAGCGGGACTGTTGAAAAGCTTGTCAAGATTCAAATTCCTGCAACATTAAAGAAACAACTTGTTGATGATTGGGACTCTGTTACTCAGCAAGATAAGCTTGTAAAACTTCCCCGTTCACCAACTGTTGATGAAATTCTGACAAAGTACCTTGAATACAAATCAAAGAAGGATGGCATTGCTCCTGATTCAATAGGAGAAATTTTGAAAGGAATAAGGTGTTATTTTGATAAAGCATTGCCTATGATGCTCTTGTACAAAAAAGAACGCAAGCAATATAATGATGCAATTGTGGATAATGTGTCTCCATCAACCATATATGGTGCTGAACATTTATTACGCCTCTTTGTTAAGTTACCTGAGCTTTTGGCATATGTTACTATTGAGGAAGAAACATTGAATCGCTTGCAGCAGAAATTACTTGACTTTCTCAAGTTTTTGCAGAAAAATCAAAGTACCTTCTTTCTTTCAGCATATGATGGCACCAAAGTCTCTgaaggaaaaggtaaggggaaggatgaatgagaagACACAGAGTCCCTGATCTTCATCCTGTTGTATTTTTAATTGTTGTTATAAACAGTATCATCTTTCTCTTGAAAAACTAGGGAAGAAACTCAATTGTTGTTGTGAGAATATTGACTAATTCATTCTTTAATTTTTAAAGCTTACACAGTACTATTATACACAATGGAAACGTTTGGTGGCTCAGGTACATGTTATTATATGACCTCTTCAGGTCTGGGATGTGCTAAAAAAGGCGTGTTTGTGGCCTGAAAGAAAAGTTGGTTGAGCTGGCATGACCCATTTTAACCATGTTGCAC

Coding sequences of Glyma.05g099000

Limit To All Plant Sequences

>Glyma.05g099000.1 sequence-type=CDS polypeptide=Glyma.05g099000.1.p locus=Glyma.05g099000 ID=Glyma.05g099000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAAATTCATCCAAGGACAACGACTCCGCCACCTCCGCCGACGCCTCCGCCGGCGACGTTCAGCCCTCCAATTCCGCCGTCTACTCCGAGGGCGAGAAAGTCCTCGCCTACCACGGCCCTCGCATCTACGAAGCAAAGGTGCAAAAAGCCGAGATCAGAAAGAGTGAATGGAAATATTTTGTTCACTACCTTGGCTGGAGTAAAAATTGGGACGAATGGGTAGGTGAGGAACGTTTGATGAAACATACTGAAGAGAATGTAATGAAACAACAGGCCCTAGACAAAAAGCAAAATGTAGACAAGAATGTTAAGTCTGGGCGTTCATCTCAAGGAAAGGCCAAAAGTTCTACCGATGCCAAAATGGATAAAGAGGATGTCAAGAATAATGTGTCAAAAGGGAAGAAACGAAAGCATGATGCGGGAGTTGAGAAGGGCAGCGGGACTGTTGAAAAGCTTGTCAAGATTCAAATTCCTGCAACATTAAAGAAACAACTTGTTGATGATTGGGACTCTGTTACTCAGCAAGATAAGCTTGTAAAACTTCCCCGTTCACCAACTGTTGATGAAATTCTGACAAAGTACCTTGAATACAAATCAAAGAAGGATGGCATTGCTCCTGATTCAATAGGAGAAATTTTGAAAGGAATAAGGTGTTATTTTGATAAAGCATTGCCTATGATGCTCTTGTACAAAAAAGAACGCAAGCAATATAATGATGCAATTGTGGATAATGTGTCTCCATCAACCATATATGGTGCTGAACATTTATTACGCCTCTTTGTTAAGTTACCTGAGCTTTTGGCATATGTTACTATTGAGGAAGAAACATTGAATCGCTTGCAGCAGAAATTACTTGACTTTCTCAAGTTTTTGCAGAAAAATCAAAGTACCTTCTTTCTTTCAGCATATGATGGCACCAAAGTCTCTGAAGGAAAAGGTCAGTTCCAAGAAGAGGAAGAGTCTTGTAGCCTATGTCTGGGTTAG

>Glyma.05g099000.2 sequence-type=CDS polypeptide=Glyma.05g099000.2.p locus=Glyma.05g099000 ID=Glyma.05g099000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAAATTCATCCAAGGACAACGACTCCGCCACCTCCGCCGACGCCTCCGCCGGCGACGTTCAGCCCTCCAATTCCGCCGTCTACTCCGAGGGCGAGAAAGTCCTCGCCTACCACGGCCCTCGCATCTACGAAGCAAAGGTGCAAAAAGCCGAGATCAGAAAGAGTGAATGGAAATATTTTGTTCACTACCTTGGCTGGAGTAAAAATTGGGACGAATGGGTAGGTGAGGAACGTTTGATGAAACATACTGAAGAGAATGTAATGAAACAACAGGCCCTAGACAAAAAGCAAAATGTAGACAAGAATGTTAAGTCTGGGCGTTCATCTCAAGGAAAGGCCAAAAGTTCTACCGATGCCAAAATGGATAAAGAGGATGTCAAGAATAATGTGTCAAAAGGGAAGAAACGAAAGCATGATGCGGGAGTTGAGAAGGGCAGCGGGACTGTTGAAAAGCTTGTCAAGATTCAAATTCCTGCAACATTAAAGAAACAACTTGTTGATGATTGGGACTCTGTTACTCAGCAAGATAAGCTTGTAAAACTTCCCCGTTCACCAACTGTTGATGAAATTCTGACAAAGTACCTTGAATACAAATCAAAGAAGGATGGCATTGCTCCTGATTCAATAGGAGAAATTTTGAAAGGAATAAGGTGTTATTTTGATAAAGCATTGCCTATGATGCTCTTGTACAAAAAAGAACGCAAGCAATATAATGATGCAATTGTGGATAATGTGTCTCCATCAACCATATATGGTGCTGAACATTTATTACGCCTCTTTGTTAAGTTACCTGAGCTTTTGGCATATGTTACTATTGAGGAAGAAACATTGAATCGCTTGCAGCAGAAATTACTTGACTTTCTCAAGTTTTTGCAGAAAAATCAAAGTACCTTCTTTCTTTCAGCATATGATGGCACCAAAGTCTCTGAAGGAAAAGTTCCAAGAAGAGGAAGAGTCTTGTAG

>Glyma.05g099000.3 sequence-type=CDS polypeptide=Glyma.05g099000.3.p locus=Glyma.05g099000 ID=Glyma.05g099000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAAATTCATCCAAGGACAACGACTCCGCCACCTCCGCCGACGCCTCCGCCGGCGACGTTCAGCCCTCCAATTCCGCCGTCTACTCCGAGGGCGAGAAAGTCCTCGCCTACCACGGCCCTCGCATCTACGAAGCAAAGGTGCAAAAAGCCGAGATCAGAAAGAGTGAATGGAAATATTTTGTTCACTACCTTGGCTGGAGTAAAAATTGGGACGAATGGGTAGGTGAGGAACGTTTGATGAAACATACTGAAGAGAATGTAATGAAACAACAGGCCCTAGACAAAAAGCAAAATGTAGACAAGAATGTTAAGTCTGGGCGTTCATCTCAAGGAAAGGCCAAAAGTTCTACCGATGCCAAAATGGATAAAGAGGATGTCAAGAATAATGTGTCAAAAGGGAAGAAACGAAAGCATGATGCGGGAGTTGAGAAGGGCAGCGGGACTGTTGAAAAGCTTGTCAAGATTCAAATTCCTGCAACATTAAAGAAACAACTTGTTGATGATTGGGACTCTGTTACTCAGCAAGATAAGCTTGTAAAACTTCCCCGTTCACCAACTGTTGATGAAATTCTGACAAAGTACCTTGAATACAAATCAAAGAAGGATGGCATTGCTCCTGATTCAATAGGAGAAATTTTGAAAGGAATAAGGTGTTATTTTGATAAAGCATTGCCTATGATGCTCTTGTACAAAAAAGAACGCAAGCAATATAATGATGCAATTGTGGATAATGTGTCTCCATCAACCATATATGGTGCTGAACATTTATTACGCCTCTTTGTTAAGTTACCTGAGCTTTTGGCATATGTTACTATTGAGGAAGAAACATTGAATCGCTTGCAGCAGAAATTACTTGACTTTCTCAAGTTTTTGCAGAAAAATCAAAGTACCTTCTTTCTTTCAGCATATGATGGCACCAAAGTCTCTGAAGGAAAAGGTAAGGGGAAGGATGAATGA

Predicted protein sequences of Glyma.05g099000

Limit To All Plant Sequences

>Glyma.05g099000.1.p sequence-type=predicted peptide transcript=Glyma.05g099000.1 locus=Glyma.05g099000 ID=Glyma.05g099000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGNSSKDNDSATSADASAGDVQPSNSAVYSEGEKVLAYHGPRIYEAKVQKAEIRKSEWKYFVHYLGWSKNWDEWVGEERLMKHTEENVMKQQALDKKQNVDKNVKSGRSSQGKAKSSTDAKMDKEDVKNNVSKGKKRKHDAGVEKGSGTVEKLVKIQIPATLKKQLVDDWDSVTQQDKLVKLPRSPTVDEILTKYLEYKSKKDGIAPDSIGEILKGIRCYFDKALPMMLLYKKERKQYNDAIVDNVSPSTIYGAEHLLRLFVKLPELLAYVTIEEETLNRLQQKLLDFLKFLQKNQSTFFLSAYDGTKVSEGKGQFQEEEESCSLCLG*

>Glyma.05g099000.2.p sequence-type=predicted peptide transcript=Glyma.05g099000.2 locus=Glyma.05g099000 ID=Glyma.05g099000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGNSSKDNDSATSADASAGDVQPSNSAVYSEGEKVLAYHGPRIYEAKVQKAEIRKSEWKYFVHYLGWSKNWDEWVGEERLMKHTEENVMKQQALDKKQNVDKNVKSGRSSQGKAKSSTDAKMDKEDVKNNVSKGKKRKHDAGVEKGSGTVEKLVKIQIPATLKKQLVDDWDSVTQQDKLVKLPRSPTVDEILTKYLEYKSKKDGIAPDSIGEILKGIRCYFDKALPMMLLYKKERKQYNDAIVDNVSPSTIYGAEHLLRLFVKLPELLAYVTIEEETLNRLQQKLLDFLKFLQKNQSTFFLSAYDGTKVSEGKVPRRGRVL*

>Glyma.05g099000.3.p sequence-type=predicted peptide transcript=Glyma.05g099000.3 locus=Glyma.05g099000 ID=Glyma.05g099000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGNSSKDNDSATSADASAGDVQPSNSAVYSEGEKVLAYHGPRIYEAKVQKAEIRKSEWKYFVHYLGWSKNWDEWVGEERLMKHTEENVMKQQALDKKQNVDKNVKSGRSSQGKAKSSTDAKMDKEDVKNNVSKGKKRKHDAGVEKGSGTVEKLVKIQIPATLKKQLVDDWDSVTQQDKLVKLPRSPTVDEILTKYLEYKSKKDGIAPDSIGEILKGIRCYFDKALPMMLLYKKERKQYNDAIVDNVSPSTIYGAEHLLRLFVKLPELLAYVTIEEETLNRLQQKLLDFLKFLQKNQSTFFLSAYDGTKVSEGKGKGKDE*

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